BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35935.1
Length=6504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354767 jgi|Araly1|354767|fgenesh1_pg.C_scaffold_7001940 472 2e-131
> Ahg354767 jgi|Araly1|354767|fgenesh1_pg.C_scaffold_7001940
Length=921
Score = 472 bits (255), Expect = 2e-131
Identities = 432/515 (84%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 628 ATGGTCGTGGACTCCATCCAACTGTAGGAACAAAT-TCGTTAGAGGAGACTTGCTTATTC 686
||||||| ||||||||| ||| | ||||||| ||| | ||||||| || ||||||||||
Sbjct 419 ATGGTCGAGGACTCCATTCAATTCTAGGAAC-AATGCCTTTAGAGGGGATTTGCTTATTC 477
Query 687 ATTTATCGAAACCTGATGGATAGTGTTGATTGTTTTTCACCGGATGCAACTCTAATTGTG 746
| ||||||||||||||||||||||| || || ||| ||||||||||||||||||||| ||
Sbjct 478 AATTATCGAAACCTGATGGATAGTGCTGTTTATTTATCACCGGATGCAACTCTAATTTTG 537
Query 747 AAGCTTAGTGGATTAGTATTTTTCTCAAACCTTATTTGTTGTGATGCGA-TCTTTGCACC 805
||||| |||||||||||||||||||||||| ||| ||||||||||||| || ||| |
Sbjct 538 AAGCTCAGTGGATTAGTATTTTTCTCAAACTTTAGATGTTGTGATGCGATTC-AAGCATC 596
Query 806 TGTTCCTATTTGTGTTTGTATCTTGAGGATCTATATTCCCACTAGCAAGCCTAACCATGT 865
| || ||| |||| | ||| ||||| || |||||||||| |||||||||||| |||
Sbjct 597 GGCTCTTATATGTGAATATATATTGAGTATGGATATTCCCACCAGCAAGCCTAACTATGG 656
Query 866 CACCCCAAGCCTAATGGGCGAAGCATCCCAACCTTCTCAAACTTTTTGGATAAAACCGCC 925
| |||| || |||||||| |||||||||||||| |||| ||| |||||||||||||||||
Sbjct 657 CGCCCCCAGACTAATGGGTGAAGCATCCCAACCCTCTCGAACCTTTTGGATAAAACCGCC 716
Query 926 TCAAAGAAAACTCCATCCGAGCT-CCGCTGCATTCTT-TGTGTATTGGACTTGTGA-ATT 982
|| |||||||| ||||||| | |||||||||| || || || |||||||||||| |||
Sbjct 717 TC---GAAAACTCTATCCGAG-TCCCGCTGCATT-TTCTGCGTTTTGGACTTGTGATATT 771
Query 983 CCCTTGGCGAATCCAGCAAACTTACTCCTCTATGGAGATACCATCTTTGGAACCTTACTT 1042
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 772 -CTTTGGCGAATCCAGCAAACTTACTCCTCTAAGGAGATACCATCGCCGGAACCTTACTC 830
Query 1043 TGGCAGCGAGGAAAA-GCCTCCGCCCGCAACCTCCTCCATGGA-ACACCTTTT-CGAAAG 1099
| ||| | |||||| | |||| |||||| |||||| |||||| | || || | | ||||
Sbjct 831 TCGCATTG-GGAAAAAGTCTCCACCCGCAGCCTCCTACATGGAGA-AC-TTCTACAAAAG 887
Query 1100 CTCTT-TGGCGTT-AATCGTACGAGCTTATTATGA 1132
||||| || |||| |||||| ||||||||||||||
Sbjct 888 CTCTTATG-CGTTCAATCGTGCGAGCTTATTATGA 921
Score = 265 bits (143), Expect = 4e-69
Identities = 213/246 (87%), Gaps = 7/246 (3%)
Strand=Plus/Plus
Query 200 TTGGATCCATCTCTGTC-CCTGAAACCAAAATCAGAAGATCCACAACAGTTCAGCGGCTC 258
|||||| |||||||||| || || |||||| |||||| | ||||||||| || ||||||
Sbjct 172 TTGGATGCATCTCTGTCTTCT-AACCCAAAACCAGAAGCTTCACAACAGTCCAACGGCTC 230
Query 259 TTTACCTCAAACATCAGAGCAAGTCTTCATCGATTTATCTTTAGGCTCTAGATCTGGACT 318
| ||||||||||||||||||| ||||||||| || | ||| |||||||||||||||
Sbjct 231 CTCCCCTCAAACATCAGAGCAAGGCTTCATCGACATAACAATAGTCTCTAGATCTGGACT 290
Query 319 AGCAACGCCACCA-TTA--GTTCCTTCTCACCGGATTTCGTTGATGGCAGGAGTATCTCT 375
| || || | ||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATCACCGACGCCATTTATGGCTCCTTCTCACCGGATTTCGTTGATGGCAGGAGTATCTCT 350
Query 376 TGGACCATCAGATGTG-CATTTTCCGGTGAGAACGTCGACGGCACACGACGAGCTCAAAA 434
|||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||
Sbjct 351 TGGACCATCAGATGTGTC-TTTTCCGGTGGGAACGTCGATGGCACACGACGAGCTCAAAC 409
Query 435 GCTGGC 440
||||||
Sbjct 410 GCTGGC 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 246498900321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5