BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36110.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493652 jgi|Araly1|493652|fgenesh2_kg.7__3085__AT5G36110.1 2268 0.0
> Ahg493652 jgi|Araly1|493652|fgenesh2_kg.7__3085__AT5G36110.1
Length=1437
Score = 2268 bits (1228), Expect = 0.0
Identities = 1367/1434 (95%), Gaps = 10/1434 (1%)
Strand=Plus/Plus
Query 6 CATGGCAATCATGATTATCCTCTTCCTTAGCTCCATTCTTCTTTCTCTCCTATTGCTCCT 65
|||| ||||||| | | ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 9 CATGACAATCAT-A-T-TCCTCTTCCTTAGCTCCATTCTTATTTCTCTCCTATTACTCCT 65
Query 66 TAGAAAACATTTGTCACACTTCTCCTATCCCAACCTTCCTCCCGGAAATACCGGCCTTCC 125
|||||||||||| ||| ||||||| ||||||||||||||||| ||||| |||||| ||||
Sbjct 66 TAGAAAACATTTATCAAACTTCTCATATCCCAACCTTCCTCCGGGAAAGACCGGCTTTCC 125
Query 126 CTTAATCGGAGAGAGTTTCTCCTTCCTCTCTGCTGGCCGTCAAGGCCATCCAGAGAAGTT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CTTAATCGGAGAGAGTTTCTCCTTCCTCTCTGCTGGCCGTCAAGGCCATCCAGAGAAGTT 185
Query 186 CATCACTGACCGAGTTCGTCG-TT-TC-TCCTCCTCCTCCTCATGTGTCTTCAAGACCCA 242
|||||| |||||||| ||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 186 CATCACCGACCGAGTGCGTCGTTTCTCTTCCTCATCCTCCTCATGTGTCTTCAAGACCCA 245
Query 243 CCTCTTTGGGTCTCCCACCGCGGTGGTGACTGGTGCATCTGGGAACAAGTTTCTATTCAC 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 246 CCTCTTTGGGTCTCCCACCGCGGTGGTGACTGGTGCCTCTGGGAACAAGTTTCTATTCAC 305
Query 303 TAACGAGAACAAGCTTGTGGTCTCGTGGTGGCCAGATTCCGTTAATAAGATCTTCCCTTC 362
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 306 CAACGAGAACAAGCTTGTGGTCTCGTGGTGGCCAGATTCGGTCAATAAGATCTTCCCTTC 365
Query 363 TTCAATGCAGACGAGCTCCAAAGAAGAAGCCAGGAAGCTGAGGATGCTTCTTTCGCAGTT 422
||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 366 TTCAATGCAGACGAGCTCCAAGGAAGAGGCCAAGAAGCTGAGGATGCTTCTTTCGCAGTT 425
Query 423 CATGAAGCCCGAGGCTTTGAGGAGGTATGTTGGTGTTATGGATGAGATTGCTCAAAGACA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CATGAAGCCCGAGGCTTTGAGGAGGTATGTTGGTGTTATGGATGAGATTGCTCAAAGACA 485
Query 483 TTTTGAGACGGAATGGGCCAATCAAGATCAAGTCATTGTCTTCCCTCTTACCAAAAAGTT 542
|||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||
Sbjct 486 TTTTGAGACGGAATGGGCCAATCATGATCAACTCATTGTCTTCCCTCTCACCAAAAAGTT 545
Query 543 CACGTTTTCAATAGCATGCCGTTCGTTCCTGAGCATGGAAGATCCCGCAAGAGTAAGGCA 602
||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 546 CACGTTTTCAATAGCATGCCGTTCGTTTCTGAGCATGGACGACCCCGCAAGGGTAAGGCA 605
Query 603 ACTAGAAGAGCAATTCAATACGGTAGCGGTAGGGATCTTCTCAATCCCAATAGACTTGCC 662
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 ACTAGAAGAGCAATTCAATACAGTAGCGGTAGGGATCTTCTCAATCCCAATAGACTTGCC 665
