BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35940.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493643 jgi|Araly1|493643|fgenesh2_kg.7__3076__AT5G35940.1 1125 0.0
> Ahg493643 jgi|Araly1|493643|fgenesh2_kg.7__3076__AT5G35940.1
Length=1329
Score = 1125 bits (609), Expect = 0.0
Identities = 727/783 (93%), Gaps = 12/783 (2%)
Strand=Plus/Plus
Query 577 GGTCAAGTGGAATGCTATGAGTACGGGGACAA-AACCGGAACACAATATAAGATTACGGT 635
|||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||
Sbjct 490 GGTCAAGTGGAATGCTATGAGTACGGGGACAAGAA-CGGAACAGAAGATAAGATTACGGT 548
Query 636 GAATTATCCATATGAATGTATCACATCCGTAGAAGGAAGCTACGCAAATACCCAA-CCTT 694
||||||||||||||||||||||||||| || | |||||||||||| || |||| ||||
Sbjct 549 GAATTATCCATATGAATGTATCACATCTGTTGGTGGAAGCTACGCATTTA-CCAACCCTT 607
Query 695 ATGGATGTATTGTCCTTAGGTCGTTAACATTCAAAACATCAAATGGGAGGACCTTAGTAA 754
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 608 ATGGATGTATTGTCCTTAGGTCGTTAACTTTCAAAACATCAAATGGGAGAACCTTAGTAA 667
Query 755 TTGGAACAGTGACTGGTACCAAGTTCTTGCTTG-AGAGCAAAGGAAATGCTATTGTTGGG 813
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 668 TTGGAACAGTGACTGGTACCAAGTTCTCGC-TGCAGAGCGAAGGAAATGCTATTGTTGGG 726
Query 814 TTCCATGGACGGGTAGGTTCTTGTGTTGATAGTATCGGTGCATATTACGCTCCGTTTTCT 873
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 727 TTCCATGGACGGGTAGGTTCTTGTGTTGATAGTATTGGGGCATATTACGCTCCGTTTTTT 786
Query 874 CCTTCTCCTCCACCTACACAGAAACTAGAGGGACAAGGTGGTGATGGAGGAGATTCTTGG 933
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 787 CCTTCTCCTCTACCTACAGAGAAACTAGAGGGACAAGGTGGTGACGGAGGAGACTCTTGG 846
Query 934 GACGATGGTGCTTTCCTAAATGTAAAGAAAGTATATATTGGACAAGGCTCGAACGGTATT 993
||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||
Sbjct 847 GACGATGGTGCTTTCCTAAATGTGAAGAAGGTATACGTAGGACAAGGCTCGAACGGTATT 906
Query 994 GTCGCCGTTAAGTTTGAGTACGAGAACGACGCTAGTGAGGTTGTTGTTGGAGATGAACAT 1053
|||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 907 GTCGCCGTTAAGTTTGAGTATGAGAACGATGCTAGTGAGGTGGTTTTTGGAGATGAACAT 966
Query 1054 GGAAAGACTACATTGCTTGGATACGAAG-TGTTCGAGCTGGATTATCCGAATGAATACAT 1112
|||||||| |||||||||||||| |||| | ||| ||||||||||||||| |||||||||
Sbjct 967 GGAAAGACGACATTGCTTGGATATGAAGAT-TTCAAGCTGGATTATCCGAGTGAATACAT 1025
Query 1113 CACATCATTGGAGGGTTGCCACGACAAGG-TCATGGGAGCTGAAACTGGAGTTATAACAA 1171
|| ||| |||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 1026 CATTTCAGTGGAGGGTTGCCACGACA-GGATTATGGGAGCTGAAACTGGAGTTATAACGA 1084
Query 1172 TGCTTAGGTTCAAGACAAACAAACGTACCTCTCCA-CCTTTTGGACTTGAAGCTGGTGTC 1230
|||||||||||||||||||||| || ||||||| | || |||||||||||||||||||||
Sbjct 1085 TGCTTAGGTTCAAGACAAACAATCGCACCTCTC-ATCCCTTTGGACTTGAAGCTGGTGTC 1143
