BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35810.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354764 jgi|Araly1|354764|fgenesh1_pg.C_scaffold_7001937 684 0.0
Ahg946938 jgi|Araly1|946938|scaffold_703167.1 388 3e-107
Ahg333222 jgi|Araly1|333222|fgenesh1_pm.C_scaffold_176000001 388 3e-107
> Ahg354764 jgi|Araly1|354764|fgenesh1_pg.C_scaffold_7001937
Length=1935
Score = 684 bits (370), Expect = 0.0
Identities = 780/974 (80%), Gaps = 43/974 (4%)
Strand=Plus/Plus
Query 88 TCATCTCCAATGCTACTCTTTGATGCTGCACAATCT-GGAAATCTTGAGCTTTTACTTAT 146
||| || ||| |||||||||||||||||| || || |||||| ||||| ||||| ||||
Sbjct 988 TCACCTTCAAAGCTACTCTTTGATGCTGCGGAA-CTGGGAAATGTTGAGTTTTTAGTTAT 1046
Query 147 TCTCATTCGTTCTTATCCAGATCTGATATGGACGGTGGATCATAAGAACCAAAGCTTGTT 206
||| ||||||||||| |||||||| ||||||| || ||| | ||| | ||| || ||
Sbjct 1047 TCTTATTCGTTCTTACCCAGATCTAATATGGAAAGTTGATAACAAGTGTCGAAGTTTATT 1106
Query 207 CCACATTGCTGCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGC 266
|||||||||||| || |||| ||||||| || || || | |||||||||||||||||
Sbjct 1107 TCACATTGCTGCTTTATATCGCCATGAAAGCATATTCAAAATAATCTATGAACTCGGGGG 1166
Query 267 CATCAA--A-GATTTGATAGCTATGTATAAAGAGAAAGAATCCAACGACAACTTGTTGCA 323
|||||| | |||| | | || | |||| | || | |||||||| | |||||| ||||
Sbjct 1167 CATCAAGGATCATTTAACATCT-TATATAGA-AG-ATGAATCCAAAAATAACTTGCTGCA 1223
Query 324 TCTTGTGGCACGTTTACCACCTCCAAATAGGTTACAAGTTGTATCAGGAGCAGCACTTCA 383
| |||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 1224 TTTTGTTGCACGTTTACCACCTCCAAATCGGCTACATGTTGTATCAGGAGCAGCACTTCA 1283
Query 384 GATGCAAAGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACA 442
||||||||||||| | ||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 1284 GATGCAAAGAGAGCTCCTTTGGTTCAAGGCTGTTAAAGAGATAGTTCCTCGT-TCATACA 1342
Query 443 TCAAAACAAAGAACAAAAAAGAG-GAGGTGGCGCATGATCTATTTACGAAAGAGCATGAC 501
|||||||||| |||||| | | | |||| |||||||||||||| || ||||| || ||
Sbjct 1343 TCAAAACAAAAAACAAAGATG-GCCAGGTAGCGCATGATCTATTCACAAAAGAACACGAA 1401
Query 502 AACTTACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGACTGCATGCATTCTTGTA 561
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 1402 AATTTACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGACAGCATGTATGCTCGGG 1461
Query 562 TCAACACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTCTACCTGGTGGAAAC-GA 620
|||| |||||||||||||||||||||||||| ||||||||||||| ||||| | | ||
Sbjct 1462 GCAACGCTGATAGCAACTGTGGTCTTTGCAGCAACCTTTACTCTACCGGGTGGCA-CTGA 1520
Query 621 TACGAGTGGCGACATAAAAACACTAGGCTTCCCT-ACTTTTAGAAAGGAGTTCTGGTTTG 679
|| ||| | || | | ||||||||| | ||| ||| |||||| |||||
Sbjct 1521 CAC---TGG--AT-TA----C-CG-GGCTTCCCTCAATTT-AGAGGGGAGTTATGGTTC- 1566
Query 680 A--AGTGTTTATCATATCAGATTCGGTTGCCCTCCTATCATCTGTGACATCTATTATGAT 737
| | | |||||| |||||||||||| ||| ||| | |||||||||| | ||||| || |
