BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36150.1
Length=2283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896878 jgi|Araly1|896878|Al_scaffold_0005_844 2283 0.0
Ahg916218 jgi|Araly1|916218|Al_scaffold_0008_969 1498 0.0
Ahg316749 jgi|Araly1|316749|fgenesh1_pm.C_scaffold_2001782 1439 0.0
> Ahg896878 jgi|Araly1|896878|Al_scaffold_0005_844
Length=2127
Score = 2283 bits (1236), Expect = 0.0
Identities = 1716/1949 (88%), Gaps = 27/1949 (1%)
Strand=Plus/Plus
Query 1 ATGTGGAGGCTGAGGATCGGAGCTAAGGCAGGAGATGACCCTCACTTGTGCACCACCAAC 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTGGAAGCTGAGGATCGGAGCTAAGGCAGGAGATGATCCTCACTTGTGCACCACCAAC 60
Query 61 AACTTCTTGGGAAGGCAGATATGGGAGTTTGATGCCAACGCAGGCTCTCCAGCGGAACTC 120
|||| | | |||||||||||||||||||||||| || | ||||||||||| | ||||||
Sbjct 61 AACTACCTCGGAAGGCAGATATGGGAGTTTGATACCCATGCAGGCTCTCCGGAAGAACTC 120
Query 121 TCTGAGGTTGATCAGGCTCGACAAAATTTCTCAAACAATAGGTCACAATACAAGGCTTGT 180
| ||||||||| |||||||||| |||||||| |||||||||||||||||||| ||| ||
Sbjct 121 TTTGAGGTTGAGCAGGCTCGACGGAATTTCTCCAACAATAGGTCACAATACAAAGCTAGT 180
Query 181 GCCGATCTCCTT-TGGCGTATGCAGTTTCTAAGGGAGAAGAATTTCGAGCAAAAGATTCC 239
|||||||| || |||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 181 GCCGATCT-GTTGTGGCGTATGCAGTTTCTAAGGGAGAAAAAGTTCGAACAAAATATTCC 239
Query 240 ACGAGTGAGAATAGAGGATGCCAAGAAAATAACATTTGAAGACGCAAAAAATACACTGAG 299
|| |||| || | | |||||| |||||||||||| |||||| || || | |||||||
Sbjct 240 GCGGGTGA-AA-ATA-GATGCCGAGAAAATAACATATGAAGAAGCGAATACGGCACTGAG 296
Query 300 AAGAGGAATACATTATATGGCAGCGTTGCAATCTGATGATGGACATTGGCCTTCCGAAAA 359
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 297 AAGAGGTATACACTATATGGCAGCGTTGCAGTCTGATGATGGACATTGGCCTGCTGAAAA 356
Query 360 CGCTGGTTGCATTTTCTTCAATGCCCCCTTTGTTATATGTTTGTATATCACTGGCCATCT 419
| |||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 357 CTCTGGTTGCATGTTCTTTAACGCTCCCTTTGTCATATGTTTGTATATCACTGGCCATCT 416
Query 420 GGATA-AAGTTTTCTCTGAAGAGCATCGGAAAGAGATGTTGCGTTACATGTACAACCATC 478
|||| || | |||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 417 AGATACAA-TCTTCTCTCAAGAGCATCGCAAAGAGATGTTGCGTTATATGTACAACCATC 475
Query 479 AGAACGACGATGGTGGATGGGGAATAGACGTAGAAAGCCATAGTTTTATGTTTTGCACGG 538
|||| ||||||||||| ||||| ||||||| ||||||||||||| ||||| |||||||
Sbjct 476 AGAATGACGATGGTGGGTGGGGGCTAGACGTCGAAAGCCATAGTTCAATGTTCTGCACGG 535
Query 539 TCATCAACTACATCTGCCTACGAATCT-TCGG-AGTAGATCCCGATCATGATGGT---GA 593
|||||||||| |||||||||||||| | | || ||| ||||| ||| |||||||| |
Sbjct 536 TCATCAACTATATCTGCCTACGAAT-TAT-GGAAGTGGATCCTGATTATGATGGTAAAAA 593
Query 594 AAGTGCTTGTGCAAGGGCTCGTAAATGGATCATTGACCACGGTGGCGCTACCTATACGCC 653
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 594 AAATGCTTGTGCAAGGGCTCGTAAATGGATCATTGACCACGGTGGTGCTACCTATACACC 653
Query 654 ATTATTTGGAAAAGCCTGGCTTTCGGTTCTTGGAGTATATGAATGGTCTGGTTGCAAACC 713
||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 654 ATTGTTTGGAAAAGCTTGCCTTTCGGTTCTTGGAGTGTATGAATGGTCTGGTTGCAAACC 713
Query 714 CATACCCCCAGAGTTCTGGTTTTTTCCTTCCTATTTTCCTATTAATGGAGGCACTCTCTG 773
||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| | ||
Sbjct 714 TATACCACCAGAGTTCTGGTTATTTCCTTCTTATTTCCCTATTAATGGAGGCACTGTTTG 773
