BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36120.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493654 jgi|Araly1|493654|fgenesh2_kg.7__3087__AT5G36120.1 743 0.0
> Ahg493654 jgi|Araly1|493654|fgenesh2_kg.7__3087__AT5G36120.1
Length=663
Score = 743 bits (402), Expect = 0.0
Identities = 585/668 (88%), Gaps = 33/668 (5%)
Strand=Plus/Plus
Query 18 AAAAACAGAGCAGAGAGA-T-TGTGATGACGACAGTGACCACCAGCTTCGTCTCTTTCTC 75
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACAGAGCAGAGTGATTGTGTGATGACGACAGTGACCACCAGCTTCGTCTCTTTCTC 60
Query 76 GCCGGCATTGATGAT-TTTTCAGAAGAAATCACGACGATCCTCTCCAAATTTCCGCAATC 134
|||||| | || | | | ||||||||| |||||||||| ||| |||||||| ||||
Sbjct 61 GCCGGC---GCTGCTCCATGC-GAAGAAATCTCGACGATCCTTTCCCAATTTCCGAAATC 116
Query 135 GATCCACGTCTCTTCCCATAGTTTCAGCAACATTAAGCCACATAGAAGAAGCAGCCACAA 194
| ||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||
Sbjct 117 GCTCCACGTCTCTTCCCATAGTTTCAGCATCGTTAAGCCACATCGAAGAAGCAGACACAA 176
Query 195 CAACAAA--TC--T-----CATTCGACAGACGAATTCCATTTCGGAATCGTTGCGTAACA 245
||||||| || | ||||| |||||||||||| |||||||| |||||||||||||
Sbjct 177 CAACAAATCTCTATCCCAACATTCTACAGACGAATTCAATTTCGGATTCGTTGCGTAACA 236
Query 246 TTTCTCTAGCAGATTTAGATCCAGGAACAGCGAAGCTCGCTATTGGTATCTTAGGTCCAG 305
|| || |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 237 TTCCTTTAGCAGATTTAGATCCAGGAACTGCGAAGCTCGCAATTGGTATCTTAGGTCCAG 296
Query 306 CTTTATCAGCTTTTGGATTTCTATTCATTTTGAGAATCGTTATGTCTTGGTACCCGAAAC 365
|||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||
Sbjct 297 CTTTATCAGCTTTTGGGTTTCTATTCATCGTGAGAATTGTCATGTCTTGGTACCCGAAAC 356
Query 366 TTCCCGTTGACAAGTTTCCGTACGTTTTAGCTTACGCTCCGACAGAACCAATCCTTGTTC 425
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTCCTGTTGAGAAGTTTCCTTACGTTTTAGCTTACGCTCCGACAGAACCAATCCTTGTTC 416
Query 426 AGACAAGGAAAGTGATTCCACCACTTGCAGGTGTTGATGTTACTCCTGTGGTTTGGTTTG 485
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 417 AGACCAGGAAAGTGATTCCACCACTTGCAGGTGTTGATGTAACTCCTGTTGTTTGGTTTG 476
Query 486 GGCTTGTGAGTTTCCTTAGTGAGATTTTGGTTGGTCCTCAAGGACTTCTTGTTCTTGTTT 545
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 477 GACTTGTGAGTTTCCTTAGTGAGATTTTAGTTGGTCCTCAGGGACTTCTTGTTCTTGTTT 536
Query 546 CTCAACAACAAGTTAATTA-GCT--AAG-AATT-GAATC-ATTTT-G-T-TCT--CATTA 594
||||||||||||||| || | | || |||| | | ||||| | | | | | |||
Sbjct 537 CTCAACAACAAGTTAGCTAAGATTGAATCAATTTGTGCCTATTTTTGCTGTTTTTC-TTA 595
Query 595 TAGAGAAGTCTCCTTGTAGCATACAA--T---GTTCCTACATTACTCGCAAATATGATTG 649
||||||||||| ||||| ||||| || | ||||||||||||||| | |||||||||
Sbjct 596 TAGAGAAGTCTACTTGTGGCATATAACGTTATGTTCCTACATTACTCACTCATATGATTG 655
Query 650 TTTGGCTC 657
||||||||
Sbjct 656 TTTGGCTC 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5