BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35732.1

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947213 jgi|Araly1|947213|scaffold_703442.1                        507    4e-143


> Ahg947213 jgi|Araly1|947213|scaffold_703442.1
Length=343

 Score =  507 bits (274),  Expect = 4e-143
 Identities = 321/344 (93%), Gaps = 2/344 (1%)
 Strand=Plus/Plus

Query  2    TCAAGATCAAAGACAAAGAGATGACGCAGATGCTTTCCGTACTCCGTCGCAACCTTCAAA  61
            ||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct  1    TCAAGATCAGAGACATAGAGATGACGCAGATGCTTTCCGTACTCCGCCGTAACCTTCAAA  60

Query  62   ACCTTCGTAAGAGCCCTCGCGTAGCTGACGATACCGAGTTACCTTCATCGACTAG-TGGC  120
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |  || 
Sbjct  61   ACCTTCGTAAGAGCCCTCGCGTAGCTGACGAGACCGAGTTACCATCATCGAAT-GCAGGA  119

Query  121  GCCGGGCCGGGAGTTGTAGCTAATGGAAGACGAGACGGGTTTAACTCCGTGATCATGCGG  180
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  GCCGGGCCAGGAGTGGTAGCTAATGGAAGACGAGACGGGTTTAACTCCGTGATCATGCGG  179

Query  181  TTCCCGTTCTCGATCATCTCTTGCTTTGCGGTGCCCCGTGTTAGCGGGACAGATGGACTA  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  180  TTCCCGTTCTCGATCATCTCTTGCTTTGCGGTGCCGCGTGTTAGCGGGACAGATGGACTA  239

Query  241  TGGGTGTCTGGAGATTATGGTAGCATCTCGGAGGTTAACCATCTTATGGTTAGTGATAGT  300
            ||| |||| ||||||||||| ||  |||||||| ||||||||||||||||||||||||| 
Sbjct  240  TGGATGTCCGGAGATTATGGCAGTGTCTCGGAGATTAACCATCTTATGGTTAGTGATAGC  299

Query  301  ATGAGATACGCCATTTTAATGTAATAAACATACTTATAGTATAG  344
            |||||||||||||||||||||||||||||||| || ||||||||
Sbjct  300  ATGAGATACGCCATTTTAATGTAATAAACATATTTGTAGTATAG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16177969736


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5