BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35910.1
Length=2886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355577 jgi|Araly1|355577|fgenesh1_pg.C_scaffold_7002750 3849 0.0
Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299 1029 0.0
> Ahg355577 jgi|Araly1|355577|fgenesh1_pg.C_scaffold_7002750
Length=2604
Score = 3849 bits (2084), Expect = 0.0
Identities = 2447/2620 (93%), Gaps = 33/2620 (1%)
Strand=Plus/Plus
Query 89 ATGAGCGACGGTAACATGGACGTCGACGAATCACCAGTCTCTTGGAAGGTAAAGTCTCTG 148
||||| || |||| ||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 1 ATGAGAGATGGTACCATGGACGTCGACGAATCACCGGTTTCGTGGAAGGTAAAGTCCCTG 60
Query 149 GAGAA-ATTAATCGATGGTTCTTCTTTCTCTTCGACTCTCTCGAGACTCTCATCGTCTTC 207
|| || |||| ||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 61 GA-AACATTAGTCGATGG---TTCTTTCTCTTCGACACTCTCGAAACTCTCATCGTCTTC 116
Query 208 TCGCCTAATTCCAACGAGTAGAGATTTTCACTTTTACTACAATTTCGATGAGTTCAAACG 267
||| || ||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 117 TCGTCTGATTCCGTCGAGTAGAGATTTTCATTTTTACTACAATTTCGATGAGTTTAAACG 176
Query 268 CCCAATCGATGAGATAACTGGAACCTCGCAATCAACTCTTGCA-ACGATCGGTGATTCCG 326
|||||||||||| ||| |||||| |||||||||| ||| | | ||||||||||||||||
Sbjct 177 CCCAATCGATGATATAGCTGGAAGCTCGCAATCAGTTCTCG-AGACGATCGGTGATTCCG 235
Query 327 AGCAAGTTTGGGGGAAATCGATGAAGTTTCCTGGCGATGTTGATGACGTAT-ATGCGGAG 385
|||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||
Sbjct 236 AGCAAGTTTGGGGGAAATCGATGAAGTTTCCTGGCGATGTTGATGAAGT-TGATGCTGAG 294
Query 386 GATTGG-TTATGTAACGTGAATGATGAATTGATTGAGAGATTTGATGTTTCTGTTGATGA 444
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 295 GATTGGCTT-TGTAACGTGAATGATGAATTTATCGAGAGATTTGATGTTTCTGTTGATGA 353
Query 445 GTTTCAGAGGATTAGGAAGAAAG-AGAAGGAAATTGGTAGGTCTGTTGTTGCTGATGATG 503
|||||||||||| ||||||||| |||| ||||||||| || ||| || | | || |||
Sbjct 354 GTTTCAGAGGATCCGGAAGAAAGAAGAA-GAAATTGGTCGGCCTG-TG--GATTATAATG 409
Query 504 GAGATGATGGGTTTCAGATGGTTTATGGGAAGAAGAAGAAGCCTGTTGGTAATGTGGTTA 563
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 410 GGGATGATGGGTTTCAGATGGTTTATGGGAAGAAGAAAAAGCCTGTCGGTAATGTGATTA 469
Query 564 CTGGCTCGGCAGCGGTTAATGGTGGTGGTTCTGTGATTGATGTTAAGATGGCTGAGAGGG 623
|||||| | |||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 470 CTGGCT-TG--GCGGCTAA---TGGTGGTTCGGTGATTGATGTTAAGATGGCTGAGAGGG 523
Query 624 ATAAGAATTCATCTGGTAAGGCTAAAGTTCCTTTTCATGTACCAACTATAAAGAAGCCTC 683
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 524 ATAAGAATTCATCTGGTAAGGCCAAAGTTCCTTTCCATGTACCAACCATAAAGAAGCCTC 583
Query 684 AAGAGGAGTATAACATATTGGTGAACAATGCGAATCTACCGTTTGAGCATGTTTGGTTGG 743
||||||||||||||||| |||||||||| || |||| |||||||||||||||||||||||
Sbjct 584 AAGAGGAGTATAACATACTGGTGAACAACGCTAATCAACCGTTTGAGCATGTTTGGTTGG 643
Query 744 AGAGGAGCGAGGATGATCTGCGGGCT-ATGCATCCTTTGGAGAAATTTTCAGTGCTTGAC 802
||||||||||||| |||| ||||| | |||||||| |||||||| ||||||||||||||
