BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35796.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925419 jgi|Araly1|925419|scaffold_200980.1 734 0.0
Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515 717 0.0
Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316 300 2e-80
Ahg925502 jgi|Araly1|925502|scaffold_201063.1 285 6e-76
Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800 196 3e-49
Ahg907919 jgi|Araly1|907919|Al_scaffold_0002_1000 148 8e-35
> Ahg925419 jgi|Araly1|925419|scaffold_200980.1
Length=1126
Score = 734 bits (397), Expect = 0.0
Identities = 616/718 (86%), Gaps = 30/718 (4%)
Strand=Plus/Plus
Query 66 TCCGGTAGAGTGGCCAAGAGAGGGGCCAAGTTGTTAGA-AGAGCTCATCGAATTCGGCCA 124
|||| || |||| | ||||||| |||||||||||| | ||| || ||||||||||||||
Sbjct 72 TCCGATATAGTGTCTGAGAGAGGAGCCAAGTTGTTA-ACAGATCTGATCGAATTCGGCCA 130
Query 125 TGGCAAATCCAATCCCATCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAA 184
||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 131 TGGCATATCCAATCCCATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAA 190
Query 185 TTTCAGCGAC--TAATCTTGTTTCTCGAAAAGAATT-TTACTACC-ACTGGTATTCAGGT 240
|||||||||| ||||| |||||||||| || || ||||| || | ||||||||||||
Sbjct 191 TTTCAGCGACATTAATCGTGTTTCTCGATTAG-CTTATTACT-CCGATTGGTATTCAGGT 248
Query 241 AAGAACGAGAACCATCCCATGATTCTCATTAAGAAAGAT-CTTGGCTTGTCGAGTCTCTT 299
||||||||||||||||||||||| ||||| ||||||| | | | ||| | ||| |||
Sbjct 249 AAGAACGAGAACCATCCCATGATACTCATCAAGAAAGGTGC-TAACTTTTGGAG-CTC-- 304
Query 300 CAAAGTAGATCTTTTGAGCCGCGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAC 359
| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 305 GAGAGTAGATCTTTTGTGCCGGGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAA 364
Query 360 CTTTTTGAAATTGGTTGGATGTTGTCTTGAGTTTGAAGATTCAGTCAAAGTTTATCATGG 419
|||||||||||||||||||||||||||||||| |||||| |||||| |||||| | ||
Sbjct 365 CTTTTTGAAATTGGTTGGATGTTGTCTTGAGTCTGAAGAGCCAGTCATGGTTTATAACGG 424
Query 420 TGTTAAGAAACATTA-CAAATTAGAAATAAG-TGAACATCCATGGAAAAGGAGAATGAAG 477
|||||||||||| || | |||||| || || ||| || || ||||||||||||||||||
Sbjct 425 TGTTAAGAAACACTATC-GATTAGATAT-AGATGAGCAGCCGTGGAAAAGGAGAATGAAG 482
Query 478 ATAGTTGAAGATATTGCTACTGCTTTAGCTTACCTTCACACTGCGTTCCCTAGGCTCTTT 537
|||| |||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||
Sbjct 483 ATAGCAGAAGATATCGCTACTGCTTTTGCTTACCTTCACACTGCCTTCCCAAGGCCCTTC 542
Query 538 GTATATAGGATTTTGTCTCATTGGAATATTTTATTGGATGAAGATGGGGTCGCGAAGCTG 597
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 543 GTATATAGGATTTTGTATCCTTGGAATATCTTATTGGATGAAGATGGGGTCGCGAAGCTG 602
Query 598 ACTGATTTTTCTCACTGCGTCTGAATTCCAGAAGGAGACACATTTGTCCAGGTTGAGGCA 657
|||||||| |||| |||||||| ||| ||||||||||| |||||||| ||||||| ||
Sbjct 603 ACTGATTTCTCTCTCTGCGTCTCAATCCCAGAAGGAGAAACATTTGTTAAGGTTGA--CA 660
Query 658 GCAGAGGGATTCTATAGTTACTT-TGCCGATAATTAC-ATTAGCAGTGGCGTAGTCTCAG 715
| || | ||| |||||||| | || | || || |||||||||||||| ||||
Sbjct 661 --A-AG---T-CTACAGTTACTTGTATTTTTA-TGACGAT-AGCAGTGGCGTAGTATCAG 711
Query 716 AGAGAACAGATGTCTTTGGCTTTGGAATGTTTATGGGTATAAGGCTTCTATTAGGAAA 773
||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 712 AGAAAACAGATGTCTTTGCCTTTGGAATGTTTATGGGTCTAACGCTTCTATTAGGAAA 769
Score = 357 bits (193), Expect = 1e-97