Query 774 GATATATTTACGGGATACTTTCATGGCAATGTCCTATTTGTATGGTAAAAAATTTGTTGC 833
||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 774 GATTTATTTGCGTGATACTTTCATGGCACTGTCCTATTTGTATGGTAAAAAATTTGTAGC 833
Query 834 TAAACCAACACCTCTCATTCTACAACTTCGTGAAGAACTTTATCCTCAACCTTATGCTGA 893
|| |||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||
Sbjct 834 TACTCCAACACCCCTCATTCTACAGCTCCGAGAAGAGCTTTATCCTCAGGCTTATGCTGA 893
Query 894 AATTGTTTGGAGCCAAGCTCGCAGTCGATGTGCGAA-GGAAGATCTATATTATCCACAAT 952
|||||||||||| |||||||| | |||||| || || |||||||||||| ||||||||||
Sbjct 894 AATTGTTTGGAGTCAAGCTCGGAATCGATGCGC-AATGGAAGATCTATACTATCCACAAT 952
Query 953 CAT-TGGTACAAGACTTGTTTTGGAAACTTGTTCACATGTTTTCGGAGAATATCTTAAAT 1011
||| || |||||||||||||||||||| |||||| ||||| || |||||||||||||||
Sbjct 953 CATATG-TACAAGACTTGTTTTGGAAAAGTGTTCATATGTTCTCTGAGAATATCTTAAAT 1011
Query 1012 CGATGGCCTTTCAACAAGCTCATTAGAGAAAAAGCTATTCGAACGGCAATGGAACTCATT 1071
|||||||||||||| |||||||| ||||| | |||||| |||| |||||||||||| ||
Sbjct 1012 CGATGGCCTTTCAAGAAGCTCATAAGAGAGAGAGCTATGCGAAGGGCAATGGAACTTATC 1071
Query 1072 CACTACCATGACGAAGCCACCCGGTACATTACAGGTGGAGCAGTGCCAAAGGTGTTTCAT 1131
|| ||| ||||||||||| ||| |||||||| ||||||| ||||||||||||||||||
Sbjct 1072 CATTACTATGACGAAGCCTCCCAATACATTACCGGTGGAGGTGTGCCAAAGGTGTTTCAT 1131
Query 1132 ATGCTTGCTTGTTGGGTTGAAGATCCAGAGAGTGATTATTTTAAAAAACATCTTGCGCGA 1191
|||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 1132 ATGCTTGCTTGTTGGGCTGAGGATCCCGAGAGTGAATATTTTAAAAAACATCTTGCTTGT 1191
Query 1192 GTCTCTCATTTCATATGGATTGCGGAGGACGGCTTGAAAATCCAGACTTTTGGTAGCCAA 1251
|||||| || |||||||||| ||||||||||| | |||||||||| |||||| ||||||
Sbjct 1192 GTCTCTGGTTACATATGGATTTCGGAGGACGGCCTAAAAATCCAGAGTTTTGGCAGCCAA 1251
Query 1252 ATATGGGATACAGCCTTCGTT-CTCCAAGTCATGTTAGCGGCTGATGTTGACGATGAGAT 1310
|||||||||||| |||| ||| || |||||||||||||| |||||| |||| ||||||||
Sbjct 1252 ATATGGGATACAACCTT-GTTGCTACAAGTCATGTTAGCCGCTGATATTGATGATGAGAT 1310
Query 1311 AAGGCCAACGCTCATAAAGGGATACTCTTACTTGAGGAAATCCCAATTTACAGAGAATCC 1370
||| |||||||||||||||||||||||| |||||||||||| || ||| |||||||||
Sbjct 1311 AAGATCAACGCTCATAAAGGGATACTCTTTCTTGAGGAAATCTCAGCTTATAGAGAATCC 1370
Query 1371 TCCCGGTGACTATATCAATATGTTTAGAGACATATCCAAAGGAGGGTGGGGCTATTCAGA 1430
||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| | ||| ||
Sbjct 1371 TCCTGGTGACTATATCAAAATGTTCAGAGACATATCAAAAGGAGGATGGGGTTTTTCGGA 1430
Query 1431 CAAAGATCAAGGATGGCCTGTTTCAGATTGTATTTCTGAGAGTTTAGAGTGCTGCCTGAT 1490
|||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1431 CAAAGATCAAGGATGGCCAGCTTCAGATTGTACTTCCGAGAGTTTAGAGTGCTGCCTGAT 1490
Query 1491 CTTTGAGAGTATGTCATCCGAATT-CATTGGTGAGAAAATGGAAGTGGAGAGGCTTTATG 1549
||||||||| ||| | || |||| |||||||||||||||||| ||||||||||||||||
Sbjct 1491 CTTTGAGAGCATGCCGTCT-AATTTCATTGGTGAGAAAATGGACGTGGAGAGGCTTTATG 1549
Query 1550 ATGCCGTCAATATGCTTCTCTATATGCAGAGCAGAAATGGAGGGATATCTATATGGGAAG 1609
|||| ||||||||| |||||||| ||||||||| ||||||||| ||| || ||||||| |
Sbjct 1550 ATGCAGTCAATATGATTCTCTATTTGCAGAGCAAAAATGGAGGTATAGCTGTATGGGA-G 1608
Query 1610 C-AGCGAGTGGGAAAAAATGGCTAGAGTGGCTTAGTCCCATAGAGTTTATTGAAGACACT 1668
