BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35760.1
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926111 jgi|Araly1|926111|scaffold_201672.1 172 2e-42
Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683 172 2e-42
Ahg921962 jgi|Araly1|921962|scaffold_103243.1 132 3e-30
Ahg932458 jgi|Araly1|932458|scaffold_400446.1 124 5e-28
Ahg894136 jgi|Araly1|894136|Al_scaffold_0006_2132 119 2e-26
> Ahg926111 jgi|Araly1|926111|scaffold_201672.1
Length=1166
Score = 172 bits (93), Expect = 2e-42
Identities = 163/196 (83%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 197 CCGTGGAGCACCTTT-TCAAAGGCTCATATGCATTGTTTGCAATAGCCGTTTATGACCA- 254
|||||||||| ||| ||||| |||| | ||| || || || |||||| ||||||||
Sbjct 898 CCGTGGAGCA-TTTTCTCAAAAGCTCGTTTGCGTTATTCGCGCGAGCCGTATATGACCAT 956
Query 255 CACGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCCAAAGCCTCAAC 314
| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 957 C-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCTATGGCCTCAAA 1015
Query 315 AGATTTTTCAAACCTTGTAAACTTTTTTAAAAGTGAACACC-TCTTTGCAAAACTCATGA 373
||||| ||||||| ||| |||| ||||||| | ||| || | | |||| ||||||||||
Sbjct 1016 AGATTCTTCAAACTTTGCAAACCTTTTTAAGA-TGAGCATCAT-TTTGGAAAACTCATGG 1073
Query 374 AGCCTCTATCTTCATT 389
||||| |||||| |||
Sbjct 1074 AGCCTTTATCTTTATT 1089
Score = 124 bits (67), Expect = 5e-28
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 5 CCAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAA 64
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 658 CCAAAAGGGTGAAGAAGAACGGCATTATGATCCCGTCTCTACGGAGCGGTGGTTACCGAA 717
Query 65 GCTTCTTCAACTCTCTACCTCC 86
||||||||||||||||| ||||
Sbjct 718 GCTTCTTCAACTCTCTATCTCC 739
> Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683
Length=1920
Score = 172 bits (93), Expect = 2e-42
Identities = 163/196 (83%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 197 CCGTGGAGCACCTTT-TCAAAGGCTCATATGCATTGTTTGCAATAGCCGTTTATGACCA- 254
|||||||||| ||| ||||| |||| | ||| || || || |||||| ||||||||
Sbjct 1673 CCGTGGAGCA-TTTTCTCAAAAGCTCGTTTGCGTTATTCGCGCGAGCCGTCTATGACCAT 1731
Query 255 CACGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCCAAAGCCTCAAC 314
| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1732 C-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCTATGGCCTCAAA 1790
Query 315 AGATTTTTCAAACCTTGTAAACTTTTTTAAAAGTGAACACC-TCTTTGCAAAACTCATGA 373
||||| ||||||| ||| |||| ||||||| | ||| || | | |||| ||||||||||
Sbjct 1791 AGATTCTTCAAACTTTGCAAACCTTTTTAAGA-TGAGCATCAT-TTTGGAAAACTCATGG 1848
Query 374 AGCCTCTATCTTCATT 389
||||| |||||| |||
Sbjct 1849 AGCCTTTATCTTTATT 1864
Score = 124 bits (67), Expect = 5e-28
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 5 CCAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAA 64
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 1433 CCAAAAGGGTGAAGAAGAACGGCATTATGATCCCGTCTCTACGGAGCGGTGGTTACCGAA 1492
Query 65 GCTTCTTCAACTCTCTACCTCC 86
||||||||||||||||| ||||
Sbjct 1493 GCTTCTTCAACTCTCTATCTCC 1514
> Ahg921962 jgi|Araly1|921962|scaffold_103243.1
Length=346
Score = 132 bits (71), Expect = 3e-30
Identities = 116/137 (85%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 197 CCGTGGAGCACCTTT-TCAAAGGCTCATATGCATTGTTTGCAATAGCCGTTTATGACCA- 254
|||||||||| ||| ||||| |||| | ||| || || || |||||| ||||||||
Sbjct 88 CCGTGGAGCA-TTTTCTCAAAAGCTCGTTTGCGTTATTCGCGCGAGCCGTCTATGACCAT 146
Query 255 CACGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCCAAAG-CCTCAA 313
| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 147 C-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAATCCGCTAT-GTCCTCAA 204
Query 314 CAGATTTTTCAAACCTT 330
||||| ||||||||||
Sbjct 205 AAGATTCTTCAAACCTT 221
> Ahg932458 jgi|Araly1|932458|scaffold_400446.1
Length=1702
Score = 124 bits (67), Expect = 5e-28
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 5 CCAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAA 64
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 1195 CCAAAAGGGTGAAGAAGAACGGCATTATGATCCCGTCTCTACGGAGCGGTGGTTACCGAA 1254
Query 65 GCTTCTTCAACTCTCTACCTCC 86
||||||||||||||||| ||||
Sbjct 1255 GCTTCTTCAACTCTCTATCTCC 1276
> Ahg894136 jgi|Araly1|894136|Al_scaffold_0006_2132
Length=1197
Score = 119 bits (64), Expect = 2e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 6 CAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAAG 65
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 744 CAAAAGAGTGAAGAAGAACGGCATTATGATCCCGTCTCCACGGAGCGGTGGTTACCGAAG 803
Query 66 CTTCTTCAAC 75
||||||||||
Sbjct 804 CTTCTTCAAC 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19459350390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5