BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36000.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120 1587 0.0
Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117 318 4e-86
> Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120
Length=1080
Score = 1587 bits (859), Expect = 0.0
Identities = 1003/1072 (94%), Gaps = 12/1072 (1%)
Strand=Plus/Plus
Query 9 GAGATCTGGTGATGCCGAAGGAGATATTAGAGGGAAGATGATAGCTCCGGTGAGAGACGG 68
|||||||||||||| |||||||||| ||||||||||| ||| | ||||||| |||||||
Sbjct 9 GAGATCTGGTGATGTTGAAGGAGATAGTAGAGGGAAGAGGATCGTTCCGGTGGGAGACGG 68
Query 69 AAATGGTGGACAGAAGAGAAAATTGGT----A-C-A-G---AG--CAACGATATTCAGAG 116
||||||||||| ||||||||||||||| | | | | || |||||| |||||||
Sbjct 69 AAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGATCTTCAGAG 128
Query 117 AGACGAAGATGGTGGAGCAAAGAGAAGAATCATTCAGAGCAGCGACCAGAAGAACGGGAA 176
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 129 AGACGAAGATGGTAGAGCGAAGAGAAGAATCGTTCAGAGCAGCGACCAGAAGAACGGGAA 188
Query 177 GATCCTGAGAGGAATCCATGGCTGTGTATCTCCTCGGTGCTCTGCTCCGACTTACCAGTC 236
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 189 GATCCTCAGAGGAATTCATGGCTGTGTATCTCCTCGGTGCTCTGCTCAGACTTACCAGTC 248
Query 237 TCGCTTCTCCTGGTATGAGCAAGATATATGGACATACATAACAAGGTTTTTGGATGGTAA 296
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 249 TCGCTTCTCATGGTTTGAGCAAGATATATGGACATACATTTCAAGGTTTTTGGATGGTAA 308
Query 297 ATCATTGGTGAAGCTGGGAGCAACGAACAAATGGTTCTATAAGATTGCAATGGAGGATAC 356
|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 309 ATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTACAAGATCGCAATGGAGGATAC 368
Query 357 TGTTTGGAGGTTTGCATGCTTGCGTGATCTTCAGGTCCCTGAGACGTTTCCAGTTTCTTC 416
||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 369 TGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTCAGCCGTTTCCCGTTTCTTC 428
Query 417 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCACCA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 429 CACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTTGTTCCGTCA 488
Query 477 GAAGGAGAAGCATATTGATTGGATGCGTCTTGGTGCCTTTGTTCTTGACTCTCGAACTTC 536
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 489 GAAGGAGAAGCATATTGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTCTCGAACTTC 548
Query 537 ATTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAAGTCCCAACAGAAGGAACTATAGAACA 596
| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 549 ACTCCTGACTGAGAGTTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAACCATAGAATG 608
Query 597 AATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTATTTGGATTGC 656
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 609 AATGTTACAATCTAGTGGTTCATGTGTTATCAACGACATCAAAAGCGGTATTTGGATTGC 668
Query 657 AGATTTACAGCTTTTGCGTTGCCCTCTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 716
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 GGATTTACAGCTTGTGCGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGGAACAATGCA 728
Query 717 AACTCTTGATGTTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 776
||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 AACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAGATGGAAGCTG 788
Query 777 GGATTATAATCTGATTGGATCTCATAAGTTGGAGAAAGACGCAAGTGCAGCCTGTGGAGC 836
|||||| ||||| ||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 789 GGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAGCTTGTGGAGC 848
Query 837 CATATTTGACCTCAAACACCTTAAAAAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 896
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 849 CATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCAACCTCAAGTC 908
Query 897 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGC 956
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 909 TTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCATGCAGTTGC 968
Query 957 TGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1016
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TGTTCACACAAGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGC 1028
Query 1017 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1080
> Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117
Length=300
Score = 318 bits (172), Expect = 4e-86
Identities = 184/190 (97%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 878 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTA 937
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTGAAGCAGTTA 166
Query 938 TTGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAACAAAACGAAGGAATCCTTGTGA 997
| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 167 TCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATACTTGTGA 226
Query 998 AGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGC 1057
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 227 AGTACCACACAATGAAAGCAAGAACAGACGGTGACATTGTTTCCATAAGAATCTCCCAGC 286
Query 1058 AGCTTCTCTG 1067
||||||||||
Sbjct 287 AGCTTCTCTG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5