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1609 CCAGCGAGTGGGAAAAAATGGCTAGAGTGGCTTAGCCCCATAGAGTTTATGGAAGATACA 1668
Query 1669 ATCCTCGAGCATGAGTATCTAGAATGCACGGGGTCAGCGATAGTGGTGTTGGCACGCTTC 1728
|| |||||||||||||||||||||||||||||||||||| |||| |||||| | |||| |
Sbjct 1669 ATACTCGAGCATGAGTATCTAGAATGCACGGGGTCAGCGGTAGTAGTGTTGACTCGCTAC 1728
Query 1729 ATGAAACAGTTTCCAGGGCATAGAACAGAAGAAGTCAAAAA-ATTTATAACAAAGGGAGT 1787
|||||||||||||| |||||||||||| ||||| | | ||| ||||||| |||||| |||
Sbjct 1729 ATGAAACAGTTTCCCGGGCATAGAACAAAAGAAAT-AGAAACATTTATAGCAAAGGCAGT 1787
Query 1788 GAAATACATAGAAAGCTTACAAATTGCGGATGGTTCGTGGTACGGAAACTGGGGAATATG 1847
|||||||||||||| || |||| ||||||||||||||||| ||||| |||||| | ||
Sbjct 1788 AAAATACATAGAAAGTTTGCAAACGGCGGATGGTTCGTGGTATGGAAATTGGGGAGTGTG 1847
Query 1848 TTTTATATATGGGACTTTCTTTGCTGTCCGAGGTTTAGTGGCCGCGGGAAACACTTACGA 1907
|| || |||| ||| |||||||||||||||||||||||||| ||||| || |||||| |
Sbjct 1848 CTTCATCTATGCGACATTCTTTGCTGTCCGAGGTTTAGTGGCTGCGGGCAAGACTTACCA 1907
Query 1908 TAACTGTGAGGCAATCCGTAGAGC-AGTT 1935
|| || |||| | ||||||||||| ||||
Sbjct 1908 TAGCTCTGAGCCGATCCGTAGAGCTAGTT 1936
Score = 241 bits (130), Expect = 2e-62
Identities = 171/191 (90%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1981 AGTTTTCTTTCTTGCCCCAACAA-AAATTATATTCCTTTGGAGGGGAACAAGACCGATGT 2039
|||||||| ||||| |||||||| ||| |||||||| ||||| |||||||||||| ||||
Sbjct 1933 AGTTTTCTCTCTTGTCCCAACAAGAAA-TATATTCCATTGGAAGGGAACAAGACCAATGT 1991
Query 2040 GGTGAATACAGGACAAGCATTGATGGTTCTAATAATGGGTGGTCAGATGGATAGAGATCC 2099
||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1992 GGTAAATACGGGACAAGCAATGATGGTTCTAATAATGGGTGGTCAGATGGAGAGAGACCC 2051
Query 2100 TTTACCGGTTCACCGCGCTGCAAAAGTATTAATCAATTCACAAATGGATAACGGTGATTT 2159
|||||| ||||| || ||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 2052 TTTACCAGTTCATCGTGCTGCGAAAGTTTTAATTAATTCGCAAATGGATAACGGTGATTT 2111
Query 2160 TCCACAGCAGG 2170
|||||| ||||
Sbjct 2112 TCCACAACAGG 2122
> Ahg916218 jgi|Araly1|916218|Al_scaffold_0008_969
Length=2301
Score = 1498 bits (811), Expect = 0.0
Identities = 1850/2337 (79%), Gaps = 129/2337 (6%)
Strand=Plus/Plus
Query 1 ATGTGGAGGCTGAGGA-TCGGAGCTAAGGCAGGAGATGACCCTCACTTGTGCACCACCAA 59
||||||||||||| || | ||| | ||||| ||||| || ||||||||| |||||||||
Sbjct 1 ATGTGGAGGCTGA-GACTTGGACCGAAGGCCGGAGAAGATACTCACTTGTTCACCACCAA 59
Query 60 CAACT-T-CTTGGGAAGGCAGATATGGGAGTTTGATGCCAACGCAGGCTCTCCAGCGGAA 117
||||| | | ||| |||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 60 CAACTATGC-CGGG-AGGCAGATTTGGGAGTTCGATGCCAACGCAGGCTCTCCAGAGGAA 117
Query 118 CTCT-CTGAGGTTGATCAGGCTCGACAAAATTTCTCAAACAATAGGTCACAATACAAGGC 176
|| | | ||||| || | ||||| || ||||| |||||||| |||||| | |||| |
Sbjct 118 CT-TGCCGAGGTAGAGGATGCTCGTCAGAATTTTTCAAACAACCGGTCACGTTTCAAGAC 176
Query 177 TTGTGCCGATCTCCTTTGGCGTATGCAGTTTCTAAGGGAGAAGAATTTCGAGCAAAAGAT 236
|||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 177 CAGTGCAGATCTCCTATGGCGGATGCAGTTTCTCAGGGAGAAGAAATTCGAGCAAAAGAT 236
Query 237 TCCACGAGTGAGAATAGAGGATGCCAAGAAAATAACA-TTTGAAGACGCAAAAAATACAC 295
||||||||||| | |||||||||| | |||||||| | | ||||| ||||| | ||
Sbjct 237 TCCACGAGTGATAGTAGAGGATGCGAGGAAAATAA-AGTACGAAGATGCAAAGACCGCAT 295
Query 296 TGAGAAGAGGAATACAT-TATATGGCAGCGTTGCAATCTGATGATGGACATTGGCCTTCC 354