Sbjct 1567 ACCA-TATTTATCTTATCAGATTCGGCTGCGCTCTTCTCATCTGTGATAGCTATTGTGTT 1625
Query 738 ATTTTTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAA 796
||| ||||| ||| |||| ||||| |||||||||| | | || || ||||| ||||| |
Sbjct 1626 ATTCTTGTCGATCTTGACTTCTCGATATGCAGAAGATGACTT-CCGGACGAAGTTACCGA 1684
Query 797 CGAAGCTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTTGCCT 856
| |||||||||||||||||||| ||||||||| | ||||| | | |||||||||||||
Sbjct 1685 CAAAGCTAATGTTGGGACTTTTTGCATTGTTTATCTCAATAAACACTATGGTTCTTGCCT 1744
Query 857 TCACAGCGACATTGATCTTGATCCGT-GA-TCAA-GAACCTAAATGGAGCTTAATCCTCT 913
|||| ||| || |||| |||||||| || || | |||||| ||||| |||||||||
Sbjct 1745 TCACCGCGTCAATGATATTGATCCGCAGAGTCGATGAACCTGTGTGGAGATTAATCCTCA 1804
Query 914 TAGTTTACGTGGCTTCTGC-CACGGCTCTCTCATTTG-TGGTGTTGCATTTTCAGCTTTG 971
| |||| | | ||||| | | | ||| || |||||| | |||||||| || |||||||
Sbjct 1805 TCGTTTGCCTTTCTTCT-CTCGCCGCTATCACATTTGCTT-TGTTGCATGTTAAGCTTTG 1862
Query 972 GTTTGACA-CACTTCGCTCAGCCTATCTGTCTAAGTTCCTCTTTCATGGACGTAAAAGTG 1030
|||| | | ||||||||||||| ||| | || ||||| ||||| | | | |||| ||||
Sbjct 1863 GTTT-ATAACACTTCGCTCAGCATATTTTTCAAAGTTTCTCTTCCGTAAATGTAAGAGTG 1921
Query 1031 GCCTCTACCTCTAA 1044
|||| |||||||
Sbjct 1922 TTCTCTTCCTCTAA 1935
> Ahg946938 jgi|Araly1|946938|scaffold_703167.1
Length=1066
Score = 388 bits (210), Expect = 3e-107
Identities = 715/948 (75%), Gaps = 77/948 (8%)
Strand=Plus/Plus
Query 100 CTACTCTTTGATGCTGCA-CAATCTGGAAATCTTGAGCTT-TTACTTATTCTCATTCGTT 157
|||||||||||||||||| | || ||||||| | ||| || || | ||||| |||||||
Sbjct 120 CTACTCTTTGATGCTGCATC-ATGTGGAAATGTCGAG-TTCCTAGTCATTCTTATTCGTT 177
Query 158 CTTATCCAGATCTGATATGGACGGTGGATCATAAG-AACCAAAGCTTGTTCCACATTGCT 216
| ||||||||| ||||||||| || ||| | ||| |||| ||||||||| |||||||||
Sbjct 178 CGTATCCAGATTTGATATGGAAAGTCGAT-AGAAGAAACCGAAGCTTGTTTCACATTGCT 236
Query 217 GCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGCCATCAAAGAT 276
||||||||||||||||||| ||||| || | || ||||||||||| || ||||| ||
Sbjct 237 GCTATAAATCGTCATGAAAGCATCTTCAACATCATATATGAACTCGGAGCAATCAAGGAC 296
Query 277 TTGATAGCTATGTATAAAGAGAAAGAATCCAACGAC-AA--CT-TGTTGCATCTTGTGGC 332
|| |||||| | | || ||||| ||| ||| | | || || ||||||||||||| ||
Sbjct 297 TTAATAGCT-TCT-TATCGAGAA-GAAGCCA-CAAATAATACTCTGTTGCATCTTGTTGC 352
Query 333 ACGTTTACCACCTCCAA-ATAGGTTACA-AGTTGTATCAGGAGCAGCACTTCAGATGCAA 390
| | || || |||| | || | |||| | |||||||||| || |||||||| ||||||
Sbjct 353 AAGCTTGCCTCCTC-ATGATCGACTACATA-TTGTATCAGGGGCTGCACTTCAAATGCAA 410
Query 391 AGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACATCAAAAC 449
|||||||||||||||| ||||||||| ||| |||| ||||||||| | |||||||||| |
Sbjct 411 AGAGAGATTCTTTGGTTCAAGGCTGTGAAAAAGATTGTTCCTCGT-TCATACATCAAATC 469
Query 450 AAAGAACAAAAAAGAGGAGGTGGCGCATGATC-TATTTACGAAAG-AGCATGAC-AACTT 506
|||||| ||| ||| ||| | ||||| || | | ||||| || | | || | || ||
