BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35780.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947990 jgi|Araly1|947990|scaffold_704219.1 717 0.0
Ahg330612 jgi|Araly1|330612|fgenesh1_pm.C_scaffold_7002839 638 0.0
> Ahg947990 jgi|Araly1|947990|scaffold_704219.1
Length=1214
Score = 717 bits (388), Expect = 0.0
Identities = 547/621 (88%), Gaps = 21/621 (3%)
Strand=Plus/Plus
Query 402 CTAAGTTGGGGAAGACAGAGAAGAAAAACCTAACAAACCCTAATTACCAATCTTCATCTT 461
|||||| | ||||||||||| || | ||||| |||||||||||||||| ||||| |||
Sbjct 570 CTAAGTCCGAGAAGACAGAGACGAGAGACCTACCAAACCCTAATTACCATTCTTCTTCTC 629
Query 462 CGTCTTCATGCCTAACGGAGAACAAAAGCCGCAAGAGGCGTGCCGTGCAGCAGAGGAAGA 521
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 630 CATCTTCATGCCTAACGGAGAACAAAAGCCGCAAGAGGCGTGTCGTGCAACAGAGGAAGA 689
Query 522 GTGGTAAACTCAAGAAAGCGAGGGTTGTTTCTTTGCCAAGGAT-GTCTATAGAGACGCCA 580
|||||||| |||||||||| | ||||| | |||||| |||| | ||||| |||||||||
Sbjct 690 GTGGTAAATTCAAGAAAGCAAAGGTTGCTCCTTTGCTAAGG-TGGTCTACAGAGACGCCT 748
Query 581 GAGTGGGTTTTCCAGGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAGGC-TGAT 639
|||||||||||| ||||||||||||| ||||| |||||||| |||| ||||| || ||||
Sbjct 749 GAGTGGGTTTTCGAGGTGATGAGATATATGAAAGCTGATGCCGAAAACCCGA-GCTTGAT 807
Query 640 ATTTGAGAGGACTCTGTTC-AATAGTGATGTCAAA-TCAGGCCTGAGCCGTCTCTTAATC 697
|||| |||| ||||| | ||||||||||||||| | |||| ||||||||||||| ||
Sbjct 808 CTTTGTGAGGGCTCTG-ACAAATAGTGATGTCAAAGT-GGGCCAGAGCCGTCTCTTACTC 865
Query 698 CCTTTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCGGAGTGTAGAGCCATACAG 757
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 866 CCATTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCAGAGTGTCGAGCCATACAG 925
Query 758 AAAGACGAAGAC--A-ACGAAGATG-A-CA-A---GAATATTGGTGTGGGAACGATTCTT 808
|||||||||||| | ||||||| | | | | |||||||||||||||||||||||||
Sbjct 926 AAAGACGAAGACGAAGACGAAGACGAAGAAGACGCGAATATTGGTGTGGGAACGATTCTT 985
Query 809 GTGAACCAAAGATCT-AAAATGTGGGGTTTGCGTTTCAAGATATGGGCGATGGAGAAGGA 867
||||| ||||| ||| |||| ||||||||| ||||| |||||||||| ||||||||||||
Sbjct 986 GTGAATCAAAGGTCTGAAAA-GTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGGA 1044
Query 868 CTCTGGACACGGAACATTGAATTACATTTTGAATTGGGGTTGGAACGATGTAGTCAAAGG 927
|| |||||||||||| ||||||||| ||||||||||||||||||||| || ||||| ||
Sbjct 1045 CTATGGACACGGAACCTTGAATTACGCTTTGAATTGGGGTTGGAACGAAGTTGTCAAGGG 1104
Query 928 TAACGGCTTAAAGGCTGGCGACAATATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCT 987
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1105 TAACGGCTTAAAAGCCGGCGACAAAATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCT 1164
Query 988 CTGCTTT-CCTCTTGAGACAT 1007
||||||| || ||||||||||
Sbjct 1165 CTGCTTTGCC-CTTGAGACAT 1184
Score = 187 bits (101), Expect = 1e-46
Identities = 272/347 (78%), Gaps = 42/347 (12%)
Strand=Plus/Plus
Query 14 ATCTCACGGATTCAGGGAAGGATATGTGTTCG-AGTCTTTGTTTACTGGCCGA-A-GTTG 70
|||||||||||||||||||||||||||| ||| | ||| ||||| |||| || | | |
Sbjct 45 ATCTCACGGATTCAGGGAAGGATATGTGGTCGGA-TCTGTGTTTGCTGGTGGATACG--G 101
Query 71 CGGTTATGGTTGCGGAAGAAGAACAAT-T--TCGTCGTCTT-C----T--AA-----A-- 113
| |||||||||| ||||||||||||| | ||||| |||| | | || |
Sbjct 102 CAGTTATGGTTGAGGAAGAAGAACAACGTCATCGTCTTCTTGCAGAATCCAAGTGCCATA 161