|||||||||| ||| | ||| | |||| ||||| ||||||||||||| ||||| |
Sbjct 296 TGAGAAGAGGGTTAC-TCTATTTCACAGCCTTGCAGGCTGATGATGGACACTGGCCAGCT 354
Query 355 GAAAACGCTGGTTGC-ATTTTCTTCAATG-CCC-CCTTTGTT-ATATGTTTGTATATCAC 410
|||||| |||| | | | |||| | | | ||| ||||| || ||||| |||| |||||
Sbjct 355 GAAAACTCTGG-TCCAAATTTC-T--ACGCCCCACCTTTTTTGATATGCCTGTACATCAC 410
Query 411 TGGCCATCTGGATAAAGTTTTCTCTGAAGAGCATCG-GAAAGAGATGTTGCGTTACATGT 469
||| ||||||| ||| | ||| || |||||| | |||||| | | ||| |||| |
Sbjct 411 TGGAAATCTGGAGAAAATCTTCACTCCCGAGCAT-GTTAAAGAGTTACTACGTCACATCT 469
Query 470 ACAACCAT-CAGAACGACGATGGTGGATGGGGAATAGACGTAGAAAGCCATAGTTTTATG 528
|||| ||| |||||||| |||||||| |||||| || ||||||||||||| ||| |||||
Sbjct 470 ACAA-CATGCAGAACGAAGATGGTGGGTGGGGATTACACGTAGAAAGCCACAGTGTTATG 528
Query 529 TTTTGCACGGTCATCAACTACATCTGCCTACGAATCT-TCGGAGTAG-ATCCCGATCATG 586
|| || || |||||||||||||| || || |||| | | || | || | || | |||||
Sbjct 529 TTCTGTACAGTCATCAACTACATTTGTTTAAGAAT-TGTGGGCGAAGAAGCCAG-TCATG 586
Query 587 ATGGT----GAAAGTGCTTGTGCAAGGGCTCGTAAATGGATCATTGACCACGGTGGCGCT 642
||| | |||| || |||||||| ||||| ||| |||||||| ||||| ||||| |||
Sbjct 587 ATGATCAAGGAAA-TGGTTGTGCAAAGGCTCATAAGTGGATCATGGACCATGGTGGTGCT 645
Query 643 ACCTATACGCCATT-ATTTGGAAAAGCCTGGCTTTCGGTTCTTGGAGTATATGAATGGTC 701
||||| ||||| || | | |||||||| | || |||||||||||||| ||||| |||||
Sbjct 646 ACCTACACGCCCTTGA-TAGGAAAAGCGTTACTATCGGTTCTTGGAGTGTATGATTGGTC 704
Query 702 TGGTTGCAAACCCATACCCCCAGAGTTCTGGTTTTTTCCTTCCTATTTTCCTATTAATGG 761
||| ||||| || ||||| |||||||||||||| |||| || | ||||||| |||||||
Sbjct 705 TGGATGCAATCCTATACCTCCAGAGTTCTGGTTGCTTCCGTCTTCTTTTCCTGTTAATGG 764
Query 762 A-G--GCACTCTCTGGATATATTTACGGGATACTTTCATGGCAATGTCCTATTTGTATGG 818
| | | ||||||||||| ||||||||||||||||| |||| |||| || ||||||||
Sbjct 765 AGGTTGGACTCTCTGGATTTATTTACGGGATACTTTTATGGGGTTGTCATACTTGTATGG 824
Query 819 TAAAAAATTTGTTGCTAAAC-CAACACCTCTCATTCTACAA-CTTCGTGAAGAACTTTAT 876
|||||||||||| ||| | |||||||||||||||| ||| || || ||||| ||||||
Sbjct 825 TAAAAAATTTGTGGCT-GCCTCAACACCTCTCATTCT-CAAGCTCCGAGAAGAGCTTTAT 882
Query 877 CCTCAACCTTATGCTGAAATTGTTTGGAGC-CAAGCTCGCAGTCGATGTGCGAAGGAAGA 935
|| | |||||||| |||| ||||| | ||| | || | |||||||| ||||||||
Sbjct 883 CCGGAGCCTTATGCAAAAATCAATTGGA-CGCAAACACGAAACCGATGTGCAAAGGAAGA 941
Query 936 TCTATATTATCCACAATCATTGGTACAAGACTTGTTTTGGAAACTTGTTCACATGTTTTC 995
||| || ||||||| ||||| ||||||| |||||||||||| |||||||||||| ||
Sbjct 942 TCTCTACTATCCACGCTCATTTTTACAAGATTTGTTTTGGAAAAGTGTTCACATGTTCTC 1001
Query 996 GGAGAATATCTTAAATCGATGGCCTTTCAACAAGCTCATTAGAGAAAAAGCTATTCGAAC 1055
||||| |||| || ||||||||||||| ||||| || || ||||| | |||| ||||| |
Sbjct 1002 GGAGAGTATCCTAGATCGATGGCCTTTAAACAAACTAATAAGAGAGAGAGCTCTTCGATC 1061
Query 1056 GGCAATGGAACTCATTCACTACCATGACGAAGCCACCCGGTACATTACAGGTGGA-GCAG 1114
| ||| |||||||||||| ||||| ||| ||||| | || |||||||| ||| ||
Sbjct 1062 CACTATGTCACTCATTCACTATCATGATGAATCCACCAGATATATTACAGGCGGATGC-C 1120
Query 1115 TGCCAAAGGTGTTTCATATGCTTGCTTGTTGGGTTGAAGATCCAGAGAGTGATTATTTTA 1174
||||||||| |||||||||||||| |||||| | ||||| || ||||||||||||||||
Sbjct 1121 TGCCAAAGGCCTTTCATATGCTTGCATGTTGGATAGAAGACCCTGAGAGTGATTATTTTA 1180
