BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35735.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493632 jgi|Araly1|493632|fgenesh2_kg.7__3065__AT5G35735.1 1977 0.0
Ahg914024 jgi|Araly1|914024|Al_scaffold_0001_4278 145 1e-33
> Ahg493632 jgi|Araly1|493632|fgenesh2_kg.7__3065__AT5G35735.1
Length=1398
Score = 1977 bits (1070), Expect = 0.0
Identities = 1301/1411 (92%), Gaps = 22/1411 (2%)
Strand=Plus/Plus
Query 38 AACCTTTC-AAAACAGAACACGAAGACATGGACCGAACACAATCTCCAAAGAC-AGCTCT 95
|||| ||| |||||||||||| |||||||||| |||||| ||||||||||| | ||||||
Sbjct 1 AACC-TTCAAAAACAGAACACAAAGACATGGATCGAACAAAATCTCCAAAG-CTAGCTCT 58
Query 96 GTTCGCCGTGTTGGCAACACTCCTTGTCTTAACCGTGAACGGCCAGTCACTTTGTAACAC 155
|||||| || ||||| ||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 59 GTTCGCTGTCTTGGCCACACTCCTTATCTTAACCGTGAACGGCCAATCAGTTTGTAACAC 118
Query 156 ACACAGGTTCACCAATAACCTCGCCTTCGCAGATTGCTCTGACCTCTCGGCCTTAGGCTC 215
||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 119 ACACAGGTTCACCAACAATCTCGCCTTCGCCGATTGCTCCGACCTCTCGGCCTTAGGCTC 178
Query 216 TTTCCTTCACTGGACCTACAATGAA-CAAAACGGTACCGTCTCAATCGCCTATCGCCACC 274
|||||| |||||||| ||||| ||| | |||||| ||||| || ||||||| |||||| |
Sbjct 179 TTTCCTCCACTGGACTTACAACGAATC-AAACGGCACCGTTTCCATCGCCTTTCGCCATC 237
Query 275 CTGGAACCTCTGCTTCTTCTTGGGTTGCTTGGGGACTTAACCCAAGTAGTACTCAGATGG 334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTGGAACCTCTTCTTCTTCTTGGGTTGCTTGGGGACTTAACCCAAGTAGTACTCAGATGG 297
Query 335 TTGGGACGCAAGCTCTCGTAGCCTTCACAAACACAACAACTAACCAATTCCAGGCCTATA 394
||||||| |||||||||||||||||||| | || ||| | ||||||||||||||||
Sbjct 298 TTGGGACACAAGCTCTCGTAGCCTTCAC-CA-AC-TCAAGTGGTCAATTCCAGGCCTATA 354
Query 395 CCTCTTCCGTGAGTTCCTATGGTACGCGGCTTGAACGTAGTAGCCTAAGTTTCGGTGTGA 454
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 355 CCTCTTCCGTGAGTTCCTATGGCACGCAGCTCGAACGTAGTAGCCTAAGTTTCGGTGTGA 414
Query 455 GTGGCCTCTCCGCGACTCTGGTCAGTGGCGAGGTTACGATCTTTGCAACTCTTGAGTTGT 514
||||| |||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||
Sbjct 415 GTGGCGTCTCCGCGACTCTGGTCAATGGAGAGGCTACGATCTTCGCAACTCTTGAGTTGT 474
Query 515 CTCCGAATCTGATCACGGCCAACCAGCTTTGGCAGGTGGGACCTGTTGTCAACGGTGTTC 574
| |||||| |||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 475 CGCCGAATTTGATCACGACCAACCAGCTTTGGCAGGTGGGACCTGTTGTTAATGGTGTTC 534
Query 575 CTGCGAGTCATCAAACCTCAGGAGATAATATGAGATCGAGTGGTAGGATTGATTTCCGGA 634
|||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 535 TTGCGAGACATCAAACGACAGGAGAGAATATGAGATCGAGTGGTAGGATTGATTTCAGGA 594
Query 635 CTGGTCAGGCATCAGCTGGTGGTGGTGGTTCCGGTGACAGGCTGAGGAAGAGAAACACGC 694
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 595 CAGGTCAGGCATCAGCTGGTGGTGGGGGTTCCGGTGACAGGCTCAGGAAGAGAAACACGC 654
Query 695 ATGGAGTACTAAATGCGGTCAGCTGGGGAGTACTAATGCCAATGGGAGCAATGATGGCTC 754
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 655 ATGGAGTACTAAATGCGGTCAGCTGGGGTGTACTAATGCCAATGGGTGCAATGACGGCTC 714
Query 755 GGTACATGAAAGTCTTCGCCGATCCAACATGGTTCTATCTCCACATTGCCTTTCAAGTGT 814
|||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |
Sbjct 715 GGTACATGAAAGTCTTCGCCGATCCAACCTGGTTCTATCTCCATATCGCCTTCCAAGTCT 774
Query 815 CGGGTTACGTCATCGGGGTAGCCGGTTGGGCCACCGGAATCAAGCTTGGTAACGACTCAC 874
| |||||||| ||||| ||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 775 CCGGTTACGTTATCGGCGTAGCTGGTTGGGCTACCGGAATCAAGCTTGGCAATGACTCAC 834
Query 875 CAGGCACATCTTACTCAACCCATCGTAACCTTGGAATAGCACTCTTCACATTTGCCACAC 934
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CCGGAACATCTTACTCAACCCATCGTAACCTTGGAATAGCACTCTTCACATTTGCCACAC 894
Query 935 TTCAAGTATTTGCTCTGCTTGTAAGGCCAAAGCCAGACCACAAATATCGAACGTACTGGA 994
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCAAGTATTTGCTCTGCTTCTAAGGCCAAAGCCAGACCACAAATATCGAACGTACTGGA 954
Query 995 ACGTGTACCATCACACCGTTGGATACACAACCATCATCCTCTCTATTGTCAACAT-TTTC 1053
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 955 ACGTGTACCATCACACCGTTGGATACACAACCATCATCCTCGCCATTGTCAACATCTTT- 1013
Query 1054 AAAGGATTCGACATTTTGGACCCGGAGGATAAATGGCGATGGGCTTACATTGGGATCCTC 1113
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1014 AAAGGATTCGACATTTTGGACCCGGCGGATAAATGGCGATGGGCTTACATTGGAATCCTC 1073
Query 1114 ATCTTTCTTGGTGCTTGTGTCCTTATTCTCGAGCCACTCACTTGGTTCATTGTTCTTCGC 1173
|| ||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||
Sbjct 1074 ATATTTCTTGGTGCTTGTATCCTTATACTTGAGCCACTCACTTGGTTCATCGTTCTTCGC 1133
Query 1174 CGTAAGAGCCGTGGAGGTAACACAGTCGCTGCACCAACTTCGAGCAAGTACTCTAACGGC 1233
|| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1134 CGCAAGAGCCGTGGAGGTAACACAGTTGCTGCACCAACTTCAAACAAGTACTCTAACGGC 1193
Query 1234 GTCAATGGTACCACCACCACTGGACCACATCACCAGGACGCCTAGTTTCactttttgttt 1293
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1194 GTCAATGGTACCACCACCACTGGACCGCATCACCAGGACGCCTAGTTTAACTTTTTGTTT 1253
Query 1294 ctacacttgttcttgttt-----gttctacttctactcgattttggattcttttttgatt 1348
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1254 CTACACTTCTTCTTGTTTCATTTGTTCTACTTCTACGCGATTTTGGATTCTTTTTTGATT 1313
Query 1349 tGATATTTTGTAGGCTCATGTATGTATTATGTATACAATTTTATTCATTGTGTTATAGAT 1408
|||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1314 TGATAT---GTAGGCTCATGTCTGTAT---GTATACAATTTTATTCATTGTGTTATCGAT 1367
Query 1409 ATATCGATTTATGGAGTCATTAATCTTTTAT 1439
|||||||||||||||||||||||||||||||
Sbjct 1368 ATATCGATTTATGGAGTCATTAATCTTTTAT 1398
> Ahg914024 jgi|Araly1|914024|Al_scaffold_0001_4278
Length=564
Score = 145 bits (78), Expect = 1e-33
Identities = 142/173 (82%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 461 TCTCCGCGACTCTGGTCAGTGGCGAGGTTACGATCTTTGCAACTCTTGAGTTGTCTCCGA 520
||||||||| |||||||| ||| |||| ||| ||||| ||||||||||||| | ||||
Sbjct 274 TCTCCGCGAGTCTGGTCAATGGGGAGGCTACCATCTTCACAACTCTTGAGTTACCACCGA 215
Query 521 ATCTGATCACGGCCAACCAGCT-TTGGCAGGTGGGACCTGTTGTCAACGGTGTTCCTGCG 579
|| |||||||| ||||||| | ||||||||| |||| |||||| || ||||||||| |
Sbjct 214 ATTTGATCACGAACAACCAG-TCTTGGCAGGTAGGACTTGTTGTTAATGGTGTTCCT-AG 157
Query 580 AGTCATCAAACCTCAGGAGATAATATGAGATCGAGTGGTAGGATTGATTTCCG 632
|| || ||| | |||||||||||||||||||||||||||| | || ||||
Sbjct 156 AGGAATAAAAGGACGGGAGATAATATGAGATCGAGTGGTAGGACTAATCTCCG 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5