BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35753.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930843 jgi|Araly1|930843|scaffold_303300.1 688 0.0
Ahg493634 jgi|Araly1|493634|fgenesh2_kg.7__3067__AT5G35753.1 484 8e-136
> Ahg930843 jgi|Araly1|930843|scaffold_303300.1
Length=2155
Score = 688 bits (372), Expect = 0.0
Identities = 607/721 (84%), Gaps = 14/721 (2%)
Strand=Plus/Plus
Query 1214 AACGGGCCAATAACAGTTCCAGACTCCGACTTCCATGACTTTGATAAAAATAGATTAGAG 1273
|||||||||||||||||||||||||| || |||||||||||||||||||| |||| |||
Sbjct 1417 AACGGGCCAATAACAGTTCCAGACTCTGATTTCCATGACTTTGATAAAAACAGATCGGAG 1476
Query 1274 GAGTGCTTCGAGGCTAGGCAAATATGGGCAATTTATGATGAAGATGATGGTATGCCACGC 1333
|| | ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GAATCCTTTGAGCCAAGGCAAATATGGGCAATTTATGATGAAGATGATGGTATGCCACGC 1536
Query 1334 TTATATTGCATGGTCCGGGAAGTACTATCTGTTCAACCTTTTAAGATTGACATAGCCTAC 1393
||||||| |||| |||||||||| || |||||||| |||||||| ||||| ||||||
Sbjct 1537 CTATATTGTGTGGTTAGGGAAGTACTCTCGGTTCAACCCTTTAAGATCGACATTGCCTAC 1596
Query 1394 TTGAGCTCCAAAACTGACATCGAGTTTGG-TACAATGAAATGGGTGCAGTATGGGTTTAC 1452
|| ||||||||||| |||||||||||||| | ||||||||||||| || || ||||||||
Sbjct 1597 TTAAGCTCCAAAACCGACATCGAGTTTGGGT-CAATGAAATGGGTACAATACGGGTTTAC 1655
Query 1453 AAAGTCGTGTGGACATTTCAGGATACGAAA-TACTGACATAGTTGATCATGTTAACATAT 1511
|||||||||||||||||||||||||||||| | ||||||||||||| || |||||||| |
Sbjct 1656 AAAGTCGTGTGGACATTTCAGGATACGAAACT-CTGACATAGTTGACCAAGTTAACATCT 1714
Query 1512 TTTCCCATCTCTTAAAAGGCAAGAAAACAGGAAGAGGCGGTTGTGTTAGGATATTCCCC- 1570
|||| ||||| || ||||||||||| ||||| ||||| ||||||||| | || ||||||
Sbjct 1715 TTTCGCATCTATTGAAAGGCAAGAAGACAGGGAGAGGTGGTTGTGTTCGAATCTTCCCCA 1774
Query 1571 CAAACCGGAGATATTTGGACTGTGTACAAGAACTGGTCACCAAACTGGAACA-ACTCAAC 1629
||| | || || |||||| |||| ||||| |||||||||| ||||||| | | |||||
Sbjct 1775 CAA-CTGGGGAGATTTGGGCTGTCTACAAAAACTGGTCACTAAACTGGGATGGA-TCAAC 1832
Query 1630 TCCAGATGAAGTGAGGCACCAATACAAAATGGTTGAGATCCTTGATGAATATTCTGAACA 1689
|| || ||||||||||||||||| ||||||||||||| |||||||| ||| |||||||
Sbjct 1833 ACCGGACGAAGTGAGGCACCAATATGAAATGGTTGAGATTCTTGATGAGTATACTGAACA 1892
Query 1690 GTTTGGGGTTTGCATCGCCCCGCTTGTGAAAGTAGATGGATACAAAACCGTGTATTGCAG 1749
|| ||| || || | ||||| ||| | ||| |||| || ||||||||||| ||| |||
Sbjct 1893 GTATGGTGTGTGTGTTGCCCCACTTATTAAACTAGAGGGTTACAAAACCGTATATCACAG 1952
Query 1750 GAGAGATAAGG-AGGAGAGCAAGAAATGGATACCGCGGAGAGAGATGCTGCGATTTTCGC 1808
||| | ||| |||| || ||||| ||||||||| || | |||||| || | || ||||
Sbjct 1953 GAGC-ACGAGGGAGGAAAGTAAGAAGTGGATACCGAGGTGCGAGATGTTGAGGTTCTCGC 2011
Query 1809 ATCAAGTGCCATCTCGGTTTCTTAAAGAAGAAACTTGTGG-TGTGCCCGGAAACTGTTGG 1867
|||||||||| ||| ||||||||||||| | ||| | || | | |||||||||||||||