Query 1175 AAAAACATCTTGCGCGAGTCTCTC-ATTTCATATGGATTG-CGGAGGACGGCTTGAAAAT 1232
||||||||||||| ||||| || | | | ||||||||||| || |||| ||| |||||||
Sbjct 1181 AAAAACATCTTGCTCGAGT-TCGCGAATACATATGGATTGGCG-AGGATGGCCTGAAAAT 1238
Query 1233 CCAGACTTTTGGTAGCCAAATATGGGATACAGCCTT--CGTTCTCCAAGTCATGTTAG-C 1289
||| |||||||||||||| ||||||||||| |||| || || || ||| |||||| |
Sbjct 1239 TCAGTCTTTTGGTAGCCAATTATGGGATACATCCTTATCG--CTACATGTCTTGTTAGAC 1296
Query 1290 GGC-T-GATGT---TGACG---ATGAGATAAGGCCAACGCTCAT-AAAGGGATACTC-TT 1339
|| | |||| ||| | ||||||| || |||||||| | ||||| ||| | ||
Sbjct 1297 GGTATTGATGAGCATGATGTTGATGAGATTAGAACAACGCTCGTTAAAGG-ATA-TGATT 1354
Query 1340 ACTTGAGGAAATCCCAATTTACAGAGAATCCTCCCGGTGA-CTA-TATC-AATATGTTTA 1396
|||||| |||||| ||| |||||||||| |||| |||||| | | | || || ||||||
Sbjct 1355 ACTTGAAGAAATCTCAAATTACAGAGAACCCTCGCGGTGATC-ACT-TCCAA-ATGTTTC 1411
Query 1397 GAGACATATCCAAA-GGAGGGTGGG-GCTATTCAGA-CAAAGATCAAGGATGGCCTGTTT 1453
| |||| | |||| || || ||| | | |||||| ||| |||||||||||||||||||
Sbjct 1412 GTCACAT-TACAAAAGGTGGATGGACGTT-TTCAGATCAA-GATCAAGGATGGCCTGTTT 1468
Query 1454 CAGATTGTATTTCTGAGAGTTTAGAGTGCTGCCTGAT-CTTTGAGAG-TATGTCATCCGA 1511
||||||||| | |||| ||||||||||| || || || ||| ||||| | || |||| ||
Sbjct 1469 CAGATTGTACTGCTGAAAGTTTAGAGTGTTGTCT-ATTCTTCGAGAGCT-TGCCATCAGA 1526
Query 1512 ATTCATTGGTGAGAAAA-TGGAAGTGGAGAGGCTTTATGATGCCGTCAAT-ATGCTTCTC 1569
| || || || |||| |||| |||| || || |||||||| || || || ||||||
Sbjct 1527 GCTAATCGG-GAAAAAAATGGATGTGGGGAAACTGTATGATGCTGTTGATTAT-CTTCTC 1584
Query 1570 TATATGCAGAGCAGA-AATGGAGGGATATCTAT-ATGGGAAGCAGC-GAGTGGGAAAAAA 1626
||| ||||||| || |||||||| ||| | | |||| || | | || |||||||
Sbjct 1585 TATCTGCAGAGT-GATAATGGAGGCATAGC-AGCATGGCAACCGGTTGA-TGGGAAAGCC 1641
Query 1627 TGGCTAGAGTGGCTTAGTCCCA-TAGAGTTTATTGAAGACACTATCCTCGAGCATGAGTA 1685
||| |||||||||||||||| | | |||||| |||||||| | | ||||| |||||||
Sbjct 1642 TGGTTAGAGTGGCTTAGTCC-AGTGGAGTTTCTTGAAGACGCGGTGGTCGAGTATGAGTA 1700
Query 1686 TCTAGAATGCACGGGGTCAGCGATAGTGGTGTTGGC-ACGCTT-CATGAAACAGTTTCCA 1743
| ||||||| |||||||||||||| || | |||||| | | || | | ||||||||||||
Sbjct 1701 TGTAGAATGTACGGGGTCAGCGATTGTCGCGTTGGCTAAGTTTAC-T-AAACAGTTTCCA 1758
Query 1744 GGGCATAGAA-CAGAAGAAGTCAAAAAATTTATAACAAAGGGAGTGAAA-TACATAGAA- 1800
| | ||| || | | ||| || ||| | |||||||||||||| | ||| ||||| |||
Sbjct 1759 GAGTATAAAAAC-GCAGAGGTTAAACAGTTTATAACAAAGGGTGC-AAAGTACATTGAAG 1816
Query 1801 AGCTTACAAATTGCGGATGGTTCGTGGTACGGAAACTGGGGAATATGTTTTATATATGGG 1860
| | | |||| | ||||||||| ||||||||||| |||||| | |||||||||||||||
Sbjct 1817 A-CATGCAAACGGTGGATGGTTCATGGTACGGAAATTGGGGAGTGTGTTTTATATATGGG 1875
Query 1861 ACTTTCTTTGCTGTCCGAGGT-TTAGTGGCCGC-GGGAAACACTTACGATAACTGTGAGG 1918
|| |||||||| || ||||| || ||||| || ||||| ||||||| ||||||||| |
Sbjct 1876 ACCTTCTTTGCGGTAAGAGGTCTT-GTGGCTGCTGGGAAG-ACTTACGGTAACTGTGAAG 1933
Query 1919 CAATCCGTAGAGCAGTTCGATTCCTTCTTGATATACAAAA-CGGTGAAGGCGGTTGGGGA 1977
|||| |||| ||||||||| || ||||| || | |||||| | | || || || ||||||
Sbjct 1934 CAATTCGTAAAGCAGTTCGTTTTCTTCTCGACACACAAAATCTG-GAGGGTGGATGGGGA 1992
Query 1978 GAGAGTTTTCTTTCTTGCCCCAA-CAAAA-ATTATATTCCTTTGGAGGGGAACAAG-ACC 2034
||||| ||||| ||||| || || ||| | || | | ||||||| | || |||| | ||