Sbjct 470 AAAGAATAAAGAAGGGGAATTAGCGCAAGA-CATCTTTACTAATGGA-CACAAAGAA-TT 526
Query 507 ACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGAC-TGCATGCATTCTTGTATCAA 565
||| |||||||||||||||||||||||||| ||||| || | |||| || |||||| |||
Sbjct 527 ACGGAAAGAAGGAGAGAAATGGATGAAAGATACTGCAACAT-CATGTATGCTTGTAGCAA 585
Query 566 CACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTC-TACCTGGTGGAAACGATACG 624
| || |||||||| || || ||||| || |||||||| | |||| || || ||| || |
Sbjct 586 CGCTAATAGCAACGGTAGTTTTTGCCGCGGCCTTTAC-CGTACCAGGAGGGAACAAT--G 642
Query 625 AGTGGCGACATAAAAACACTAGGCTTCCCTA-CTTTTAGAAAGGAGTTCTGGTTTGA-AG 682
| | | || || | ||||| || | | | ||| || |||||| | |
Sbjct 643 AA-G---A-AT-----CAGGA--CTTCC-TATCCTCCAAAAAA-AGAAATGGTTTAATA- 687
Query 683 TGTTTATCATATCAGATTCGGTTGCCCTCCTA-TCATCTGTGA-CATCTATTA-TGATAT 739
| |||||| |||| ||| |||| || || | || || | | ||||||| | |||| |
Sbjct 688 TATTTATCCTATCGGATGCGGTCGCGCTA-TGCTCCTCC-TCAACATCTAT-AGTGAT-T 743
Query 740 TT-TTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAAC 797
|| ||||||||| |||| || | ||||| |||| | | |||| | | | ||||| |
Sbjct 744 TTCTTGTCAATCTTGACGTCAAGATATGCTGAAGATGATTTTCTTGT-GTCATTACCCTC 802
Query 798 GAAG-CTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTT-GCC 855
||| ||||||||||||||||| ||||||||||| || ||||| ||||||| | | ||
Sbjct 803 -AAGGCTAATGTTGGGACTTTTGGCATTGTTTGTCTCCATTATCGCAATGGT-CATAGCT 860
Query 856 TTCACAGCGACATTGAT-CTTGATCCGTGATCA-AGAAC-CTAAATGGAGCTTAATCCT- 911
||| ||||| || || ||||||| ||| | ||| | | |||| ||| |||
Sbjct 861 TTCTGTGCGACGTT-ATTCTTGATCTATGACCGGAGA-CTCGCG-TGGAATTTAG-CCTT 916
Query 912 C-TTAGTTT-ACGTGGCTTCTGCCACGGCTCTCTCATTTGTGGTGTTGCATTTTCAGCTT 969
| ||| ||| || || |||| ||| ||| | || |||| || | ||| | ||||||
Sbjct 917 CATTA-TTTCACTTG-CTTCAATCACAGCTTTTTCGTTTGCCTTGCTACATGTGCAGCTT 974
Query 970 TGGTTTGACACACTTCGCTCAGCCTATCTG-TCTAAGTTCCTCTTTCA 1016
||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct 975 TGGTTTGACACACTTCGATCAGCCTAT-TGGTCCAAGTTCCTCTTTCA 1021
> Ahg333222 jgi|Araly1|333222|fgenesh1_pm.C_scaffold_176000001
Length=1026
Score = 388 bits (210), Expect = 3e-107
Identities = 715/948 (75%), Gaps = 77/948 (8%)
Strand=Plus/Plus
Query 100 CTACTCTTTGATGCTGCA-CAATCTGGAAATCTTGAGCTT-TTACTTATTCTCATTCGTT 157
|||||||||||||||||| | || ||||||| | ||| || || | ||||| |||||||
Sbjct 100 CTACTCTTTGATGCTGCATC-ATGTGGAAATGTCGAG-TTCCTAGTCATTCTTATTCGTT 157
Query 158 CTTATCCAGATCTGATATGGACGGTGGATCATAAG-AACCAAAGCTTGTTCCACATTGCT 216
| ||||||||| ||||||||| || ||| | ||| |||| ||||||||| |||||||||
Sbjct 158 CGTATCCAGATTTGATATGGAAAGTCGAT-AGAAGAAACCGAAGCTTGTTTCACATTGCT 216
Query 217 GCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGCCATCAAAGAT 276
||||||||||||||||||| ||||| || | || ||||||||||| || ||||| ||
Sbjct 217 GCTATAAATCGTCATGAAAGCATCTTCAACATCATATATGAACTCGGAGCAATCAAGGAC 276
