BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36001.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349229 jgi|Araly1|349229|fgenesh1_pg.C_scaffold_5002621 1254 0.0
Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120 289 5e-77
Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117 265 9e-70
> Ahg349229 jgi|Araly1|349229|fgenesh1_pg.C_scaffold_5002621
Length=960
Score = 1254 bits (679), Expect = 0.0
Identities = 869/954 (91%), Gaps = 40/954 (4%)
Strand=Plus/Plus
Query 320 ATGACTTTCTCAAAACAATTCCCtcttcttctctatttcttcttcttcttctactttcCT 379
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||
Sbjct 1 ATGACTTTCTCAAAACAATTCCCTCTTCTTCTC--TTT-TTCTTCTTCTTCTTCTTCCCT 57
Query 380 CTCCTAAATGCCTCAAAACCAAAACGTTGCTACAGTT-CTTCATGTGGAGGAAACAACCT 438
||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||
Sbjct 58 CTCCTAAATGCCTCAGAACCAAAACGTTGCTACAGTTCCTCCA-CAGGAGGAAACAACCT 116
Query 439 TGACGTTAGCTTCCCTTTCTGGCTATCTCCTGAGCAATCTTCGTCATGTGACTACCCAGG 498
||||||||| ||||||||||||||| | ||||| |||||||| || |||| |||||||||
Sbjct 117 TGACGTTAGGTTCCCTTTCTGGCTACCCCCTGATCAATCTTCTTCCTGTGGCTACCCAGG 176
Query 499 ATTCAACCTCCATT-----G-T-G-----AGACAGCCTTAAAGCTTCCAAATTCCAGA-C 545
|||||||||||||| | | | |||||||||||||||||||||| ||| || |
Sbjct 177 ATTCAACCTCCATTGCACCGATCGTCATAAGACAGCCTTAAAGCTTCCAAACTCCGGATC 236
Query 546 GATTTCTCGTCCAAGACATAAAGTCGCAGCGTATTCACCTTAGAGACCCCGATAACTGCT 605
||||||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||||||
Sbjct 237 -ATTTCTCGTCCGAGACATAAAATCGCAGCGTATTCGCCTCAGCGACCCTGATAACTGCT 295
Query 606 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAATGTCTCCTTTTTCTCCTCTTCACCTTG 665
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 TAGCCAGACGGCTTCTCAGCTTCGACGCTTCAGGGTCTCCTTTTTCTCCTCTTCACCTTG 355
Query 666 TCAACTACACTTTCTTGAGCTGTCATAACGAAAACGTCAAATCCTCTTCTTTGGAACCCA 725
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 356 TCAACTACACTTTCTTGAGCTGTCCTACCGAAAACGTCAAATCCTCTTCTTTGGAACCCA 415
Query 726 TCCATTGCC-T--T-ACT----AA--------TT--CCACACCTTCAGATCTCACCGGTT 767
||||||||| | | ||| || || ||||||||||||||||||||||||
Sbjct 416 TCCATTGCCTTGGTAACTCCACAACCTCCTTCTTAGCCACACCTTCAGATCTCACCGGTT 475
Query 768 CAATGCCGTCCTCTTGTCAAACCTTGAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 827
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 476 CAATGCCGTCCTCTTGTCAAATCTCCAAGACACTACTTCTTCCGGTCTCTTCACCACTCG 535
Query 828 CAGGTGATCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 887
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCGTTGACCTCAACAAACAAGACCTCTGGCTGAAATGGGACTCACCGGATTGCACAGGTT 595
Query 888 GTGTTGATTTTAGTCCGTTATGTAGCTTCATAAACAATACCATCCTCAAAGTCAAATGCT 947
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 596 GTGTTGATTTTAGTCCGTTATGTGGCTTCATAAACAATACCACCCTCAAAGTCAAATGCT 655
Query 948 TCACATACGTTGATTCTGGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCC 1007
|| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 656 TCGCATACGTTGATTCCGGAAACCCCTGGTTAATAACGTTAAAGATATTGTGCTTATGCC 715
Query 1008 TATCCGTACCATTCTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAATCC 1067
|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 TATCGGTACCATTCTTCCTAGTGATAACTCCTGCCCTCTGTATCATTTTTATCCCAATCC 775
Query 1068 --AA-CAACAAGCCAAGAGTGTCCCTTGGCGAAATGACACTCTCTGTCCCATTTGTTTAT 1124
|| ||| || |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 AAAACCAAAAATCCAAGAATGTCCCTTGGCGAAATGATACTCTCTGTCCCATTTGTTTAT 835
Query 1125 CAGAATACACAAGTGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAGAATACACAAGTGAAGAGACCGTTAAGTGCTTACCCGAATGTGAACATTGCTTCCACA 895
Query 1185 CCGAATGCATCGACCCGTGGCTCAAGTTGCATAACTCTTGTCCGGTTTGTCGGA 1238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 CCGAATGCATCGACCCGTGGCTCAAGTTGCATAATTCTTGTCCGGTTTGTCGGA 949
> Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120
Length=1080
Score = 289 bits (156), Expect = 5e-77
Identities = 160/162 (99%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 1 GAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGCTGTTCACACA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 919 GAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCATGCAGTTGCTGTTCACACA 978
Query 61 AGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 1038
Query 121 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTGA 1080
> Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117
Length=300
Score = 265 bits (143), Expect = 9e-70
Identities = 155/161 (96%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 GAGGCAGATGATTCCCAACCTAAAGCAGTTATTGCACCCCATGCAGTTGCTGTTCACACA 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 136 GAGGCAGATGATTCCCAACCTGAAGCAGTTATCGCACCCCATGCAGTTGCTGTTCACACA 195
Query 61 AGATTGCAACAAAACGAAGGAATCCTTGTGAAGTACCACACAATGAAAGCAGGAACAGAC 120
||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 196 AGATTGCAAGAAAACGAAGGAATACTTGTGAAGTACCACACAATGAAAGCAAGAACAGAC 255
Query 121 GGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTG 161
||||||||||||||||| |||||||||||||||||||||||
Sbjct 256 GGTGACATTGTTTCCATAAGAATCTCCCAGCAGCTTCTCTG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5