Sbjct 1993 GAGAGCTTTCTCTCTTGTCC-AAGCAAGATAT-ACACTCCTTTGAAAGGAAACA-GCACA 2049
Query 2035 GATGTGGTG-AATACAGGACAAGCA-TTGATGGTTCTAATAATGGGTGGTCAGATGGATA 2092
|||||||| || |||||||||||| || || || ||||| |||| || ||| ||||| |
Sbjct 2050 AATGTGGTGCAA-ACAGGACAAGCACTT-ATAGTGCTAATTATGGCTGATCAAATGGAGA 2107
Query 2093 GAGATCCTTTACCGGTTCACCGCGCTGCAAAAGTATTAATCAATTCACAAATGGATAACG 2152
||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||||| |
Sbjct 2108 GAGATCCTTTACCGGTTCATCGCGCTGCCAAAGTGTTGATCAATTCACAGTTGGATAATG 2167
Query 2153 GTGATTTTCCACAGCAGGAAATAAGGGGT--GTTTACAAAATGAA-TGTGATGCTAAATT 2209
| ||||||||||| |||||||||| ||| ||| || | ||| ||||||||| |||
Sbjct 2168 GCGATTTTCCACAACAGGAAATAATGGGAACGTT--CATGA-GAACTGTGATGCTCCATT 2224
Query 2210 TTCCAACCTTTAGAAACTCTTTCACTCTTTGGGCACTAACACACTACAC-CAAGGCT 2265
||||||||| ||| ||| | ||| |||||||||| || ||||| ||||| || ||||
Sbjct 2225 TTCCAACCTATAGGAACACGTTCTCTCTTTGGGCTCTCACACATTACACACA-GGCT 2280
> Ahg316749 jgi|Araly1|316749|fgenesh1_pm.C_scaffold_2001782
Length=2256
Score = 1439 bits (779), Expect = 0.0
Identities = 1825/2316 (79%), Gaps = 128/2316 (6%)
Strand=Plus/Plus
Query 1 ATGTGGAGGCTGAGGATCGGAGCT-AAGGCAGGAGATGACCCTCACTTGTGCACCACCAA 59
|||||||| || || || | |||| || || ||||| | |||||||| ||| |||||
Sbjct 1 ATGTGGAGACTAAGAATTGCAGCTGAA-GCTGGAGACAAGAATCACTTGTTCACAACCAA 59
Query 60 CAACTTCTTG--GGAAGGCAGATATGGGAGTTTGATGCCAACGCAGGCTCTCCAGCGGAA 117
| | || || || || ||||| ||||| |||||||| || |||||||| || | ||||
Sbjct 60 C-AGTT-ATGCCGGTAGACAGATTTGGGAATTTGATGCTAAGGCAGGCTCGCCTGAGGAA 117
Query 118 CTCTCTGAGGTTGATCAGGCTCGACAAAATTTCTCAAACAATAGGTCACAATACAAGGCT 177
| |||| || || ||| |||||| || ||||||| |||| | | | | |||| ||
Sbjct 118 TTAGCTGAAGTCAATAAGGTTCGACAGAAGTTCTCAAGCAATCCGCCTCGTTTCAAGTCT 177
Query 178 TGTGCCGATCTCCTTTGGCGTATGCAGTTTCTAAGGGAGAAGAATTTCGAGCAAAAGATT 237
|||| ||||| |||||||| |||||||||||||||||||||| ||| ||||| ||||||
Sbjct 178 AGTGCTGATCTACTTTGGCGCATGCAGTTTCTAAGGGAGAAGAGTTTTGAGCAGAAGATT 237
Query 238 CCACGAGTGAGAATAGAGGATGCCA-AGAAAATAACATTTGAAGACGCAAAAAAT-ACAC 295
|| ||||||| |||||| |||| | |||| ||||||| ||||||||| || || |||
Sbjct 238 CCGCGAGTGATAATAGATGATG-AACAGAAGATAACATATGAAGACGC-CAAGATGGCAC 295
Query 296 TGAGAAGAGGAATACAT-TATATGGCAGCGTTGCAATCTGATGATGGACATTGGCCTTCC 354
| | |||||| |||| | ||| | || || |||||| | ||||||||||| |||||| |
Sbjct 296 TTAAAAGAGGGATAC-TCTATTTTGCGGCCTTGCAAGCCGATGATGGACACTGGCCTGCT 354
Query 355 GAAAACGCTGGTTGCATTTTCTTC-AATGCCCCCTTTGTTATATGTTTGTATATCACTGG 413
||||| ||||| | | |||||| || || |||||||| ||| | ||||||||||||||
Sbjct 355 GAAAATTCTGGTCCCCTGTTCTTCGAA-GCTCCCTTTGTCATAAGCTTGTATATCACTGG 413
Query 414 CCATCTGGATAAAGTTTTCTCTGAAGAGCATCGGAAAGAGATGTTGCGTTACATGTACAA 473
|||||||||||| | |||||| |||||||||| |||||| || ||||||||||||||||
Sbjct 414 GCATCTGGATAAAATCTTCTCTCAAGAGCATCGCAAAGAGCTGATGCGTTACATGTACAA 473
Query 474 CCATCAGAACGACGATGGTGGATGGGGAATAGACGTAGAAAGCCATAGTTTTATGTTT-T 532
|||||||||||| ||||||||||||||| || | || ||| |||| ||| || || || |
Sbjct 474 CCATCAGAACGATGATGGTGGATGGGGATTACATGTGGAAGGCCACAGTGTT-TGGTTCT 532
Query 533 GCACGGTCATCAACTACATCTGCCTACGAATCTTCGG-AGTAGATCCCGATCATGATGGT 591
| ||||| ||||||||||| || ||| |||| || || | |||| || || || ||