Query 1231 AACTTCGTCCTCCAGAAGGAAAGTCACAAGATCACTGGGTTCCATGGAAAGTCCAGTACT 1290
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1144 AACTTCGTCCTCCAGAAGGAAGGTCACAAGATCACTGGGTTCCATGGAAAATCCAGTACT 1203
Query 1291 ATGCTTCATCAGATTGGGGTTCATGTCGTTCCCATCACTGAGTGACCATCCATAGCTACC 1350
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1204 ATGCTTCATCAGATTGGGGTTCATGTCGTTCCCATCACTAAGTGACCATCCACAGCTACC 1263
Query 1351 TTT 1353
|||
Sbjct 1264 TTT 1266
Score = 651 bits (352), Expect = 0.0
Identities = 450/497 (91%), Gaps = 7/497 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCTAATGGTGAACGCTAAAGGTGGAAATGGAGGGAAAGAATGGGATGATGGGTTT 60
||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 1 ATGGCCCTAATGGTGAAAGCTCAAGGTGGAAATGGAGGGAAGGAATGGGATGATGGATTC 60
Query 61 GATTATGAGGGTGTAACAAAGATACATGTCCGAGCTGGTTCTGAAGGCATTCAGTTCATC 120
| |||||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||
Sbjct 61 AACTATGAGGGTGTAACAAAGATTCATGTACGAGCCGGTTATGATGGCATTCAGTTCATC 120
Query 121 AAGTTTGACTATGTCAAGGTTGGAAAAACTATTGATGGACCAATCCATGGTGTTTCTGGC 180
|||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 121 AAGTTTGAATATGTCAAGGCTGGAAAAACTATTGTTGGACCAATCCATGGTGTCTCTGGT 180
Query 181 CTTGGTATGACACAAACGTTTGAGATTAACCATTTGCAAAAGGAATATCTGGTATCTATT 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 CTTGGTATGACACAAACGTTTGAGATTAACC---TGCAAAAGGAATATCTGGTATCTGTT 237
Query 241 GAGGGTTACTATGACAAATCTACGGGCGTGATTCAATCAATCCAATTCAAAACTAACGTG 300
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||| |
Sbjct 238 GAGGGTTACTACGACAAATCTACGGGAGTGATCCAATCAATCCAATTCAAAACAAACGAG 297
Query 301 AAGACTTCTGATATGATGGGGTTCAACAAGGGTACTAAGTTTTCCCTAGGAATCATAAGG 360
||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 298 CAGACTTCTGATTTGATGGGGTTCAACAAGGGTACTAAGTTTTCACTAGGAACCACGAGG 357
Query 361 A-ACAAGATCATTGGGTTTCATGGATTTTCTGACAAGAATGTCTATTCTCTTGGAGCATA 419
| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 358 AGA-AAGATCATTGGGTTTCATGGATTTGCTGACAAGAAGGTCTACTCTCTTGGAGCATA 416
Query 420 TTTCATCAAGG-TTCTTGCAACCAAATCGGGAATGCAAGGTGGTCAAAACACAGGGAAAA 478
|||||||| || ||| |||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 417 TTTCATCA-GGATTCCTGCAACCAAATCGGCAATGCAAGGTGGTCAAACCACAGGCAAAG 475
Query 479 GTTATGATTATGGTGGT 495
|||| ||| ||| ||||
Sbjct 476 GTTACGATGATGCTGGT 492
Score = 102 bits (55), Expect = 7e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 1438 TTTGTGTTCCATTATGCATCGTTAACGTATTTTCACTTTTCAGATAATAAAAAGACAATT 1497
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1266 TTTGTGTTCCATTATGTATCTTTAACCTATTTTCACTTTTCAGATAATAAAAAGACAATT 1325
Query 1498 ATGT 1501
||||
Sbjct 1326 ATGT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5