Query 114 -GACTGTCTCTAAAGAAGAAGATAGCGACAAGAGTTTCTTCTATCGTTTCCCGAG-AA-A 170
|||||||||| |||||||||||||| | ||||| |||||||||| ||||||||| || |
Sbjct 162 AGACTGTCTCTGAAGAAGAAGATAGCCAGAAGAGATTCTTCTATCTTTTCCCGAGGAAGA 221
Query 171 AATCAGATCGTCTTTGGTGAAGAGAAGATACACGCAGCAAAACCCTAACGGGGCTTCTAC 230
|| || || |||||||| |||| ||| ||||| || ||||||||||| |||| ||||||
Sbjct 222 AA--AGGTCTTCTTTGGTAAAGATAAGTTACACACAACAAAACCCTAATGGGGTTTCTAC 279
Query 231 -T-T-CTTC---AGCGGTTCTCGATCTGAACCTAATCAC-CACTGATTACGACTTGAAAA 283
| | |||| | || |||||||||| ||||||| | | |||||||||||| |||||
Sbjct 280 GTCTTCTTCTTCATCGCTTCTCGATCTTAACCTAACC-CTCACTGATTACGAGACGAAAA 338
Query 284 CC-CAACAAAACCCTAGTTTTGATGAGCCGTTAGTTGGTGTATAATG 329
| || |||||||||||||||||| ||| || ||||||||| |||
Sbjct 339 ACGCA-CAAAACCCTAGTTTTGATAAGC--TT--TTGGTGTATGATG 380
> Ahg330612 jgi|Araly1|330612|fgenesh1_pm.C_scaffold_7002839
Length=1140
Score = 638 bits (345), Expect = 0.0
Identities = 516/598 (86%), Gaps = 14/598 (2%)
Strand=Plus/Plus
Query 415 GACAGAGAAGAAAAACCTAACAAACCCTAATTACCAATCTTCATCTTCGTCTTCATGCCT 474
|||||||| |||| || ||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 537 GACAGAGACGAAAGACATAACAAACCCTAATTACCAATCTTCTTCTCCGTCTTCGTGCCT 596
Query 475 AACGGAGAACAAAAGCCGCAAGAGGCGTGCCGTGCAGCAGAGGAAGAG---TGGTAAACT 531
||| ||||||| |||| ||||||||||||| ||| | ||||| ||||| ||| | |
Sbjct 597 AACAGAGAACACAAGCAGCAAGAGGCGTGCGGTGGAACAGAGAAAGAGCAAGGGTGGATT 656
Query 532 CAAGAAAGCGAGGGTTGTTTCTTT-GCCAAG-GATGTCTATAGAGACGCCAGAGTGGGTT 589
||||||| | | ||||| | |||| ||| | | || | |||||| ||||||||||||
Sbjct 657 CAAGAAAACAAAGGTTG-TACTTTATCCATGCGCGGT-GAGAGAGACACCAGAGTGGGTT 714
Query 590 TTCCAGGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAGGCTGATATTTGAGAGG 649
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 715 TTCCAGGTGATGAGATACATGAACGCGGATGCCGAAAACCCGAGGCTGATATTTGAGAGG 774
Query 650 ACTCTGTTCAATAGTGATGTCAAATCAGGCCTGAGCCGTCTCTTAATCCCTTTCCAGCAG 709
| ||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||
Sbjct 775 ATTCTGTTCAATAGTGATGTCAACTCAAACTTGAGCCGTCTCTTAATCCCTTTTCAGAAG 834
Query 710 CTAATCAGAAACGACTTCTTGACGCCTGCGGAGTGTAGAGCCATACAGAAAGACGAAGAC 769
||||||||||||||||||||||||||| ||||||| ||||| || ||| ||| ||||||
Sbjct 835 CTAATCAGAAACGACTTCTTGACGCCTTTGGAGTGTCGAGCCTTAGAGAGAGATGAAGAC 894
Query 770 AACGAAGATGACA-AGAATATTGGTGTGGGAACGATTCTTGTGAACCAAAGATCTAAAAT 828
|| |||||||| | ||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 895 AATGAAGATGA-AGAGAATATTGGTGTGGGAACTATTCTTGTGAATCAAAGGTTTAAAAT 953
Query 829 GTGGGGTTTGCGTTTCAAGATATGGGCGATGGAGAAG--G-ACTCTGGACACGGAACATT 885
||||||||| ||||| |||||||||| |||||||||| | | |||||||| ||||| ||
Sbjct 954 GTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGAAGGATTCTGGACATGGAACCTT 1013
Query 886 GAATTACATTTTGAATTGGGGTTGGAACGATGTAGTCAAAGGTAACGGCTT-AAAGGCTG 944
|||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||| |
Sbjct 1014 GAATTACACTTTGAATTGGGGTTGGAACGATGTAGTCAAGGGTAATGACTTGAAAGCCCA 1073
Query 945 GCGACAATATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTCCTCTTGA 1002
||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1074 T-GACAAGATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTTTGCTTTGCACTTGA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5