Identities = 261/293 (89%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 856 TTTGCTGTCAACATTAAAGGAAGACCGATC-AATGGAAGAGATTGCAGATCCAAAGATGA 914
||||| ||||| ||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 800 TTTGCAGTCAAAATTAAAGGAAGACCG-TCGAATCGAAGAGATTGCAGATCCAAAGATGC 858
Query 915 TAGAAAAGATGGGTCA-AAT-TTCC-GAAGAAGAGCTTTGTCAAATGAAAGCTTTCCGAA 971
|||||||||||||| | ||| || | ||| ||||||||||||||||| ||||||||||||
Sbjct 859 TAGAAAAGATGGGTAATAATATTTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCCGAA 918
Query 972 TGTTGTCACTGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGTCA 1031
|| | |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 919 TGCTCTCACTGAGATGCATCGGTCCTAGGGAAGAAGTTCCAACGATGGTGGAAGTTGCCA 978
Query 1032 AAGAACTAAAGAAAATCCAAAGATCTCTTTTTAACGACTCTTCTTCTCTTTCTTCAGGTC 1091
||||||||||||| || ||||||||||||| ||||||||||||||||| |||| ||
Sbjct 979 AAGAACTAAAGAAGATTCAAAGATCTCTTTATAACGACTCTTCTTCTCCTTCTGGAG--- 1035
Query 1092 AAACCCAATTCAACTCTGCCCAAGACATTTCTTCCACAGTGGTCCTCTCAAAC 1144
||||||| ||| ||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 1036 AAACCCATTTCGACTCTCCCCAAGACATTTCTTCCTCAGTCGTCCTCTCAAAC 1088
> Ahg315482 jgi|Araly1|315482|fgenesh1_pm.C_scaffold_2000515
Length=1137
Score = 717 bits (388), Expect = 0.0
Identities = 608/710 (86%), Gaps = 31/710 (4%)
Strand=Plus/Plus
Query 82 AGAGAGGGGCCAAGTTGTTAG-AAGAGCTCATCGAATTCGGCCATGGCAAATCCAATCCC 140
|||||||||| | | |||| | |||| || |||||||| |||||||||| ||||||||||
Sbjct 44 AGAGAGGGGCGATGGTGTT-GAAAGATCTGATCGAATTAGGCCATGGCATATCCAATCCC 102
Query 141 ATCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAATTTCAGC-GA-CTAAT 198
|||||||||||||||| ||||||||||| ||| |||||||||||||||||| | |||||
Sbjct 103 ATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCAAATCTAAT 162
Query 199 CTTGTTTCTCGAAAAGAATT-TTACTACC-ACTGGTATTCAGGTAAGAACGAGAACCATC 256
| ||||| | || || || ||||| || | ||||||||||||||||||||||||||||
Sbjct 163 CATGTTTTTAGATTAG-CTTATTACT-CCGATTGGTATTCAGGTAAGAACGAGAACCATC 220
Query 257 CCATGATTCTCATTAAGAAA-GAT-CTTGGCTTGTCGAGTCTCTTCAAAG-TAGATCTTT 313
||||||| ||||| |||||| | | | | |||| | ||| ||| | | |||||||
Sbjct 221 CCATGATACTCATCAAGAAACG-TGC-TCGCTTTTGGAG---CTT-GAGGACAGATCTTA 274
Query 314 TGAGCCGCGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAACCTTTTTGAAATTGG 373
|| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 275 TGTGCCGGGACATAGCAGTTTCATCGATGGTGAGTGGTCACAAAAACTTTTTGAAATTGG 334
Query 374 TTGGATGTTGTCTTGAGTTTGAAGATTCAGTCAAAGTTTATCATGGTGTTAAGAAACATT 433
||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||||
Sbjct 335 TTGGATGTTGTCTTGAGTTGGAAAAGCCAGTCTTGGTTTATCATGGTGTAAAGAAACATT 394
Query 434 A-CAAATTAGA-AATAAGTGAACATCCATGGAAAAGGAGAATGAAGATAGTTGAAGATAT 491
| | ||||| | ||||||||| || | |||||||||||||||||||||| ||||||||
Sbjct 395 ATC-AATTA-ATAATAAGTGAGCAGACGTGGAAAAGGAGAATGAAGATAGCAGAAGATAT 452
Query 492 TGCTACTGCTTTAGCTTACCTTCACACTGCGTTCCCTAGGCTCTTTGTATATAGGATTTT 551
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||
Sbjct 453 CGCTACTGCTTTAGCTTACCTTCACACTGCGTTCCCTAGGCCCTTCGTATATACGAGTTT 512
Query 552 GTCTCATTG-GAATATTTTATTGGATGAAGATGGGGTCGCGAAGCTGACTGATTTTTCTC 610
|||| |||| |||||| ||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 513 GTCT-ATTGAGAATATCTTATTGGATGAAGATGGGGTCGCCAAGCTGATTGATTTCTCTC 571
