BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35960.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355584 jgi|Araly1|355584|fgenesh1_pg.C_scaffold_7002757 1768 0.0
Ahg941423 jgi|Araly1|941423|scaffold_601967.1 209 3e-53
> Ahg355584 jgi|Araly1|355584|fgenesh1_pg.C_scaffold_7002757
Length=1215
Score = 1768 bits (957), Expect = 0.0
Identities = 1133/1219 (93%), Gaps = 8/1219 (1%)
Strand=Plus/Plus
Query 76 ATGAAAGTTCCAGATTCTTCTTCACCGACCGGAGTTCTCGAAGAATTCTTCAGAACCGAA 135
||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGAAAGCTCCAGATTCTTCTTCGCCGACTGGAGTTCTCGAAGAGTTCTTCAGAACCGAA 60
Query 136 GAATTCAATAGCTCCTCCGAGACGGTCAA-GA--ACCCTTCCTCTTCTCGTTTCCGCAAG 192
|||||| ||| ||| |||||||| || || | ||||||||||||||||||||||||
Sbjct 61 GAATTCGGTAG---CTCGGAGACGGTAAAGGAGTATCCTTCCTCTTCTCGTTTCCGCAAG 117
Query 193 ATGGTTCAGCTTCTCAGAAGCAAATCCAAAAAGTCTCTTGAGAATGTCAAGATTCCGTTT 252
|| ||||||||||| ||||||| ||||||||||||| | |||||| |||||||||| |||
Sbjct 118 ATTGTTCAGCTTCTGAGAAGCAGATCCAAAAAGTCTATAGAGAATCTCAAGATTCCTTTT 177
Query 253 CACAACAATGGTGTTATTAAGAGTTCTTTTAGAAGATGCAGTAGCATGAGAGAAAATCTC 312
|||||||| ||||||||| |||||||||| |||||||| |||||||||||||| || |||
Sbjct 178 CACAACAACGGTGTTATTCAGAGTTCTTTGAGAAGATGTAGTAGCATGAGAGATAACCTC 237
Query 313 AGATTTAGCTCCAATGATTCTCACTTTCTTCTACATTCTCCTAGAAGAATCTTCACCTTC 372
|||||| |||||| |||| | || |||||| ||| |||||| ||||||||||||||||||
Sbjct 238 AGATTTGGCTCCAGTGATGCACAGTTTCTTTTACTTTCTCCCAGAAGAATCTTCACCTTC 297
Query 373 TCTGACCTCAAGTCTGCTACAAACAATTTCTCTTTAGAAAATCTAATTGGGAAAGGAGGT 432
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 298 TCTGACCTCAAAACTGCTACAAACAATTTCGCTTTAGAGAATCTAATTGGGAAAGGAGGT 357
Query 433 TATGCTGAAGTTTACAAAGGGATGTTACCAAATGGACAAATGGTAGCGATAAAACGGTTG 492
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 358 TATGCTGAAGTTTACAAGGGGATGTTGCCAAATGGACAAATGGTTGCGATAAAACGGCTG 417
Query 493 ATGCGGGGAAATAGTGAAGAGATCATTGTAGACTTTCTTTCGGAGATGGGTATAATGGCA 552
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 418 ATGCGGGGAAATAGCGAAGAGATCATTGTAGATTTTCTTTCAGAGATGGGTATAATGGCA 477
Query 553 CATGTTAACCATCCCAACATAGCTAAGCTTTTAGGCTATGGAGTTGAAGGAGGAATGCAT 612
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 CATGTCAACCATCCAAACATAGCTAAGCTTTTAGGCTATGGGGTTGAAGGAGGAATGCAT 537
Query 613 CTTGTTCTTGAGTTATCACCTCATGGCAGCTTAGCTTCTATGCTCTATAGCTCCAAGGAG 672
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 538 CTTGTTCTTGAGTTATCACCTCATGGCAGCTTAGCTTCTATGCTTTATAACTCCAAGGAG 597
Query 673 AAGATGAAATGGAGCATTAGGTACAAGATAGCATTAGGAGTTGCGGAGGGTCTAGTGTAT 732
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||
Sbjct 598 AAGATGAAATGGAGTATCAGGTACAAGATAGCATTGGGAGTTGCGGAGGGTCTGGTTTAT 657
Query 733 CTTCATAGAGGATGTCATAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTT 792
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTACACAGAGGATGTCACAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTT 717
Query 793 CTCACACATGATTTTTCTCCTCAGATATGTGACTTTGGGCT-TGCGAAGTGGTTACCTGA 851
||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||
Sbjct 718 CTCACACATGATTTTTCGCCTCAGATATGTGACTTTGGACTCT-CGAAGTGGTTACCTGA 776
Query 852 AAATTGGACACACCACATTGTTTCCAAATTTGAGGGCACATTCGGGTATCTTGCTCCAGA 911
||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 777 AAATTGGACACACCATATTGTTTCCAAGTTCGAGGGCACATTCGGATATCTTGCTCCAGA 836
