BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35915.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924296 jgi|Araly1|924296|scaffold_105577.1 708 0.0
Ahg496320 jgi|Araly1|496320|fgenesh2_kg.8__2136__AT5G27260.1 638 0.0
> Ahg924296 jgi|Araly1|924296|scaffold_105577.1
Length=587
Score = 708 bits (383), Expect = 0.0
Identities = 435/460 (95%), Gaps = 4/460 (1%)
Strand=Plus/Plus
Query 461 GTACGGATGCACTTACGTACAAAGCT-GGAGAGAATCCAAGAAAAGAATATGTGGA-TGA 518
|||||||||||| ||||||||||||| ||| ||||| ||||| |||||||||| || |||
Sbjct 109 GTACGGATGCACGTACGTACAAAGCTGGGA-AGAATTCAAGAGAAGAATATGT-GAGTGA 166
Query 519 TTTTGACAACGTGTATGAGTATGATACTACAACTCATCATGAGTCATCGGAGCATTACAC 578
||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 167 TTTTGACAACGGGTATGAGTATGATACAACAACTCATCATGAGTCATCAGAGCATTACGC 226
Query 579 ACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAAGCTTCCCCCACGTAAAAG 638
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 227 ACCATTCATGTCTCATGGAACTTCAGAAAGTCCAACGGAGAAGCTTCCCCCACGTAAAAG 286
Query 639 AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTGTTAGCAG 698
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 AACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTCTTAGCAG 346
Query 699 TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACAGAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 347 TAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAAAGAAGTGGCACAAAA 406
Query 759 AAAGAATAACGTTTGGGATGCTATAAAAGAAATTTCTGACTTGGATGAATGTATTCGTTA 818
||| |||||||||||||||||| |||||||||||||||| |||||| || |||||||||
Sbjct 407 AAAAAATAACGTTTGGGATGCTCTAAAAGAAATTTCTGATTTGGATAAACGTATTCGTTT 466
Query 819 CAAGGCACTTACCAAAATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT 878
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CAAGGCACTTACCAAGATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGT 526
Query 879 GGAAGAGAGGCTAGGATGAATTCAAACCATTATGGAATAA 918
|||||||||||||||||| |||||||||| ||||||||||
Sbjct 527 GGAAGAGAGGCTAGGATGGATTCAAACCAGTATGGAATAA 566
> Ahg496320 jgi|Araly1|496320|fgenesh2_kg.8__2136__AT5G27260.1
Length=879
Score = 638 bits (345), Expect = 0.0
Identities = 418/453 (92%), Gaps = 5/453 (1%)
Strand=Plus/Plus
Query 20 aaaaaagaaaaaaGGGGGATTATAATCCGTGGTCTCCAGAGGAGACTAAGCTGTTGGTGC 79
||| || |||||||||| || | |||| |||||||||||||||||||||||||||||| |
Sbjct 18 AAAGAA-AAAAAAGGGGAATAACAATCTGTGGTCTCCAGAGGAGACTAAGCTGTTGGTAC 76
Query 80 AACTTCTTGTGGAAGGGATCAACAATAATTGGCGTGATTCTAATGGCACAATCAGTAAAT 139
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 77 AACTTCTTGTGGAAGGGATCAATAATAATTGGCGTGATTCTAATGGTACAATGAGTAAAT 136
Query 140 TAACTGTGGAAACGAAG-TTTATGCCGGAGATCAACAAAGAGTTTTGTCGTTCAAAAAAC 198
|||| ||||| |||||| ||| | || || ||||||||||||||| ||||||||||||||
Sbjct 137 TAACCGTGGAGACGAAGATTT-TACCAGAAATCAACAAAGAGTTTCGTCGTTCAAAAAAC 195
Query 199 TACAATCACTACTTAAGCAGAATGAAGTATTTAAAAATACAATACCAAAGTTGTCTTGAT 258
|||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 196 TACAATCACTACCAAAGCAGAATGAAGTATTTAAAATTACAATACCAAAGTTCTCTTGAT 255
Query 259 CTTCAGCGTTTCAGTTCTGGTTTTGGTTGGGATCCTTTAACAAAAAGATTTACGGCTTCT 318
||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 256 CTTAAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTCGACAAAAAGATTTACCGCTCCT 315
Query 319 GATGAAGTTT-GGAGCGACTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGA 377
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GATGAAGTTTGGGA-CGATTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGA 374
Query 378 TACATTTGAAtttttttACGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGAAA 437
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 375 TACATTTGAATTTTTTGAAGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGGAA 434
Query 438 AAATGCAATTGGATTATGTGATAGTACGGATGC 470
||||||||||||||| |||||||||||||||||
Sbjct 435 AAATGCAATTGGATTGTGTGATAGTACGGATGC 467
Score = 281 bits (152), Expect = 5e-75
Identities = 179/192 (93%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 728 AAGAGAGGCAACAAAAAGAAGTGGCACAGAAAAAGAA-TAACGTTTGGGATGCTATAAAA 786
||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 688 AAGAGAGACAACAAAAAGAAGTGGCACAAAAAAAAAATTAACGTTTGGGATGCTCTAAAA 747
Query 787 GAAATTTCTGACTTGGATGAATGTATTCGTTACAAGGCACTTACCAAAATTTATCATTTG 846
||| |||| || ||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct 748 GAAGTTTCAGATTTGGATGAACGTATTCGTTTCAAGGCACTTACCAAGATTTATCATTTG 807
Query 847 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGAATTCAAACC 906
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 808 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 867
Query 907 ATTATGGAATAA 918
| ||||||||||
Sbjct 868 AGTATGGAATAA 879
Score = 213 bits (115), Expect = 2e-54
Identities = 126/131 (96%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 561 GTCATCGGAGCATTACACACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAA 620
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GTCATCAGAGCATTACGCACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAA 616
Query 621 GCTTCCCCC-ACGTAAAAGAACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTC 679
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 617 GCTTCCCCCCACGTAAAAGAACAAGATCTGAGAGAAATACTTCACAAAAAGAAGAAAGTT 676
Query 680 CTATGATGGTT 690
|||||||||||
Sbjct 677 CTATGATGGTT 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5