BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36100.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493651 jgi|Araly1|493651|fgenesh2_kg.7__3084__AT5G36100.2 717 0.0
> Ahg493651 jgi|Araly1|493651|fgenesh2_kg.7__3084__AT5G36100.2
Length=746
Score = 717 bits (388), Expect = 0.0
Identities = 556/632 (88%), Gaps = 31/632 (5%)
Strand=Plus/Plus
Query 1 ATGAAATCTTCTGTTGTGCTGTCCAAATCTCAACACGTGTCCCTCTGTCTCTCTCGTCTT 60
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 124 ATGAAATCTTCTGTTGTGTTGTCCAAATCTCAACACGTGTCCCTCTGTTTCTCTTGT-TT 182
Query 61 T-AGAGAAG---t-----tt-tttt-A-----CTCTTCCGATGGCATCTTTGGTTATCCT 104
| |||||| | || |||| | ||| |||||| |||||||||||| |||
Sbjct 183 TCGGAGAAGTTTTGCAACTTCTTTTGATGTTTCTCGTCCGATACCATCTTTGGTTAACCT 242
Query 105 CG--C--TTTGATCGCCTAATCAGCAGTGTGATCGGATGGAAGAAGTCACAAGAGTGGAT 160
|| | |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 243 CGACCGTTTTGATCGCCTAAT---CAGTGTGAT---ATGGAAGAAGGCACAAGAGTGGAT 296
Query 161 GGGAAGATGGGTTGGCTTTGGAGGAAAGGAGTTAGTGTGGGAAAGAAGGTTCTTGCAGCA 220
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGGAAGATGAGTTGGATTTGGAGGAAAGGAGTTAGTGTGGGAAAGAAGGTTCTTGCAGCG 356
Query 221 TGTTTTCTAGTGTTTTCTGCACCGTTCCTCGTTCCCGCACTCGTTGTTGCCTCCACAATC 280
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 357 TGTTTTCTAGTGTTTTCTGCACCGTTCCTCGTTCCAGCACTCGTAGTTGCCTCTACAATC 416
Query 281 GCGTTGATTTCGTCCCTTCCTTATTGTTTTTTCTTGGTGAGCTATGTTTGTACTGAAAAG 340
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 417 GCGTTGATTTCGTCACTTCCTTATTGTTTTTTCTTGGCGAGCTATGTTTGTACGGAGAAG 476
Query 341 TTGATGAGAAAACTGCTTCCTGCTAATGCGTTTAGTGGAAGATGTGATCATGAAATGGTG 400
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 477 TTGATGAGAAAGCTGCTTCCTGCTAATGCGTTTAGTGGAAGAAGTGATCATAAAATGATG 536
Query 401 CTACACCAGAACAAGATCAGTCACGGTGATATTTATGATGAAGCCGT-TGCGCGAGTGGC 459
|||| || ||||||||| || |||||||||| |||||||||| | | | | |||||| |
Sbjct 537 CTACTCCCCAACAAGATCGGTGACGGTGATATATATGATGAAGGCATAT-CACGAGTGTC 595
Query 460 TATAAGTGAGCCTG-TTCTTGTTCAGATTGAAGAAGAGACAACGATCGCAATAGCTTATC 518
|||||||||||| | |||||||||| ||||| ||||||| || || ||||||||||||
Sbjct 596 TATAAGTGAGCC-GATTCTTGTTCATATTGAGGAAGAGAGGACTATTGCAATAGCTTATA 654
Query 519 GGGAAGATGAGGATATGACGAAAGAGTTAAAGAGCTGGTTAGAGAGTATAAGAGACGAGG 578
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||
Sbjct 655 GGGAAGATGAGGATATGACAAAAGAGTTAAAGAGCTGGTTAGAGAGTATTACAGATGAGG 714
Query 579 GTAAAAATAATCAATCACTTTATAGAGGAGTC 610
|||||||||||||||||||| |||||||||||
Sbjct 715 GTAAAAATAATCAATCACTTGATAGAGGAGTC 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5