Query 611 ACTGCGTCTGAATTCCAGAAGGAGACACATTTGTCCAGGTTGAG-GCAGCAGAGGG---A 666
|||||||| ||| ||||||||||| ||||||||||||||||| | || ||| |
Sbjct 572 TCTGCGTCTCAATCCCAGAAGGAGAAACATTTGTCCAGGTTGACAG-AGAAGATATCTTA 630
Query 667 TTCTATAGTTACTTTGCCGATAATTACAT--T-AGCAGTGGCGTAGTCTCAGAGAGAACA 723
|| ||||||||||| | ||||| |||||| | |||||||||||||||||||||| ||||
Sbjct 631 TTATATAGTTACTTGGACGATAGTTACATGATGAGCAGTGGCGTAGTCTCAGAGAAAACA 690
Query 724 GATGTCTTTGGCTTTGGAATGTTTATGGGTATAAGGCTTCTATTAGGAAA 773
|||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 691 GATGTCTTTGCCTTTGGAATGTTTATGGGTCTATCGCTTCTATTAGGAAA 740
Score = 326 bits (176), Expect = 3e-88
Identities = 218/238 (92%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 846 ATGCTCGAAATTTGCTGTCAACATTAAAGGAAGACCGATC-AATGGAAGAGATTGCAGAT 904
||||| || ||| |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 761 ATGCTGGATATTGGCTGTCAAAATTAAAGGAAGACCGA-CGAATGGAAGAGATTGCAGAT 819
Query 905 CCAAAGATGATAGAAAAGATGGGTCAAATTTCCGAAGAAGAGCTTTGTCAAATGAAAGCT 964
| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 820 CGAAAGATGATAGAAAAGATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGCT 879
Query 965 TTCCGAATGTTGTCACTGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAA 1024
||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 880 TTCCGAATGCTCTCACTGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAA 939
Query 1025 GTTGTCAAAGAACTAAAGAAAATCCAAAGATCTCTTTTTAACGACTCTTCTTCT-CTT 1081
|| | ||||||||||||||| || |||| |||||||| |||||||||||||||| |||
Sbjct 940 GTGGCCAAAGAACTAAAGAAGATTCAAACATCTCTTTATAACGACTCTTCTTCTACTT 997
> Ahg917565 jgi|Araly1|917565|Al_scaffold_0008_2316
Length=603
Score = 300 bits (162), Expect = 2e-80
Identities = 203/223 (91%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 862 GTCAACATTAAAGGAAGACCGATC-AATGGAAGAGATTGCAGATCCAAAGATGATAGAAA 920
||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||
Sbjct 345 GTCAAAATTAAAGGAAGACCGA-CGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAA 403
Query 921 AGATGGGTCAAATTTCCGAAGAAGAGCTTTGTCAAATGAAAGCTTTCCGAATGTTGTCAC 980
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||| | ||||
Sbjct 404 AGATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCCGAATGCTCTCAC 463
Query 981 TGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGTCAAAGAACTAA 1040
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 464 TGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTTA 523
Query 1041 AGAAAATCCAAAGATCTCTTTTTAACGACTCTTCTTCTCTTTC 1083
|||| ||||||| ||||||| |||||||||||||||| |||
Sbjct 524 AGAAGATCCAAACATCTCTTCAAAACGACTCTTCTTCTCCTTC 566
Score = 200 bits (108), Expect = 2e-50
Identities = 178/209 (85%), Gaps = 15/209 (7%)
Strand=Plus/Plus
Query 82 AGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATTCGGCCATGGCAAATCCAATCCCA 141
||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 44 AGAGAGGAGCCAAGTTGTTAGAAGATCTGATCGAATTAGGCCATGGCAAATCCAATCCCA 103
Query 142 TCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAATTTCAGCGACTAATCTT 201
|||||||||| |||| ||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 104 TCAAATTCTTGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACT---CTA 160
Query 202 GTTTCTCGAAAAGAATTTTACTACC-ACTGGTATTCAGGTAAGAACGAGAACCATCCCAT 260
| | | | ||| || || | ||||||||||||||||||||||||||||||||