Query 663 AGGAACACGGTTTAACCGAGCCATCAAGGCGTCGAGGTTACTCAGAAAAGAGGTTTCCGC 722
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGGAACACGGTTTAACCGAGCTATCAAGGCGTCGAGGTTACTCAGAAAAGAGGTTTCCGC 725
Query 723 TATCGTAAGGCAGAGGAAAGAAGAGCTCAAAGCCGGGAAAGCATTAGAGGAGCACGACAT 782
|||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 726 GATCGTAAGGCAGAGGAAAGAAGAGCTCAAATCCGGGAAAGCATTAGAGGAACATGACAT 785
Query 783 ATTATCTCACATGTTGATGAATATAGGAGAGACCAAAGACGAGGATTTGGCTGATAAAAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 ATTATCTCACATGTTGATGAATATAGGAGAGACCAAAGACGAGGATTTGGCTGATAAAAT 845
Query 843 TATTGGATTGTTAATCGGAGGACATGACACAGCTAGTATCGTATGCACTTTCGTTGTCAA 902
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 846 TATTGGATTGTTAATCGGAGGACATGACACAGCCAGTATTGTATGCACTTTTGTTGTCAA 905
Query 903 TTATCTTGCTGAATTCCCTCATGTCTACCAACGTGTGCTACAAGAGCaaaaggagatact 962
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TTATCTTGCTGAATTCTCTCATGTCTACCAACGTGTGCTACAAGAGCAAAAGGAGATACT 965
Query 963 aaaggagaaa-aaagaaaaggaaggattaaggtgggaggacattgagaaaaTGAGATATT 1021
||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AAATGA-AAAGAAAGAAAAAGAAGGATTAAGGTGGGAGGACATTGAGAAAATGAGATATT 1024
Query 1022 CATGGAATGTTGCATGTGAAGTGATGAGAATTGTTCCTCCTCTTTCTGGCACTTTTCGTG 1081
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1025 CATGGAATGTTGCATGTGAAGTGATGAGAATTGTTCCTCCTCTTCCTGGCACTTTTCGTG 1084
Query 1082 AGGCCATTGATCACTTCTCTTTTAAGGGTTTTTACATTCCCAAAGGATGGAAGTTATATT 1141
||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1085 AGGCCATCGATCACATCTCTTTTAAAGGTTTTTACATCCCCAAAGGATGGAAGTTATATT 1144
Query 1142 GGAGTGCCACCGCGACACATATGAATCCAGACTACTTCCCAGAACCAGAGAGATTTGAGC 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GGAGTGCCACCGCGACACATATGAATCCAGACTACTTCCCAGAACCAGAGAGATTTGAGC 1204
Query 1202 CAAACCG-TTTCGAAGGAAGTGGTCCGAAGCCTTATACCTATGTTCCATTTGGAGGAGGA 1260
|||| || ||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1205 CAAAACGATTT-GAAGGAAGTGGTCCGAAGGCTTATACATATGTTCCATTTGGAGGAGGA 1263
Query 1261 CCAAGAATGTGTCCAGGGAAAGAGTATGCTCGTCTAGAGATTCTTATATTCATGCACAAT 1320
||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 1264 CCAAGGATGTGTCCAGGGAGAGAGTATGCTCGTCTAGAAATTCTTATATTTATGCACAAT 1323
Query 1321 CTTGTTAATAGATTTAAGTGGGAAAAAGTGTTTCCAAATGAAAATAAAATAGTTGTTGAT 1380
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1324 CTTGTTAAGAGATTTAAGTGGGAAAAAGTATTTCCAAAAGAAAATAAAATAGTGGTTGAT 1383
Query 1381 CCCTTACCAATACCAGACAAAGGTCTCCCTATAAGAATTTTTCCTCAATCTTGA 1434
|||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1384 CCCTTACCAATACCAGGTAAAGGTCTCCCTATAAGAATATTTCCTCAATCTTGA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5