BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35790.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493636 jgi|Araly1|493636|fgenesh2_kg.7__3069__AT5G35790.1 2857 0.0
> Ahg493636 jgi|Araly1|493636|fgenesh2_kg.7__3069__AT5G35790.1
Length=1848
Score = 2857 bits (1547), Expect = 0.0
Identities = 1743/1838 (95%), Gaps = 11/1838 (1%)
Strand=Plus/Plus
Query 27 catcatcatcaCATTTGTTTTGACGCTCCAAGAAAATTTGCATGGCGACACATTCTATGA 86
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CATCATC-TCACAATTGTTTTGACGCTCCAAGAAAATTTGCATGGCGACACATTCTATGA 69
Query 87 TCATTCCTTCTCCTT-CT--TCTTCTTCCTCGTCTCTCGCTACTGCT--G-CGTCTCCGT 140
||||||||||| ||| || |||||||||||| |||||||| ||||| | |||||||||
Sbjct 70 TCATTCCTTCTTCTTCCTCATCTTCTTCCTCGGCTCTCGCTGCTGCTGCGACGTCTCCGT 129
Query 141 TTAAAGAGACTCTACCACTCTTTAGTAGATCTCTCACATTCCCGAGAAAATCCTTG-TTT 199
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 130 TTAAAGAGACTCTACCACTCTTTGGTAGATCTCTCACATTCCAGAGAAAATCC-TGTTTT 188
Query 200 TCTCAGGTTCGCTTGAGATTCTTCGCCGAGAAACATTCTCAGCTTG-ATACTTCAAATGG 258
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 189 TCTCAGGTTCGCTTGAGATTCTTCGCCGAGAAACATTCTCAGCTTGAAT-CTTCAAATGG 247
Query 259 GTGTGCCACTAATTTCGCTTCTTTACAAGATTCTGGAGATCAACTTACAGAGGAACATGT 318
|||||| || |||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 248 GTGTGCTACAAATTTCGCTTCTTTACAAGACTCTGGAGATCATCCAACAGAGGAACATGT 307
Query 319 TACAAAAGGAGAGTCTACTCTTAGTATTACAGTTGTTGGAGCGTCAGGGGACTTAGCCAA 378
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 308 TACAAAAGGAGAGTCTACACTTAGTATTACAGTCGTTGGAGCGTCGGGGGACTTGGCCAA 367
Query 379 GAAGAAGATATTTCCTGCATTGTTTGCTCTCTTTTATGAGGGTTGTCTTCCTCAGGACTT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GAAGAAGATATTTCCTGCATTGTTTGCTCTCTTTTATGAGGGTTGTCTTCCTCAGGACTT 427
Query 439 TTCTGTTTTTGGTTATGCTCGGACTAAACTCACTCATGAAGAGCTTCGTGACATGATTAG 498
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 428 TTCTGTTTTTGGTTATGCTCGGACTAAACTCACTCATGAGGAGCTTCGTGATATGATTAG 487
Query 499 TAGTACTTTAACTTGCCGGATTGATCAGAGGGAAAAATGTGGGGATAAGATGGAGCAGTT 558
||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 488 TAGCACTTTAACTTGCCGGATTGATCAAAGGGAAAATTGTGGGGATAAGATGGATCAGTT 547
Query 559 CTTGAAAAGATGCTTTTACCATTCGGGTCAGTATAACTCGGAAGAGGATTTTGCGGAACT 618
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 548 CTTGAAAAGATGCTTTTACCATTCGGGCCAGTATAATTCTGAAGAGGATTTTGCAGAACT 607
Query 619 AAACAAGAAGCTCAAAGAGAAAGAGGCAGGAAAGATATCAAACAGGCTGTACTATTTGTC 678
||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 608 AAACACCAAGCTTAAAGAGAAAGAGGCAGGAAAGCTAGCAAACAGGCTGTACTATTTGTC 667
Query 679 GATACCCCCAAACATATTCGTTGATGTGGTTAGGTGTGCAAGTCTTAGAGCCTCCTCAGA 738
|||||| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct 668 GATACCACCAAATATATTCGTCGATGTGGTAAGGTGTGCAAGCCTTAGAGCATCCTCAGC 727
Query 739 GAATGGCTGGACAAGGGTCATTGTGGAAAAGCCATTTGGTCGTGACTCTGAATCATCCGG 798
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 728 TAATGGCTGGACAAGGGTCATTGTCGAAAAGCCATTTGGTCGTGACTCTGAATCATCTGG 787
Query 799 AGAGTTAACTAGATGTCTGAAACAGTATCTTACAGAGGAGCAAATCTTCAGGATTGATCA 858
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 788 AGAGTTAACTAGATGTCTGAAACAGTATCTTACAGAAGAGCAAATTTTCAGGATTGACCA 847
Query 859 CTATTTGGGAAAGGAGCTTGTTGAGAACCTTTCAGTGCTCCGATTCTCAAATCTTGTTTT 918