Sbjct 644 AGAGGAGCGAGGACGATCAGCGGG-TCATGCATCCACTGGAGAAACTTTCAGTGCTTGAC 702
Query 803 TTCGTTGACAAAGATGTAAACGAGATGGAACCTGTGAAGCCCCTTCCACTGGAACAGACT 862
||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||| |||||
Sbjct 703 TTCGTTGACAAAGATTTAAACGAGATGGAACCTGTTAAGCCCCAACCACTTGAAGAGACT 762
Query 863 CCATTCAAGTTCGTCCAGGAAGTGAAAGATCTGAAAGAATTAGTTGCCAAACTGCGTAGT 922
||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 763 CCATTCAAGTTTGTTCAGGAAGTGAAAGATCTAAAAGAATTAGTTGCTAAACTGCGTGGT 822
Query 923 GTTGAAGAGTTTGCGGTTGATCTGGAGCATAATCAGTATAGATCTTTTCAAGGATTGACA 982
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 823 GTTGAAGAGTTTGCGGTTGATCTGGAGCATAATCAGTATCGATCTTTTCAAGGATTGACA 882
Query 983 TGCTTGATGCAAATTTCCACCAGAACAGAGGATTATATAGTTGATACATTTAAGCTTCGT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGCTTGATGCAAATTTCCACCAGAACAGAGGATTATATAGTTGATACATTTAAGCTTCGT 942
Query 1043 ATTCACATTGGGCCTTATCTAAGGGAGATATTCAAAGACCCTAAAAAGAAAAAGGTAATG 1102
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 943 ATTCACATTGGTCCTTATCTAAGGGAGATATTCAAAGACCCTAAAAAGAAAAAGATAATG 1002
Query 1103 CATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAAT 1162
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1003 CATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTTGGCATATATGTCTGCAAT 1062
Query 1163 CTCTTTGACACAGGACAGGCCTCCAGGGTTCTAAATTTGGAGAGAAATAGCCTGGAGTTT 1222
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1063 CTCTTTGACACAGGACAGGCCTCTAGGGTGCTAAATTTGGAGAGAAATAGCCTGGAGTTT 1122
Query 1223 CTTTTGCAGCATTTTTGTGGAGTGACTGCAAATAAAGAGTACCAAAATGCAGACTGGAGA 1282
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1123 CTTTTGCAGCATTTTTGCGGAGTTACTGCAAATAAAGAATACCAAAATGCAGACTGGAGA 1182
Query 1283 ATAAGACCCCTTCCAGAGGAAATGACAAGATATGCAAGAGAAGATACCCACTACCTCTTA 1342
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1183 ATTCGACCCCTTCCAGAGGAAATGACAAGATATGCAAGAGAAGATACCCACTATCTTTTA 1242
Query 1343 TACATATATGATTTAATCAAACTAGAAC-TGCAGA-GAATGGCAAAGGATGACGCGCATA 1400
|||||||||||| |||| | |||||||| || | | |||||||||||||||||| |||||
Sbjct 1243 TACATATATGATGTAATGAGACTAGAACTTG-A-ACGAATGGCAAAGGATGACGAGCATA 1300
Query 1401 CTGACTCTCCTCTACTTGAGGTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATG 1460
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTGACTCTCCTCTGCTTGAGGTCTACAAGCGGAGTTACGATGTGTGCACACAACTATATG 1360
Query 1461 AGAAAGAGTTATTGACCGAGAATTCATATCTTCACGTATATGGGCTTCAAGCAGCGGGCT 1520
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1361 AGAAAGAGCTATTGACCGAGATTTCATATCTTCACGTATATGGGCTTCAAGCAGCGGGCT 1420
Query 1521 TTAATGCAGCTCAACTTGCCATTGTTGCGGGGCTTTGTGAATGGAGGGATTTCATTGCAC 1580
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1421 TTAATGCAGCTCAACTTGCCATTGTTGCGGGGCTTTGCGAATGGAGGGATTTCATTGCAC 1480
Query 1581 GTGCGGAGGATGAGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCA 1640
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTGCAGAGGATGAGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCA 1540
