BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35870.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493638 jgi|Araly1|493638|fgenesh2_kg.7__3071__AT5G35870.1 845 0.0
> Ahg493638 jgi|Araly1|493638|fgenesh2_kg.7__3071__AT5G35870.1
Length=588
Score = 845 bits (457), Expect = 0.0
Identities = 549/593 (93%), Gaps = 7/593 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGAAATCTTATTTCTTCTATCTTTTTTGGTGGAACTACAAAGTAATTGCTTTCAT 60
||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGTTGAACTCTTGTTTCTACTATCCTTTTTAGTGGAACTACAAAGTAATTGCTTTCAT 60
Query 61 ATGAATCTTGAGAGCATAAAAATGAACGAAGGGGTCATGAGTTTTATTTTATTGCGTTTT 120
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||
Sbjct 61 ATGAATCTTGAGAGCATAAAAATGAAAGAAGGGGTCATGAGTTTTATTTCATTACTTTTT 120
Query 121 AAGAGACCAGTGTCATGGTTGTCTTTTCTTGCCCCACCACTTCTTCACATCATAGGACTT 180
||||||||||| |||||||| ||||||||||||| ||| ||||||||||| ||||||||
Sbjct 121 AAGAGACCAGTTTCATGGTTATCTTTTCTTGCCCTACCTCTTCTTCACATTGTAGGACTT 180
Query 181 GGGTTCTCGCAAATCATCCTAACCTCAGCTGCATTGTTCTTCTCATCTTTCTTCTTCCCT 240
|||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 181 GGGTTCTCACAAATCTTCCTAACCTCAGCTGCTTTGTTCTTCTCCTCTTTCTTCTTCCCT 240
Query 241 CTCTCAATCCAAAAACCAAACTCCAAGGTTCAAGATCTTAGTCAACAAGACTACTT-AGG 299
||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||
Sbjct 241 CTCTCAATCCAAAAACCAAACTCCAAGGTTCAAGATCATAGCCAACAAGACT-CTTTAGG 299
Query 300 AGAGACTGAACTATCATCTACGACCACTAATGATATTGTCAAAAATAATGACGAAGATGA 359
| | | |||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 300 ACAAAGTGAAGTA-C--CTACGACCACTGATGATATTGTCAAAAATAATGACGAAGACGA 356
Query 360 CGGGACAATCCCTGATGAGGAAAGTCTCATAGAGCTCTCCTTACCAAGCGGCCATTACAT 419
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 357 CGGGACAATCCCTGATGAGGAAAGTCTCATAGAGCTCTCCTTACCAAGTGGTCACTACAT 416
Query 420 TGGCCACCACTATAGTACTATGATTGGTAAACAA-GATCAAAAGATCATGTACAACAACA 478
|||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 417 TGGCCACCACTACAGTACTATGATTGGTAAA-AATGATCAAAGGATCATGTACAACAACA 475
Query 479 TCCCAGATTTCAGGCTTATCCAATTATCAGCCGAGTATGAAGACGATAATCTCATCGAAA 538
| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 476 TACCAGATTTCAGGCTTATTCAACTATCAGCCGAGTATGAAGACGATAATCTGATCGAAA 535
Query 539 TCGACATTTCCATCGGATCGATCAAGTGTTCAAGGTTCCAGATCAAAGCCTGA 591
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 536 TCGACATTTCCATCGGATCCATCAAGTGTTCAAGGTTCCAGATCAAAGCCTGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5