Sbjct 533 GTACGGTTATCAACTACATATGTCTAAGAATTTTTGGGA-TAGAGCCTGACCAAGA---- 587
Query 592 GAAAGTGCTTGTGCAAGGGCTCGTAAA-TGGATCATTGACCACGGTGGCGCTACCTATAC 650
||| || ||||||||||||||| ||| |||||| | ||||||||||| ||||| |||||
Sbjct 588 -AAA-TGTTTGTGCAAGGGCTCG-AAAGTGGATCCTCGACCACGGTGGTGCTACTTATAC 644
Query 651 GCCATT-ATTTGGAAAAGCCT-GGCTTTCGGTTCTTGGAGTATATGAATGGTCTGGTTGC 708
|| || || ||||| | | ||||||||||||||||||| ||||| ||||||||||||
Sbjct 645 ACCTTTGATC-GGAAA-GATTTGGCTTTCGGTTCTTGGAGTGTATGATTGGTCTGGTTGC 702
Query 709 AAACCCATACCCCCAGAGTTCTGGTTTTTTCCTTCCTATTTTCCTATTAATGGAGGCACT 768
||||||||||| || ||||| ||| | | ||||| | || |||| | ||||||||||||
Sbjct 703 AAACCCATACCACCGGAGTTTTGGATGCTCCCTTCTTCTTCTCCTGTCAATGGAGGCACT 762
Query 769 CTCTGGATATATTTACGGGATACTTTCATGGCAATGTCCTATTTGTATGGTAAAAAATTT 828
|| ||||| ||||| ||||| | ||| ||||| |||| || |||||||| |||||||||
Sbjct 763 CTATGGATTTATTTCCGGGACATTTTTATGGCTGTGTCATACTTGTATGGCAAAAAATTT 822
Query 829 GTTGCTAAACCAACACCTCTCATT-CTACAACTTCGTGAAGAACTTTATCCTCAACCTTA 887
|| ||||| |||||||||| ||| | ||| || || ||||| ||||||||||| | |||
Sbjct 823 GTCACTAAAACAACACCTCTAATTGC-ACAGCTCCGGGAAGAGCTTTATCCTCAGCGTTA 881
Query 888 T-GCTGAAATTGTTTGGAGCCAAGCTCGC-AGTCGATGTGCGAAGGAAGATCTATATTAT 945
| || |||||| |||||||||||||||| | | ||| || |||||||||||||| |||
Sbjct 882 TAGCA-AAATTGATTGGAGCCAAGCTCGCCAA-CAATGCGCAAAGGAAGATCTATACTAT 939
Query 946 CCACAATCATTGGTACAAGACTTGTTTTGGAAACTTGTTCACATGTTTTCGGAGAATATC 1005
||||||||||| |||||| |||||||||||| | |||||| ||||| || |||||| ||
Sbjct 940 CCACAATCATTTGTACAAAACTTGTTTTGGAGAGGTGTTCATATGTTGTCAGAGAATGTC 999
Query 1006 TTAAATC-GATGGCCTTTCAACAAGCTCATTAGAGAAAAAGCTATTCG-AACGGCAATGG 1063
|| |||| | |||||||||||||| ||||| ||| ||| ||| | || || ||||||
Sbjct 1000 TTGAATCAG-TGGCCTTTCAACAAACTCATAAGACAAAGAGCGCTCCGGAAAA-CAATGG 1057
Query 1064 AACTCATTCACTACCATGACGAAGCCACCCGGTACATTACAGGTGGA-GCAGTGCCAAAG 1122
||||||||||||||||| |||||| |||| | |||||||| |||||| | |||| |||
Sbjct 1058 AACTCATTCACTACCATAACGAAGTCACCAGATACATTACTGGTGGATGT-GTGCAAAAT 1116
Query 1123 GTGTTTCATATGCTTGCTTGTTGGGTTGAAGATCCAGAGAGTGATTATTTTAAAAAACAT 1182
||||||||||||||||||||| | ||||| |||||||||||||| ||||| || |||
Sbjct 1117 CCATTTCATATGCTTGCTTGTTGGATAGAAGACCCAGAGAGTGATTACTTTAAGAAGCAT 1176
Query 1183 CTTGCGCGAGTCTCTCATTTCATATGGATTGCG-GAGGACGG-CTTGAAAATCCAGACTT 1240
|| | ||||| | ||| ||||||||||| | ||||| || || ||||||||| | |
Sbjct 1177 CTCACTAGAGTCGCAGATTACATATGGATTG-GAGAGGATGGTCTA-AAAATCCAGTCGT 1234
Query 1241 TTGGTAGCCAAATATGGGATACAGCC-T-TCGTTCTCCAAGTCATGTTAGC-G--GCTGA 1295
|||||||||| | |||||||| ||| | || |||||||||||||||| | |||||
Sbjct 1235 TTGGTAGCCAGTTGTGGGATACGGCCCTATCA--CTCCAAGTCATGTTAGGTGCTGCTGA 1292
Query 1296 TGTT---GACGATGAGA-TA--AG-GCCAACGCTCATAAAGGGATACTC-TTACTTG-AG 1346
|||| || ||||||| || | || |||| | | ||||||||| || |||| ||
Sbjct 1293 TGTTATTGATGATGAGAGTATTAAAGC-AACGTTGGTCAAGGGATACAAATT-CTTGGAG 1350
Query 1347 GAAATCCCA-ATTTACAGAGAATCCTCCCGGTGACTATATCAATATGTTTAGAGACATAT 1405
|| || || || ||| ||||||||||||||||| |||| || ||||| || |||| |
Sbjct 1351 -AATTCTCAGATA-ACACAGAATCCTCCCGGTGACCATATGAAAATGTTCCGACACAT-T 1407
Query 1406 CCAAA-GGAGGGTGGGGCTATT-CAGACAAAGATCAAGGATGGCCTGTTTCAGATTGTAT 1463
|||| || || ||| || || ||||| |||||||||||||||||||||| ||||| |