Query 1641 AGGAGATGCCTGATAGTGTTGGAAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATA 1700
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1541 AGGAGATGCCTGTTAGTGTTGGCAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATA 1600
Query 1701 TCGAGCGTAATGTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAACATTATGCAG 1760
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1601 TCGAGCGTAATGTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAAAATTCTGCAG 1660
Query 1761 CATTTGAGTCTGCTGCTCTATCTTTAAAAGATGTGTCTCCTGGAAATGTAATGGATAAGA 1820
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1661 CATTTGAGTCTGCCGCTTTATCTTTAAAAGATGTGTCTCCTGGAACTGTAATGGATAAGA 1720
Query 1821 ATATTGAACCTATAAGTGAGAAGAAAGACCTGCACACAGGAGATGTGGCTTCTCCAAGTC 1880
||||||||| ||| |||||||||||||| ||||| ||| |||||| ||||||||||||
Sbjct 1721 ATATTGAACATATTAGTGAGAAGAAAGATATGCACGCAGTAGATGTAGCTTCTCCAAGTT 1780
Query 1881 TGAAGGAAAATTCTTCGCAGCTTGAGAGTACCAGGGACCTAATTATGGGTGCAGCAAATA 1940
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1781 TGAAGGAAAATTCTTCGCAGCTTGAGAGTACCAGGGACCTAAATATGGATGCAGCAAATA 1840
Query 1941 CTAATGAAGGGAGAGGTTTAGG-ATCCGGCTTGTTTGGTTCTGCTAAGGTTTCTGCGGCT 1999
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1841 CTAATGAAGGGAGAGGTTTAGGCA-CTGGCTTGTTTGGTTCTGCTAAGGTTTCTGCGGCT 1899
Query 2000 GTTCGGATCTCTAAGAAACCAAGCAGTGGTTTAGGAGCTTTGCTGGGAAATGCAGCCTCC 2059
||| |||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 1900 GTTAGGATTTCTAAGAAACCGAGCAGTGGTTTAGGAGCATTGCTGGGAAGTGCAGCCTCG 1959
Query 2060 AAGAAGAAATCTCGAACTGATGAGAAGGTGAAGGAAGATGTGAAGCTCGAACAGATAAGA 2119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 AAGAAGAAATCTCGAACTGATGAGAAGGTGAAGGAAGATGTGAAGCTCGAACAGATAAGA 2019
Query 2120 TCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACT 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 TCATCTGTAAACCTGTCATTCCATTCGTTTACAGAGAAAGTTCCTGACTCAAAGTCAACT 2079
Query 2180 TCTGAAACATCTCCGAAAGTTTATGGGAAGCCTGAAGAGATGTCCAGTACTATGCCAGCC 2239
||| |||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2080 ACTGGAACAACTCCGAAGGTTTATGGGAAGCCTGAAGAGATGTCCACTACTATGCAAGCC 2139
Query 2240 TCTGTTTCCAAGGAAGATGGTGTGAAAGAGTTGAAAGATGATTCAGAAGAAGCCTCAGAG 2299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2140 TCTGTTTCCAAGGAAGATGGTGTGACAGAGTTGAAAGATGATTCAGAAGAAGCCTCAGAG 2199
Query 2300 ATCGTTGGTACTTCTGGTAGAGTTTCAGAGTCCAAAGTGTCTAGCTCCGAGATGGGCGAT 2359
|| ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||
Sbjct 2200 ATTGTTGGTACTTCTGGTAGAGTTTCAGAGTCCAAAGTATCTGGATCCGAGACAGGCGAT 2259
Query 2360 ATTATACTACTAGAAAATGGTGATGAGAAAAAAGTTGACGCTGAAGATGAACCAATGTCT 2419
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2260 ATTATACTATTAGAAAATGGTGATGAGAAAGAAGTTGAGGCTGAAGATGAACCAATGTCT 2319
Query 2420 CTCTCGGAGTTGTCCACAAACTTTCAGAAGTGCTTTAAATCCATGAATAAGAGCAAGAAG 2479