Sbjct 2012 ATCAAGTGCCGTCTTGGTTTCTTAAAGATGCAACCAGCGGCTTT-CCCGGAAACTGTTGG 2070
Query 1868 GACTTAGACCCATCTGCTATACCAGAAGAGTTGCTTCACAAT-GGAGCAGGAACTGATTG 1926
|||||||| ||| |||| || || || ||| ||||||||| | ||||||||||| ||||
Sbjct 2071 GACTTAGATCCAGCTGCAATCCCCGAGGAGCTGCTTCACA-TCGGAGCAGGAACCAATTG 2129
Query 1927 A 1927
|
Sbjct 2130 A 2130
Score = 220 bits (119), Expect = 2e-56
Identities = 162/182 (89%), Gaps = 5/182 (3%)
Strand=Plus/Plus
Query 410 CTTCAGAAAAGGCTTGATACTTTCTGGACTGTATGCACATATTGCAAGGTTCAGTATGAG 469
|||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 509 CTTCAG-AAAGGCTTGATACTTTCTGGACTGTATGCACATCTTGCAAAGTTCAGTATGAG 567
Query 470 TATCT-GCGGAAGTATGTGAATAAGAGG-TTGTCATGTAAGAACTGCCGAGGTGCATTTA 527
|| || | |||||||||||||||||||| || |||||||||||||| || || |||||||
Sbjct 568 TA-CTTGAGGAAGTATGTGAATAAGAGGCTT-TCATGTAAGAACTGTCGTGGAGCATTTA 625
Query 528 TTGCTGTGGAGACTGGGCCGGCTCCTGTTAGTGCATCACTTCAGTATGCGCCTCCATCTC 587
||||||| || ||||| || ||||||||||||||| || |||| || ||||||||||||
Sbjct 626 TTGCTGTAGAAACTGGTCCAGCTCCTGTTAGTGCACCATTTCATTACACGCCTCCATCTC 685
Query 588 AT 589
||
Sbjct 686 AT 687
> Ahg493634 jgi|Araly1|493634|fgenesh2_kg.7__3067__AT5G35753.1
Length=1386
Score = 484 bits (262), Expect = 8e-136
Identities = 308/330 (93%), Gaps = 3/330 (1%)
Strand=Plus/Plus
Query 1580 GATATTT-GGACTGTGTACAAGAACTGGTCACCAAACTGGAACAACTCAACTCCAGATGA 1638
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1045 GATATTTGGGA-TGTGTACAAGAACTGGTCACCAAACTGGAACAACTCAACTCTAGATGA 1103
Query 1639 AGTGAGGCACCAATACAAAATGGTTGAGATCCTTGATGAATATTCTGAACAGTTTGGGGT 1698
||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1104 AGTGAGGCATCAGTACGAAATGGTTGAGATACTTGATGAATATTCTGAACAGTTTGGGGT 1163
Query 1699 TTGCATCGCCCCGCTTGTGAAAGTAGATGGATACAAAACCGTGTATTGCAGGAGAGATAA 1758
||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1164 TTGCATCGCCCCGCTAGTAAAAGTAGAGGGATACAAAACCGTGTATTGCAGGAGAGATAC 1223
Query 1759 GGAGGAGAGCAAGAAATGGATACCGCGGAGAGAGATGCTGCGATTTTCGCATCAAGTGCC 1818
||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1224 GGAGGAGAGCAAGAAATGGATACAA-GGAGAGAGATGCTGCGGTTTTCGCATCCAGTGCC 1282
Query 1819 ATCTCGGTTTCTTAAAGAAGAAACTTGTGGTGTGCCCGGAAACTGTTGGGACTTAGACCC 1878
|||| |||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||
Sbjct 1283 ATCTTGGTTTCTTAAAGAAGAAACTAGTGGTGTGCCCAGAAACTATTGGGACTTGGACCC 1342
Query 1879 ATCTGCTATACCAGAAGAGTTGCTTCACAA 1908
| ||||||||||||||||||||||||||||
Sbjct 1343 AGCTGCTATACCAGAAGAGTTGCTTCACAA 1372
Score = 411 bits (222), Expect = 1e-113
Identities = 264/285 (93%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 422 CTTGATACTTTCTGGACTGTATGCACATATTGCAAGGTTCAGTATGAGTATCTGCGGAAG 481