Sbjct 1408 ACAAAAGGTGGATGGA-CTTTTTCAGACCAAGATCAAGGATGGCCTGTTTCTGATTGCAC 1466
Query 1464 TTCTGAGAGTTTAGAGTGCTGCCTGATCTTTGAGAGT-ATGTCATCCGA-ATTCATTGGT 1521
| |||||||||||||||| ||||| |||||||| || | | | | || || |||||||
Sbjct 1467 TGCTGAGAGTTTAGAGTGTTGCCTAATCTTTGAAAGCCA-GCCGTTTGAGAT-CATTGGT 1524
Query 1522 GAGAAAATGGAAGTGGAGAGGCTTTATGATGCCGTCAATATGCTTCTCTATATGCAGAGC 1581
||||||||||| || |||| |||||||| | | | || || | | | | |
Sbjct 1525 GAGAAAATGGATGTCAAGAGACTTTATGA--C-G-C--TA-GC------A-A-G-A-A-- 1565
Query 1582 AGAAATGGAGGGATATCTATATGGGAAGC-AGCGAGTGGGAAAAAATGGCTAGAGTGGCT 1640
|||||| ||||| ||||| || ||| |||||||| ||||||||||||||
Sbjct 1566 -----TGGAGGTATATCGGCGTGGGA-GCCAGCCCTTGGGAAAACCTGGCTAGAGTGGCT 1619
Query 1641 TAGTCCCA-TAGAGTTTATTGAAGACACTATCCTCGAGCATGAGTATCTAGAATGCACGG 1699
||||| | | ||||| || ||| |||| ||| | ||||| |||||| |||||||||| |
Sbjct 1620 CAGTCC-AGTGGAGTTCATGGAAAACACAATCGTGGAGCACGAGTATGTAGAATGCACAG 1678
Query 1700 GGTCAGCGATAGTGGTGTTGG-CACGCTTCATGAAACAGTTTCCAGGGCATAGAACAGAA 1758
| |||| |||| | | |||| || | |||| | |||||||||||| || ||| |||||
Sbjct 1679 GATCAGTGATAATAGCATTGGTCAGG-TTCAAGCAACAGTTTCCAGCTCACAGAGCAGAA 1737
Query 1759 GAAGTCAAAAAATTTATAACAAAGGGAGTGAAATACATAGAA-AGCTTACAAATTGCGGA 1817
|| || ||| |||||| ||||||||||||||||||||| | ||||||| | | |||
Sbjct 1738 GAGGTTGAAAGGTTTATAGTAAAGGGAGTGAAATACATAGAGGA-CTTACAACTGGTGGA 1796
Query 1818 TGGTTCGTGGTACGGAAACTGGGGAATATGTTTTATATATGGGA-C-TTTCTTTGCTGTC 1875
|||||| ||||| || ||||||||| | ||||| || ||||| | | ||| |||||| |
Sbjct 1797 TGGTTCATGGTATGGCAACTGGGGAGTGTGTTTCATGTATGG-ATCCTTT-TTTGCTATA 1854
Query 1876 CGAGGTTTAGTGGCCGCGGGAAACACTTAC-GATAACTGTGAGGCAATCCGTAGAGCAGT 1934
||||| ||||||| || ||||| ||||| | |||||| |||| || |||||||||||
Sbjct 1855 AGAGGTCTAGTGGCTGCAGGAAAGACTTATAG-TAACTGCAAGGCGATTCGTAGAGCAGT 1913
Query 1935 TC-GATTCCTTCTTGATATACAAAACGGTGAAGGCGGTTGGGGAGAGAGTTTTCTTTCTT 1993
|| | ||| |||| | | |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1914 TCAG-TTCTTTCTCAACACACAAAACGTTGAAGGCGGTTGGGGAGAGAGTTTTCTCTCTT 1972
Query 1994 GCCCCAACAA-AAATTATATTCCTTTGGAGGGGAACAAGACCGATGTGGTGAATACAGGA 2052
|||||||||| |||| |||||||| | || || ||||||| |||| ||||||||||||
Sbjct 1973 GCCCCAACAAGAAAT-ATATTCCTCTAGAAGGAAACAAGAGTAATGTAGTGAATACAGGA 2031
Query 2053 CAAGCAT-TGATGGTTCTAATAATGGGTGGTCAGATGGATAGAGATCCTTTACCGGTTCA 2111
||||| | | |||| |||||| ||||||||||||||||| || | || ||||| |||||
Sbjct 2032 CAAGC-TCTAATGGGTCTAATTATGGGTGGTCAGATGGAGCGAAACCCGTTACCAGTTCA 2090
Query 2112 CCGCGCTGCAAAAGTATTAATCAATTCACAAATGGATAACGGTGATTTTCCACA-GCAGG 2170
||| ||||| ||||| || ||||||| || |||||||||||||||||||| || | |||
Sbjct 2091 CCGTGCTGCCAAAGTGTTGATCAATTTGCAGATGGATAACGGTGATTTTCCCCAAG-AGG 2149
Query 2171 AAATAAG-GG-GTGTTTACAAAATGAATGTGATGCTAAATTTTCCAACCTTTAGAAAC-T 2227
||||||| || ||||||| | | |||||||| ||||| ||| |||||| | ||| ||| |
Sbjct 2150 AAATAAGAGGAGTGTTTA-AGA-TGAATGTGCTGCTACATTATCCAACATATAGGAACAT 2207
Query 2228 CTTTCACTCTTTGGGCACTAACACACTACAC-CAAG 2262
|| |||||| |||||||| ||| | || || ||||
Sbjct 2208 ATT-CACTCTCTGGGCACTCACATATTATACTCAAG 2242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85969682965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5