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 2320 CTCTCTGAGTTGTCCACAAACTTTCAGAAGTGCTTTAAGTCCATGAAAAAGAGCAACAAG 2379
Query 2480 GCCCAAAAGCAGACCGAGTTTTTAAACATAGAGCCTTTTGATTATGAAGCTGCAAGGAAA 2539
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2380 GCCCAAAAGCAGACCGATTTTTTAAACATAGAGCCGTTTGATTATGAAGCTGCAAGGAAA 2439
Query 2540 GAGGTGAAATTTGGGGAAGGACACAAGGGAAGACAAGGAAAGAGAGAAGCTGCAGCAGGT 2599
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2440 GAGGTGAAATTTGGGGAAGGACACAAGGGAAGACAAGGAAAGAAAGAAGTTGCAGCAGGT 2499
Query 2600 CAGAAGAAG--GGG-TCTACACAGGAGCAGTCAGAGTTTGGTCAAGGAAAACGGCGTCAA 2656
||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2500 CAGAAGAAGAAGGGGTCTGGACCGGAGCAGTCAGAGTTTGGTCAAGGAAAACGGCGTCAA 2559
Query 2657 GCTTTTCCGGCATCCGGGAACCGAAGTATGTCCTTTAAAA 2696
|||||||||||||| |||||||||||| | |||||||||
Sbjct 2560 GCTTTTCCGGCATCTGGGAACCGAAGTGCGACCTTTAAAA 2599
> Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299
Length=2046
Score = 1029 bits (557), Expect = 0.0
Identities = 1045/1275 (82%), Gaps = 56/1275 (4%)
Strand=Plus/Plus
Query 599 ATTGATGT-TAAGATGGCTGAGAGGGATAAGA-A-TT---CATC-TGGTAAGGCTAAA-G 650
|||||||| ||| | |||||||| ||||||| | || | | ||| ||||| ||| |
Sbjct 349 ATTGATGTGAAAG-TAGCTGAGAGTGATAAGAGATTTGAGAAACATGGCAAGGC-AAAGG 406
Query 651 TTCCTTTTCATGTACCAACTATAAAGAAGCCTCAAGAGGAGTATAACATATTGGT-GAAC 709
||| |||||| | ||||| |||| ||||||||||||||||||||| || ||||| |||
Sbjct 407 CTCCGTTTCATTTGCCAACGATAACGAAGCCTCAAGAGGAGTATAAGATTTTGGTGGAA- 465
Query 710 AATGCGAATCTACCGTTTGAGCATGTTTGGTTGGAGAGGAGCGAGGATGATCTGCGGGCT 769
||||| ||| ||| ||||| ||||||| |||||||| ||| ||||| | ||| || |
Sbjct 466 AATGCAAATAAACCCTTTGACCATGTTTTGTTGGAGAAGAGTGAGGACGGTCTTCGCTTT 525
Query 770 ATGCATCCTTTGGAGAAATTTTCAGTGCTTGACTTCGTTGACAA-AGATGTAAAC-GAGA 827
|| ||||| ||||||||| |||| ||| | ||||| || || || | || | ||| ||||
Sbjct 526 ATTCATCCATTGGAGAAACTTTCGGTGATGGACTTTGTCGATAACA-ATCT-AACTGAGA 583
Query 828 TGGA-ACCTGTGAAGCCCCTTCCACTGGAACAGACTCCATTCAAG-TTCGTCCAGGAAGT 885
| | ||||| ||||| || ||| ||||| |||||||||||||| || || | |||||
Sbjct 584 T-TATTCCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTT-GTTGAAGAAGT 641
Query 886 GAAAGATCT-GAAAGAATTAGTTGCCAAACTGCGTAGTGTTGAAGAGTTTGCGGTTGATC 944
|||||||| | | || |||| ||| | | ||| ||||||||||||||||| |||||||
Sbjct 642 CAAAGATCTCG-AGGACTTAGCTGCGACATTGCAAAGTGTTGAAGAGTTTGCTGTTGATC 700
Query 945 TGGAGCATAATCAGTATAGATCTTTTCAAGGATTGACATGCTTGATGCAAATTTCCACCA 1004
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 701 TGGAGCATAATCAGTATAGATCTTTTCAAGGATTAACATGCTTGATGCAAATCTCCACCA 760
Query 1005 GAACAGAGGATTATATAGTTGATACATTTAAGC-TTCGTATTCACATTGGGCCTTATCTA 1063
|||| ||||||||||| ||||||||||| |||| || | | ||||||||| ||| |||||
Sbjct 761 GAACCGAGGATTATATTGTTGATACATTCAAGCTTTGGGA-TCACATTGGTCCTCATCTA 819
Query 1064 AGGGAGA-TATTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATCGA-GATA 1121