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 4 CTTGATACTTTCTGGACTGTATGCACATCGTGCAAAGTTCAGTATGAATATCTACGGAAG 63
Query 482 TATGTGAATAAGAGGTTGTCATGTAAGAACTGCCGAGGTGCATTTATTGCTGTGGAGACT 541
|||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||
Sbjct 64 CATGTGAATAAGAGGCTGTCATGTAAGAACTGTCGAGGAGCATTTATTTCTGTGGATACT 123
Query 542 GGGCCGGCTCCTGTTAGTGCATCACTTCAGTATGCGCCTCCATCTCATACAACAAGTAAT 601
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 124 AGGTCGGCTCCTGTTAGTGCATCACTTCAATATGCGCCTTCATCTCATACAACATGTAAT 183
Query 602 GGCTATGGAGGTCATGGCTATGATGCTGTTTCACGCATGCCTACCAATTCCACTTATTTC 661
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 184 GGCTATGGAGCTCATGGCTATGATGCCGTCTCACGCATGCCTACCAATTCCACTTATTTC 243
Query 662 TTAGGTCAGTATCCAGCACATGGATATGAATATGTTACAAATGAG 706
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 TTAGGTCAGTATCTTGCACATGGATATGAATATGTTACAAATGAG 288
Score = 239 bits (129), Expect = 6e-62
Identities = 141/147 (96%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 1399 CTCCAAAACTGACATCGAGTTTGGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGTC 1458
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTCCAAAACTGACATTGAGTTTGGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGTC 956
Query 1459 GTGTGGACATTTCAGGATACGAAATACTGACATAGTTGATCATGTTAACATATTTTCCCA 1518
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 957 GTGTGGACATTTCCGGATACGAAACACTGACATAATTGATCATGTTAACATATTTTCCCA 1016
Query 1519 TCTCTTAAAAGGCAAGAAAACAGGAAG 1545
|||||| |||||||||||||| |||||
Sbjct 1017 TCTCTTGAAAGGCAAGAAAACGGGAAG 1043
Score = 165 bits (89), Expect = 1e-39
Identities = 107/116 (92%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1236 ACTCCGACTTCCATGACTTTGATAAAAATAGATTAGAGGAGTGCTTCGAGGCTAGGCAAA 1295
|||||||||||||||||||||||||||| |||| | || ||||||| |||||||||||||
Sbjct 778 ACTCCGACTTCCATGACTTTGATAAAAACAGATCAAAGAAGTGCTTTGAGGCTAGGCAAA 837
Query 1296 TATGGGCAATTTATGATGAAGATGATGGTATGCCACGCTTATATTGCATGGTCCGG 1351
||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 838 TATGGGCAATTTAAGATGAAGATGATGGTATGTTGCGCTTATATTGCATGGTCCGG 893
Score = 163 bits (88), Expect = 4e-39
Identities = 115/128 (90%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 1075 ATTGGCTTCAGAAGCTGCTGCGACAGCTACAGAGGACGCGACTCCCCTTGATGAAGTAAG 1134
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 651 ATTGGCTTCAGAAGCTGCAGCGGCGGCTACAGAGGACGCGACTCCCCTTGATGAAGTAAG 710
Query 1135 TGCGTCCTCCAAGGTGGGGGATGATGTATCCAGATTAGGAA-AAAATGTTTCTTTTGGTC 1193
||| ||| |||||| ||||||||| |||||||| ||| || |||||||||| | |||||
Sbjct 711 TGCCCCCTACAAGGTAGGGGATGATATATCCAGAATAG-AACAAAATGTTTCCTCTGGTC 769
Query 1194 ATCCACCT 1201
||||||||
Sbjct 770 ATCCACCT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5