BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35740.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947216 jgi|Araly1|947216|scaffold_703445.1                        586    6e-167


> Ahg947216 jgi|Araly1|947216|scaffold_703445.1
Length=400

 Score =  586 bits (317),  Expect = 6e-167
 Identities = 373/400 (93%), Gaps = 3/400 (1%)
 Strand=Plus/Plus

Query  46   TCATTGCCTTCTCT-AGAAACATGTCAACTTTCTTGATAAGGATACTTCTTCCTTTGCTT  104
            |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCATTGCCTTCT-TGGGAAACATGTCAACTTTCTTGATAAGGATACTTCTTCCTTTGCTT  59

Query  105  ATCATAGCAATGACTCTTCCTCGACGTTCAGAGGCAGAGTCGGAACAATGGTGCATAGCG  164
            ||||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||
Sbjct  60   ATCATAGCAATTACTATTCCTCAATGGTCAGAGGCAGAGTCGGAACAATGGTGCATAGCG  119

Query  165  GATGAACAAACGCCAGACGATGAGTTGCAAGCAGCCTTAGACTGGGCTTGCGGAAAAGGT  224
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| 
Sbjct  120  GATGAACAAACGCCAGACGATGAGCTGCAGGCAGCCTTAGACTGGGCTTGCGGGAAAGGC  179

Query  225  GGAGCAGACTGCAGCAAAATGCAGCAGGAAAACCAGCCTTGCTTCTTGCCTAACACAATC  284
            |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct  180  GGAGCAGACTGCAGCAAAATGCAGCAGGAAAACCAGACTTGCTTCTTACCCAACACAATC  239

Query  285  AGAGATCATGCCTCCTTTGCTTTCAACAGTTACTACCAAACTTATAAAAACAAAGGTGGT  344
            || |||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||
Sbjct  240  AGGGATCATGCCTCCTTTGCTTTTAACAGTTATTACCAAACTTATAAGCACAAAGGTGGT  299

Query  345  TCTTGTTACTTCAAAGGAGCTGCCATGATCACTGAGCTTGACCCCAGCCATGGTTCTTGC  404
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  300  TCTTGTTACTTCAAAGGAACTGCCATGATCACTGAGCTTGACCCCAGTCATGGTTCTTGC  359

Query  405  CAGTATGAGTATAACCCCTGATTCAAACGACACAGC-AAA  443
            || ||||||||||||||||||||| || || ||||| |||
Sbjct  360  CACTATGAGTATAACCCCTGATTCCAATGAGACAGCCAAA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5