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 848 CTATTTAGGAAAGGAGCTTGTTGAGAACCTTTCAGTGCTTCGATTCTCGAATCTCGTTTT 907
Query 919 CGAGCCTCTGTGGTCAAGAAATTACATACGCAACGTTCAGCTGATTTTTTCTGAGGATTT 978
|| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 908 TGAACCTCTATGGTCGAGAAATTACATACGCAATGTTCAACTGATTTTTTCTGAAGATTT 967
Query 979 CGGAACAGAAGGGCGTGGAGGTTACTTTGATCAATATGGAATCATACGAGACATCATGCA 1038
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 968 TGGAACAGAAGGGCGTGGAGGTTACTTTGATCAGTATGGAATCATACGAGACATCATGCA 1027
Query 1039 AAACCATCTCTTGCAAATACTTGCACTTTTTGCAATGGAGACGCCAGTGAGCTTAGATGC 1098
||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 1028 AAACCATCTCTTGCAAATACTCGCACTTTTCGCAATGGAGACACCTGTGAGCTTAGATGC 1087
Query 1099 TGAGGACATAAGAAGTGAAAAGGTGAAAGTTTTGAGATCAATGAAACCGTTGCGGCTTGA 1158
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1088 TGAGGACATAAGAAGCGAAAAGGTGAAAGTTTTGAGATCAATGAAACCGTTACTGCTTGA 1147
Query 1159 AGATGTGGTTGTTGGTCAATACAAAGGCCATAACAAGGGAGGAAAAACTTATCCAGGTTA 1218
| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1148 AAATGTGGTTGTTGGTCAATACAAAGGGCATAACAAGGGAGGAAAGACTTATCCAGGTTA 1207
Query 1219 TACAGACGATCCAACGGTTCCAAATCACAGTCTCACTCCTACATTTGCTGCAGCAGCCAT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TACAGACGATCCAACGGTTCCAAATCACAGTCTCACTCCTACATTTGCTGCAGCAGCCAT 1267
Query 1279 GTTCATCAACAATGCGAGATGGGACGGTGTTCCTTTTCTTATGAAAGCTGGAAAAGCTCT 1338
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1268 GTTCATCAACAATGCGAGATGGGACGGTGTTCCTTTTCTTATGAAAGCCGGAAAAGCTCT 1327
Query 1339 CCATACCAGAGGAGCAGAGATCAGAGTTCAGTTCAGACATGTCCCAGGAAACTTGTACAA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 CCATACCAGAGGAGCAGAGATCAGAGTTCAGTTCAGACATGTCCCAGGAAACTTGTACAA 1387
Query 1399 GAAAAGTTTTGCTACTAATTTAGACAATGCAACAAATGAACTAGTGATTAGAGTTCAGCC 1458
||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1388 GAAAAATTTTGCGACTAATTTAGACAATGCAACTAATGAACTAGTGATCAGAGTTCAGCC 1447
Query 1459 TGATGAAGGGATATACCTGAGGATCAACAACAAAGTTCCTGGTCTTGGAATGAGACTAGA 1518
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1448 TGATGAAGGCATATACCTGAGGATCAACAACAAAGTCCCTGGTCTTGGAATGAGACTAGA 1507
Query 1519 TCGCAGCGACCTTAACCTTCTATATCGATCCAGGTATCCAAGAGAGATACCAGATGCATA 1578
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1508 TCGCAGCGACCTTAACCTTCTATACCGATCCAGGTATCCAAGAGAGATACCAGATGCATA 1567
Query 1579 TGAAAGACTGCTTCTCGATGCAATCGAAGGAGAGAGGAGGTTGTTTATCAGAAGTGATGA 1638
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1568 TGAAAGACTGCTTCTTGATGCAATCGAAGGAGAGAGAAGGTTGTTTATCAGAAGTGATGA 1627
Query 1639 GCTAGATGCAGCATGGGATCTATTCACACCGGCTTTGAAGGAACTAGAGGAGAAGAAAAT 1698
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1628 GCTAGATGCAGCATGGGATTTATTCACACCGGCTTTGAAGGAACTCGAGGAGAAGAAAAT 1687
Query 1699 CATTCCTGAGCTCTATCCATATGGAAGCAGAGGTCCTGTTGGTGCACATTACCTTGCATC 1758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CATTCCTGAGCTCTATCCATATGGAAGCAGAGGTCCTGTTGGTGCACATTACCTTGCATC 1747
Query 1759 TAAGTACAATGTGAGATGGGGAGATCTTGGAGAAGCTTAAGCTTTCGACAGAAACAATAT 1818
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1748 TAAGTATAATGTGAGATGGGGAGATCTTGGAGAAGCTTAAGCTTTCGACAGAAACAAAAT 1807
Query 1819 GATTTGGTGTTAATATGAGTAAACTAACTTGTCGATAT 1856
||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1808 GATTTGGTGTTGATATGAGAAAACTTACTTGTCGATAT 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5