Query 277 TTGATAGCTATGTATAAAGAGAAAGAATCCAACGAC-AA--CT-TGTTGCATCTTGTGGC 332
|| |||||| | | || ||||| ||| ||| | | || || ||||||||||||| ||
Sbjct 277 TTAATAGCT-TCT-TATCGAGAA-GAAGCCA-CAAATAATACTCTGTTGCATCTTGTTGC 332
Query 333 ACGTTTACCACCTCCAA-ATAGGTTACA-AGTTGTATCAGGAGCAGCACTTCAGATGCAA 390
| | || || |||| | || | |||| | |||||||||| || |||||||| ||||||
Sbjct 333 AAGCTTGCCTCCTC-ATGATCGACTACATA-TTGTATCAGGGGCTGCACTTCAAATGCAA 390
Query 391 AGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACATCAAAAC 449
|||||||||||||||| ||||||||| ||| |||| ||||||||| | |||||||||| |
Sbjct 391 AGAGAGATTCTTTGGTTCAAGGCTGTGAAAAAGATTGTTCCTCGT-TCATACATCAAATC 449
Query 450 AAAGAACAAAAAAGAGGAGGTGGCGCATGATC-TATTTACGAAAG-AGCATGAC-AACTT 506
|||||| ||| ||| ||| | ||||| || | | ||||| || | | || | || ||
Sbjct 450 AAAGAATAAAGAAGGGGAATTAGCGCAAGA-CATCTTTACTAATGGA-CACAAAGAA-TT 506
Query 507 ACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGAC-TGCATGCATTCTTGTATCAA 565
||| |||||||||||||||||||||||||| ||||| || | |||| || |||||| |||
Sbjct 507 ACGGAAAGAAGGAGAGAAATGGATGAAAGATACTGCAACAT-CATGTATGCTTGTAGCAA 565
Query 566 CACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTC-TACCTGGTGGAAACGATACG 624
| || |||||||| || || ||||| || |||||||| | |||| || || ||| || |
Sbjct 566 CGCTAATAGCAACGGTAGTTTTTGCCGCGGCCTTTAC-CGTACCAGGAGGGAACAAT--G 622
Query 625 AGTGGCGACATAAAAACACTAGGCTTCCCTA-CTTTTAGAAAGGAGTTCTGGTTTGA-AG 682
| | | || || | ||||| || | | | ||| || |||||| | |
Sbjct 623 AA-G---A-AT-----CAGGA--CTTCC-TATCCTCCAAAAAA-AGAAATGGTTTAATA- 667
Query 683 TGTTTATCATATCAGATTCGGTTGCCCTCCTA-TCATCTGTGA-CATCTATTA-TGATAT 739
| |||||| |||| ||| |||| || || | || || | | ||||||| | |||| |
Sbjct 668 TATTTATCCTATCGGATGCGGTCGCGCTA-TGCTCCTCC-TCAACATCTAT-AGTGAT-T 723
Query 740 TT-TTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAAC 797
|| ||||||||| |||| || | ||||| |||| | | |||| | | | ||||| |
Sbjct 724 TTCTTGTCAATCTTGACGTCAAGATATGCTGAAGATGATTTTCTTGT-GTCATTACCCTC 782
Query 798 GAAG-CTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTT-GCC 855
||| ||||||||||||||||| ||||||||||| || ||||| ||||||| | | ||
Sbjct 783 -AAGGCTAATGTTGGGACTTTTGGCATTGTTTGTCTCCATTATCGCAATGGT-CATAGCT 840
Query 856 TTCACAGCGACATTGAT-CTTGATCCGTGATCA-AGAAC-CTAAATGGAGCTTAATCCT- 911
||| ||||| || || ||||||| ||| | ||| | | |||| ||| |||
Sbjct 841 TTCTGTGCGACGTT-ATTCTTGATCTATGACCGGAGA-CTCGCG-TGGAATTTAG-CCTT 896
Query 912 C-TTAGTTT-ACGTGGCTTCTGCCACGGCTCTCTCATTTGTGGTGTTGCATTTTCAGCTT 969
| ||| ||| || || |||| ||| ||| | || |||| || | ||| | ||||||
Sbjct 897 CATTA-TTTCACTTG-CTTCAATCACAGCTTTTTCGTTTGCCTTGCTACATGTGCAGCTT 954
Query 970 TGGTTTGACACACTTCGCTCAGCCTATCTG-TCTAAGTTCCTCTTTCA 1016
||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct 955 TGGTTTGACACACTTCGATCAGCCTAT-TGGTCCAAGTTCCTCTTTCA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5