||||| | | ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 820 AGGGA-ACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATC-ATGATA 877
Query 1122 TTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGG 1181
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 878 TTATTTGGCTTCAACGGGACTTCGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGG 937
Query 1182 CCTCCAGGGTTCTAAATTTGGAGAGAAATAGCCTGGAGTTTCTTTTGCAGCATTTTTGTG 1241
|||| ||||| ||||| |||||||||| || ||||| ||||||||| |||||| |||||
Sbjct 938 CCTCAAGGGTGCTAAAGCTGGAGAGAAAGAGTCTGGAATTTCTTTTGAAGCATTATTGTG 997
Query 1242 GAGT-GACTGCAAATAAAGAGTACCAAAATGCAGACTGGAGAATAAGACCCCTTCCAGAG 1300
|||| | ||||| | ||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 998 GAGTTG-CTGCAGACAAACAATACCAAAATGCAGACTGGAGAATACGACCCCTTCCAGAT 1056
Query 1301 GAAATGACAAGATATGCAAGAGAAGATACCCACTACCTCTTATACATATATGATTTAAT- 1359
| ||||||||||||||| ||||||||||| || || || || ||||| |||||| ||||
Sbjct 1057 GTAATGACAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTAATG 1116
Query 1360 CAAACTAGAACTGCAGAGAATGGCAAAGGATGACGCGCA-TACTGACTCTCCTCTACTTG 1418
| || |||| |||| | |||||||||||| || | ||| | ||||||||||||| | |
Sbjct 1117 CGAA-TAGATTTGCACACAATGGCAAAGGAAGATGAGCAAT-CTGACTCTCCTCTGGTAG 1174
Query 1419 AGGTC-TACAAGCGG-AGTTACGATGTGTGCACACAACTATATGAGAAAGAG-TTATTGA 1475
||| | |||||| || ||||| || ||||||| |||||||||||||||||| || ||||
Sbjct 1175 AGG-CATACAAG-GGCAGTTATGACGTGTGCATGCAACTATATGAGAAAGAGCTT-TTGA 1231
Query 1476 CCGAGAATTCATATCTTCACG-TATATGGGCTTCAAG-CAGCGGGCTTT-AATGCAGCTC 1532
| | | |||||||||||||| | |||||| || | | ||| | | | ||||| | ||
Sbjct 1232 CTGGGGATTCATATCTTCACACT-TATGGGGTT-AGGTCAG-GTAATCTCAATGCGGTTC 1288
Query 1533 AACTTGCCATTGTTGCGGGGCTTTGTGAATGGAGGGATTTCATTGCACGTGCGGAGGATG 1592
||||| ||||||||||||| |||||||||||| ||||| ||||||||||| || ||||
Sbjct 1289 AACTTTCCATTGTTGCGGGTCTTTGTGAATGGCGGGATCGGATTGCACGTGCAGACGATG 1348
Query 1593 AGAGCACTGGTTATGTATTGCCAAACAAAGTTCTCCTTGAAATAGCCAAGGAGATGCCTG 1652
||||||| ||||||||||| ||||| ||| ||| |||| ||||||||||| |||||
Sbjct 1349 AGAGCACCGGTTATGTATTACCAAATAAAACTCTTTTTGACATAGCCAAGGACATGCCA- 1407
Query 1653 AT-AGTGTTGGAAAATTGCGTCGGATGTTGAAGTCAAAGCATCCTTATATCGAGCGTAAT 1711
|| | | || | ||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 1408 ATTACTACTGCTCAGTTGCGCCGGTTGTTGAAGTCAAAGCATCCTTACATCGAGCGTAAT 1467
Query 1712 GTTGATTCGGTGGTCAGTGTCATCAGGCAATCAATGCAACATT-ATGCAGCATTTGAGTC 1770
|||| | ||| ||||||||||||| | |||||||||| || | || ||||| ||| |
Sbjct 1468 TTTGACGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCA-GCGGCATTCGAGCC 1526
Query 1771 TGCTGCTCTATCTTTAAAAGATGTGTC-TCCTGGAA-ATGTAATGGATAAGAATATTGAA 1828
| || || ||||||||||||| || | ||||| || | || | || |||||||| |||
Sbjct 1527 AGTTGTTCAATCTTTAAAAGAT-TGGCGTCCTGAAACA-GTGGTTGAAAAGAATATCGAA 1584
Query 1829 CCTATA-AGTGAGAA 1842
|||| | | ||||||
Sbjct 1585 CCTA-AGATTGAGAA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108938100700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5