Sbjct 161 AT--C--GT---G--TTTC-CT-CCGATTGGTATTCAGGTAAGAACGAGAACCATCCCAT 209
Query 261 GATTCTCATTAAGAAAGATCTTGGCTTGT 289
||| ||||| ||||||||| |||||||||
Sbjct 210 GATACTCATCAAGAAAGATGTTGGCTTGT 238
> Ahg925502 jgi|Araly1|925502|scaffold_201063.1
Length=946
Score = 285 bits (154), Expect = 6e-76
Identities = 195/214 (91%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 875 GAAGACCGATC-AATGGAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT 933
|||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAAGACGGA-CGAATCCAAGAGATTGCAGATCCAAAGATGATAGAAAAGATGGGTCAAAT 790
Query 934 TTCCGAAGAAGAGCTTTGTCAAATGAAAGCTTTCCGAATGTTGTCACTGAGATGCATGGG 993
||| ||| ||||||||||||||||| |||||||||||||| | |||||||||||||| ||
Sbjct 791 TTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCCGAATGCTCTCACTGAGATGCATCGG 850
Query 994 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGTCAAAGAACTAAAGAAAATCCAAAG 1053
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 851 TCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGCCAAAGAATTAAAGAAGATCCAAAG 910
Query 1054 ATCTCTT--T-T-TAACGACTCTTCTTCTCTTTC 1083
||||||| | | ||||||||||||||||| |||
Sbjct 911 ATCTCTTAATATGTAACGACTCTTCTTCTCCTTC 944
> Ahg338701 jgi|Araly1|338701|fgenesh1_pg.C_scaffold_2000800
Length=462
Score = 196 bits (106), Expect = 3e-49
Identities = 169/199 (85%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 66 TCCGGTAGAGTGGCCAAGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATTCGGCCAT 125
|||| || |||| | ||||||| |||||||||||| |||| || |||||||||||||||
Sbjct 268 TCCGATATAGTGTCTGAGAGAGGAGCCAAGTTGTTAAAAGATCTGATCGAATTCGGCCAT 327
Query 126 GGCAAATCCAATCCCATCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAAT 185
|||| |||||||||||||||||||||||| | ||||||||||| ||| ||||||||| ||
Sbjct 328 GGCATATCCAATCCCATCAAATTCTTCTCAGCTGATGAGATCCTCAAAGCCACCAACTAT 387
Query 186 TTCAGCGACT--AATCTTGTTTCTCGAAAAGAATTTTACTACCACTGGTATTCAGGTAAG 243
|||||||||| |||||||||| || | | || || | |||||||||||||||||
Sbjct 388 TTCAGCGACTCCAATCTTGTTTTTC---TATCACTTCCCTTCAACTGGTATTCAGGTAAG 444
Query 244 AACGAGAACCATCCCATGA 262
||||||||||||||| |||
Sbjct 445 AACGAGAACCATCCC-TGA 462
> Ahg907919 jgi|Araly1|907919|Al_scaffold_0002_1000
Length=471
Score = 148 bits (80), Expect = 8e-35
Identities = 196/249 (79%), Gaps = 20/249 (8%)
Strand=Plus/Plus
Query 90 GCCAAGTTGTTAGAAGAGCTCATCGAAT-TCGGCCATGGCAAATCCAATCCCATCAAATT 148
||||||||||||| ||| || ||||||| | || |||| |||||||||||||||| |||
Sbjct 122 GCCAAGTTGTTAG-AGATCTGATCGAATGT-TGCGATGGAAAATCCAATCCCATCAGATT 179
Query 149 CT-TCT-CTG--G--TGATGAGATCCGCAATGCCACCAACAATTTCAGCGACTAATCTTG 202
|| ||| ||| | ||||||||||||||| | ||||||||||| || | | | |
Sbjct 180 CTCTCTGCTGACGTCTGATGAGATCCGCAAAGACACCAACAATTACA--G-C--A----G 230
Query 203 TTTCTCGAAAAGAATTTT-ACTACCACTGGTATTCAGGTAAGAACGAGAACCATCCCATG 261
|||| || || ||||| || | | |||||||||||||||||||||||||||||||||
Sbjct 231 ATTCTGGATTAG-ATTTTCCCTTCAAATGGTATTCAGGTAAGAACGAGAACCATCCCATG 289
Query 262 ATTCTCATTAAGAAAGATCTTGGCTTGTCGAGTCTCTTCAAAGTAGATCTTTTGAGCCGC 321
|| ||||| | ||||||| || ||| || || | ||| | || | |||||||| ||| |
Sbjct 290 ATACTCATCAGGAAAGATGTTTGCTAGTGGACTGGCTTGAGAGAATATCTTTTGTGCCAC 349
Query 322 GACATAGCA 330
|||||||||
Sbjct 350 GACATAGCA 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5