Query 912 GTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTATTCGCCTTGGGTGTACTTTT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTATTCGCCTTGGGTGTACTTTT 896
Query 972 ACTGGAACTTGTTACCGGACGACGAGCTCTCGATTACTCCAAGCAAAGTCTTGTTCTATG 1031
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACTAGAACTTGTTACTGGAAGACGAGCTCTCGATTACTCCAAGCAAAGTCTTGTTCTATG 956
Query 1032 GGCTAAACCATTGATGAAGAAGAACAAAATTAGAGAGCTAATCGATCCATCTCTGGCGGG 1091
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 957 GGCTAAACCATTGATGAAGAAGAACAAAATAAGAGAGCTAATCGATCCATCTCTGTCGGG 1016
Query 1092 TGAGTACGAATGGAGGCAGATAAAACTTGTGCTTTTGGCTGCTGCGTTATCAATCCAACA 1151
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1017 TGAGTACGAGTGGAGGCAGATAAAAAGTGTGCTTTTGGCTGCTGCGTTATCAATCCAACA 1076
Query 1152 ATCATCGATAGAGAGGCCTGAAATGAGTCAGGTTGTTGAGATCCTCAAAGGCAACTTGAA 1211
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 GTCATCAATAGAGAGGCCTGAAATGAGTCAGGTTGTTGAAATCCTCAAAGGCAACTTGAA 1136
Query 1212 AGATCTCAAGTGCATCATGAAATGCAGAGTTCCCTTTTATAGGAAAGCTTTCAGGGATGA 1271
||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||
Sbjct 1137 AGATCTCAAGTGCATCATGAAATGCAGAGTTCCTTTTTATCGAAAAGCATTCAGAGATGA 1196
Query 1272 AGTTGGCAAAAAAGATTAG 1290
||||||||| | |||||||
Sbjct 1197 AGTTGGCAAGAGAGATTAG 1215
> Ahg941423 jgi|Araly1|941423|scaffold_601967.1
Length=1590
Score = 209 bits (113), Expect = 3e-53
Identities = 389/517 (75%), Gaps = 40/517 (8%)
Strand=Plus/Plus
Query 562 CATCCCAACATAGCTAAGCTT-TTAGGCTATGGAGTTGAAGGAGGAATGCATCTTGTTCT 620
||||| ||||| ||||||||| || || ||| | ||||||||||||||||||||||||||
Sbjct 767 CATCCAAACATTGCTAAGCTTATT-GGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCT 825
Query 621 TGAGTTATCACCTCATGGCAGC-TTAGCTTCTATGCTCTAT-AGCTCCAAGGAGAAGAT- 677
|||| |||| ||| |||| ||| || |||||| ||||||| || | |||| ||| ||
Sbjct 826 TGAGCTATCTCCTAATGGAAGCCTT-GCTTCTTTGCTCTACGAGG-CGAAGGGGAA-ATT 882
Query 678 GAAATGGAGCATTAGGTACAA-GATAGC-ATTAGGAGTTGCGGAGGGTCTAGTG-TATCT 734
||| |||||||| || ||||| | | || || ||| || ||||| || || |||||
Sbjct 883 GAATTGGAGCATGAGATACAAAG-TGGCCATG-GGAACAGCAGAGGGACT-GTACTATCT 939
Query 735 TCATAGA-GGATGTCATAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTTC 793
||| || || ||||| || || || || |||| ||| || ||||| | ||||| ||||
Sbjct 940 CCAT-GAAGGTTGTCAGAGAAGGATCATTCATAAAGACATTAAAGCTTCTAACATCCTTC 998
Query 794 TCACACATGATTTTTCTC-CTCAGATATGTGACTTT-GGGCTTGCGAAGTGGTTACCTGA 851
|||| || || ||| ||||||||| ||| ||| ||||| ||||| ||| |||| ||
Sbjct 999 TCACTCA-GAACTTTGAGGCTCAGATATCTGA-TTTCGGGCTAGCGAAATGGCTACCGGA 1056
Query 852 A-AATTGGACACACCACATTGTTTCCAAATTTGAGGGCACATTCGGGTATCTTGCTCCAG 910
||| |||| ||||| | ||| || ||| | || || |||||||| || ||| | || |
Sbjct 1057 CCAAT-GGACTCACCATACTGTATCGAAAGTCGAAGGAACATTCGGTTACCTTCCACCGG 1115
Query 911 AGTACTTAACACATGGGATAGTAGATGAAAAGACCGATGTAT-TCGCCT-TGGGTGTACT 968
||| ||| | |||||||||||||| ||||| || || |||| | || | ||| ||| ||
Sbjct 1116 AGTTCTTCATGCATGGGATAGTAGACGAAAAAACAGACGTATAT-GCTTATGG-TGTCCT 1173
Query 969 T-TTACTGGAACTTGTTACCGG-ACGACGAGCTCTCGATTA-CTC-CAAGCAAAGTC-TT 1023
|| || || || ||||||| | ||| ||||||||| | ||| ||| || || | ||
Sbjct 1174 GCTT-CTAGAGCTCATTACCGGTA-GACAAGCTCTCGAC-AGCTCACAA-CATAG-CATT 1228
Query 1024 GTTC-TATGGGCTAAACCATTGATGAA-GAAGAACAA 1058
|| | | ||||| || ||||| || || || ||||||
Sbjct 1229 GT-CATGTGGGCCAAGCCATTAATCAAAGA-GAACAA 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5