BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35770.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891186 jgi|Araly1|891186|Al_scaffold_0007_3172 2030 0.0
> Ahg891186 jgi|Araly1|891186|Al_scaffold_0007_3172
Length=1350
Score = 2030 bits (1099), Expect = 0.0
Identities = 1270/1352 (94%), Gaps = 13/1352 (1%)
Strand=Plus/Plus
Query 82 ATGTCTACCTCCTCCTCTTCTTCCGACAAC---G-----GA-GCCGGTGGAAGCGGCGGC 132
|||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 1 ATGTCTACCTCCTCCTCTTCTTCCAACAACGGAGACTCCGACGCCGGTGGAAGCGGCGGC 60
Query 133 GTTTTCGAGGCCCCATCTCCATCCCGCCCTCGCCGCGGAGCCAACGATGTTTGGCCGGAG 192
|||||||||||||| ||||| || ||||| ||||| || || ||||| || |||||||||
Sbjct 61 GTTTTCGAGGCCCCTTCTCCTTCTCGCCCCCGCCGTGGCGCTAACGACGTCTGGCCGGAG 120
Query 193 CCTTTTCTTGAATCTCTCGCCGTTCAAGTTGCCGTTAACGCTTCCACATCCGCCGGCCTC 252
|||||||||||||||||||||||||| || |||||||| |||||| ||||| ||||||||
Sbjct 121 CCTTTTCTTGAATCTCTCGCCGTTCAGGTCGCCGTTAATGCTTCCTCATCCTCCGGCCTC 180
Query 253 CTCGCCGCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCACGCTGTC 312
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTCGCCTCAGCTCCGGCTCTTGCCAACGTTTTTCGGGTTTGCACCACGTGGCAAGCTGTC 240
Query 313 TCTCGCTCCGACCATCTATGGCAACTACTATCTCGCCAAGTTTGGGCAAGAACACATTTG 372
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 241 TCTCGCTCCGACCATCTATGGCAACTCCTCTCTCGCCAAGTTTGGGCAAGAACACATTTG 300
Query 373 ATGCACGACACGTGGCGGGACGAGTTCATCTACCGTCATCGGACGGCTAGAAACTTCCGG 432
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 ATGCACGACACGTGGCGGGATGAGTTCATCTACCGTCATCGAACGGCCAGAAACTTCCGG 360
Query 433 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGCGTACTCACACCTACTTCACTCTCCAATTTGACCCGTCTGATGTGGACGAGCCTGAT 420
Query 493 AGTCTCTCTTGCCGTTGTCTCACCCTCTCAGACCTCTACTTAGCCGCAGGGTTCGCCGAC 552
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 421 AGTCTCTCATGCCGTTGTCTCACTCTCTCCGACCTCTACTTAGCCGCAGGGTTCGCCGAC 480
Query 553 GGAACCGTCCGGCTTTTTCTTTTAAACAACCGACTCCACGTCAGGACCT-TACGGCCACC 611
||||||||||| || ||||||||||| | ||| ||||||||||||| || ||||||||||
Sbjct 481 GGAACCGTCCGCCTCTTTCTTTTAAATAGCCGTCTCCACGTCAGGA-CTCTACGGCCACC 539
Query 612 TCTACGTGACCGCTTTGGTAGATTCTCACGAGCCGTCTCAGGCATTGTTATCTCCGACTC 671
|||||||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 540 TCTACGTGACCGCTTTGGCAGATTCTCACGAGCCGTCTCGGGCATTTTTATATCCGACTC 599
Query 672 AAGGCTCACGTTCGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGTGTTGG 731
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 AAGACTCACGTTTGCTACGATGGACGGAGACATCCACGTGGCGGAAATAGACGGCGTTGG 659
Query 732 TCACACACGCACGGCTTACGCAGGAGATATAGTTAACGACGGTGCGTTGGTAGATTTCAC 791
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCATACACGCACGGCTTACGCCGGAGATATAGTTAACGACGGTGCTTTGGTAGATTTCAC 719
Query 792 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCGGGTGTGCCAGGTCGTGCCTTTCACAT 851
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 720 TGGCTGTGGACGTTGGTGGGTCGGTCTTTTCGCTGGTGTACCAGGTCGTGCCTTTCACAT 779
Query 852 ATGGGACTGTAACAGCGAAGAGACAACATTCGTCGGTGGTACACTCACCGACCCTGAAGC 911
|||||||||||||||||| ||||||||||||||||||||| ||||||| || || |||||
Sbjct 780 ATGGGACTGTAACAGCGAGGAGACAACATTCGTCGGTGGTTCACTCACTGATCCAGAAGC 839
Query 912 TGTCATGGGATGGCACACGTTAACAGAGCTAACAACGTCCCTTGGCCGTCTCAGAATCTC 971
|||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 840 CGTCATGGGTTGGCACACGTTAACAGAGCTAACAACGTCGCTTGGCCGACTAAGAATCTC 899
Query 972 CGGTAACGAGACGGCGGTAGCATGCACGAGATGGAGAATCATGGTGATCGATCTAAGAAA 1031
||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 CGGCAACGAGACAGCCGTAGCATGCACGAGATGGAGGATCATGGTGATCGATCTAAGAAA 959
Query 1032 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTGACAGGCTT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 CCAAGGAGTGATCATCGGAGAAGACGAAGAGCAACGTAGAGGACTAATAGTAACAGGCTT 1019
Query 1092 CGATGCCAACGACGAAGCGTACGTTAGATTGGACAGTAGAGGAAACGCTAGCGTGCGAAG 1151
||| |||||||||||||||||| ||||| ||||||||||||| ||||| || ||||| ||
Sbjct 1020 CGACGCCAACGACGAAGCGTACCTTAGAATGGACAGTAGAGGTAACGCGAGAGTGCGCAG 1079
Query 1152 GGTGAACACGCAACAAACGGTGTGTGAGTTCCGTGTTAGTGGAGCGGCGCAGAGAAGAGT 1211
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 GGTGAACACACTACAAACGGTGTGTGAGTTCCGTGTGAGTGGAGCGGCGCAGAGAAGAGT 1139
Query 1212 AATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATGGGTTGTGTTAATAGACTGCACGCGCTAATGTGCGCAGGTGGTATAATGCGCGTGTG 1199
Query 1272 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGAGGTAGAGAGAGGAGAGTATCTGTACAGTATTAGGGAGAGAGTAGGAGAAGTTGACGC 1259
Query 1332 CATTGTTGCCGATGATAGACATGTGGCGGTTGCGTCAG-CTTCATCAACGGCTCAGAGTA 1390
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1260 CATTGTTGCCGATGATAGACATGTGGCGGTTGCTTC-GTCTTCATCAACGGCTCAGAGTA 1318
Query 1391 TTATACATCTATGGGATTTCGGTGCACTGTAG 1422
||||||||||||||||||||||||||||||||
Sbjct 1319 TTATACATCTATGGGATTTCGGTGCACTGTAG 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5