BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35770.1 Length=1793 Score E Sequences producing significant alignments: (Bits) Value Ahg891186 jgi|Araly1|891186|Al_scaffold_0007_3172 2030 0.0 > Ahg891186 jgi|Araly1|891186|Al_scaffold_0007_3172 Length=1350 Score = 2030 bits (1099), Expect = 0.0 Identities = 1270/1352 (94%), Gaps = 13/1352 (1%) Strand=Plus/Plus Query 82 ATGTCTACCTCCTCCTCTTCTTCCGACAAC---G-----GA-GCCGGTGGAAGCGGCGGC 132 |||||||||||||||||||||||| ||||| | || |||||||||||||||||| Sbjct 1 ATGTCTACCTCCTCCTCTTCTTCCAACAACGGAGACTCCGACGCCGGTGGAAGCGGCGGC 60 Query 133 GTTTTCGAGGCCCCATCTCCATCCCGCCCTCGCCGCGGAGCCAACGATGTTTGGCCGGAG 192 |||||||||||||| ||||| || ||||| ||||| || || ||||| || ||||||||| Sbjct 61 GTTTTCGAGGCCCCTTCTCCTTCTCGCCCCCGCCGTGGCGCTAACGACGTCTGGCCGGAG 120 Query 193 CCTTTTCTTGAATCTCTCGCCGTTCAAGTTGCCGTTAACGCTTCCACATCCGCCGGCCTC 252 |||||||||||||||||||||||||| || |||||||| |||||| ||||| |||||||| Sbjct 121 CCTTTTCTTGAATCTCTCGCCGTTCAGGTCGCCGTTAATGCTTCCTCATCCTCCGGCCTC 180 Query 253 CTCGCCGCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCACGCTGTC 312 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CTCGCCTCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCAAGCTGTC 240 Query 313 TCTCGCTCCGACCATCTATGGCAACTACTATCTCGCCAAGTTTGGGCAAGAACACATTTG 372 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 241 TCTCGCTCCGACCATCTATGGCAACTCCTCTCTCGCCAAGTTTGGGCAAGAACACATTTG 300 Query 373 ATGCACGACACGTGGCGGGACGAGTTCATCTACCGTCATCGGACGGCTAGAAACTTCCGG 432 |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 301 ATGCACGACACGTGGCGGGATGAGTTCATCTACCGTCATCGAACGGCCAGAAACTTCCGG 360 Query 433 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 420 Query 493 AGTCTCTCTTGCCGTTGTCTCACCCTCTCAGACCTCTACTTAGCCGCAGGGTTCGCCGAC 552 |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 421 AGTCTCTCATGCCGTTGTCTCACTCTCTCCGACCTCTACTTAGCCGCAGGGTTCGCCGAC 480 Query 553 GGAACCGTCCGGCTTTTTCTTTTAAACAACCGACTCCACGTCAGGACCT-TACGGCCACC 611 ||||||||||| || ||||||||||| | ||| ||||||||||||| || |||||||||| Sbjct 481 GGAACCGTCCGCCTCTTTCTTTTAAATAGCCGTCTCCACGTCAGGA-CTCTACGGCCACC 539 Query 612 TCTACGTGACCGCTTTGGTAGATTCTCACGAGCCGTCTCAGGCATTGTTATCTCCGACTC 671 |||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||| Sbjct 540 TCTACGTGACCGCTTTGGCAGATTCTCACGAGCCGTCTCGGGCATTTTTATATCCGACTC 599 Query 672 AAGGCTCACGTTCGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGTGTTGG 731 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 AAGACTCACGTTTGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGCGTTGG 659 Query 732 TCACACACGCACGGCTTACGCAGGAGATATAGTTAACGACGGTGCGTTGGTAGATTTCAC 791 ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 660 TCATACACGCACGGCTTACGCCGGAGATATAGTTAACGACGGTGCTTTGGTAGATTTCAC 719 Query 792 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCGGGTGTGCCAGGTCGTGCCTTTCACAT 851 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 720 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCTGGTGTACCAGGTCGTGCCTTTCACAT 779 Query 852 ATGGGACTGTAACAGCGAAGAGACAACATTCGTCGGTGGTACACTCACCGACCCTGAAGC 911 |||||||||||||||||| ||||||||||||||||||||| ||||||| || || ||||| Sbjct 780 ATGGGACTGTAACAGCGAGGAGACAACATTCGTCGGTGGTTCACTCACTGATCCAGAAGC 839 Query 912 TGTCATGGGATGGCACACGTTAACAGAGCTAACAACGTCCCTTGGCCGTCTCAGAATCTC 971 |||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 840 CGTCATGGGTTGGCACACGTTAACAGAGCTAACAACGTCGCTTGGCCGACTAAGAATCTC 899 Query 972 CGGTAACGAGACGGCGGTAGCATGCACGAGATGGAGAATCATGGTGATCGATCTAAGAAA 1031 ||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 CGGCAACGAGACAGCCGTAGCATGCACGAGATGGAGGATCATGGTGATCGATCTAAGAAA 959 Query 1032 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTGACAGGCTT 1091 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTAACAGGCTT 1019 Query 1092 CGATGCCAACGACGAAGCGTACGTTAGATTGGACAGTAGAGGAAACGCTAGCGTGCGAAG 1151 ||| |||||||||||||||||| ||||| ||||||||||||| ||||| || ||||| || Sbjct 1020 CGACGCCAACGACGAAGCGTACCTTAGAATGGACAGTAGAGGTAACGCGAGAGTGCGCAG 1079 Query 1152 GGTGAACACGCAACAAACGGTGTGTGAGTTCCGTGTTAGTGGAGCGGCGCAGAGAAGAGT 1211 ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1080 GGTGAACACACTACAAACGGTGTGTGAGTTCCGTGTGAGTGGAGCGGCGCAGAGAAGAGT 1139 Query 1212 AATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1271 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1199 Query 1272 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1259 Query 1332 CATTGTTGCCGATGATAGACATGTGGCGGTTGCGTCAG-CTTCATCAACGGCTCAGAGTA 1390 ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 1260 CATTGTTGCCGATGATAGACATGTGGCGGTTGCTTC-GTCTTCATCAACGGCTCAGAGTA 1318 Query 1391 TTATACATCTATGGGATTTCGGTGCACTGTAG 1422 |||||||||||||||||||||||||||||||| Sbjct 1319 TTATACATCTATGGGATTTCGGTGCACTGTAG 1350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67305462915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5