BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36160.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493655 jgi|Araly1|493655|fgenesh2_kg.7__3088__AT5G36160.1 1943 0.0
> Ahg493655 jgi|Araly1|493655|fgenesh2_kg.7__3088__AT5G36160.1
Length=1375
Score = 1943 bits (1052), Expect = 0.0
Identities = 1199/1272 (94%), Gaps = 2/1272 (0%)
Strand=Plus/Plus
Query 17 aaaaaaaTGGGAGAAAACGGAGCCAAGCGATGGAACTTCGGAGCTAACGAGGTCGTCGAA 76
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 AAAAAAATGGGAGAAAACGGAGCCAAGCGATGGAACTTCGGAGCTAACAAGGTCGTTGAA 60
Query 77 CGATCTAACTCACTTACCATTCGTGATTACCTTAACACCTTAATCAATTGTCTCGACGGT 136
|||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||
Sbjct 61 CGATCTAACTCACTTACCGTTCGTGATTATCTTAACACCTTAATCAGTAATCTCGACGGT 120
Query 137 GGTGATGTAAGACCCGTCATCCCACTAGGTCACGGCGATCCTTCTCCGTTCCCGAGCTTT 196
||||| ||||| || |||||||| || || |||||||||||||| |||||||||||||||
Sbjct 121 GGTGACGTAAGGCCAGTCATCCCCCTTGGACACGGCGATCCTTCGCCGTTCCCGAGCTTT 180
Query 197 CGTACCGATCAAGCCGCTGTTGAAGCCATCTGTGATGCTGTCCGTTCGACCAAGTTTAAC 256
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTACAGATCAAGCCGCTGTTGACGCCATCTGTGATGCTGTCCGTTCGACCAAGTTTAAC 240
Query 257 AACTACTCTTCTTCTTCCGGTGTTCCTGTCGCTAGGAAGGCTGTTGCAGAGTACCTCTCT 316
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACTATTCTGCTTCTTCCGGTGTTCCTGTCGCTAGGAAGGCTGTTGCAGAGTACCTCTCT 300
Query 317 -AGTGATCTCTCTTACCAGATATCACCAAATGATGTTCATATCACAGCTGGTTGTGTGCA 375
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CAG-GATCTCTCTTACCAGATATCTCCAAATGATGTTCATATCACAGCTGGTTGTGTGCA 359
Query 376 AGCCATTGAGATTTTGATATCCGCTCTCGCAATTCCTGGAGCTAACATTCTGCTACCTAG 435
|||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct 360 AGCCATCGAGATTTTGATATCGGCTCTCGCAACTCCTGGAGCCAACATTCTGCTTCCTAG 419
Query 436 GCCTACTTACCCGATGTACGATTCCCGAGCGGCTTTTTGCCAACTCGAGGTTCGTTATTT 495
|||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 420 GCCTACTTACCCGATGTATGATTCCCTAGCGGCTTTCTGCCAACTCGAGGTTCGTTCTTT 479
Query 496 CGACCTCCTACCGGAAAATGGTTGGGATGTTGATCTAGATGGAGTTGAAGCTCTTGCGGA 555
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TGACCTCCTACCAGAAAATGGTTGGGATGTTGATCTGGATGGAGTTGAAGCTCTTGCGGA 539
Query 556 TGACAAAACCGTTGCTATACTTGTTATCAACCCTTGCAATCCATGTGGGAATGTTTTCTC 615
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGAAAAAACCGTTGCTATAGTTGTTATCAACCCTTGCAATCCATGTGGGAATGTTTTTTC 599
Query 616 TCGCCAACATCTTCAAAAGATTGCAGAGACGGCTTGCAAGCTTGGTATACTTGTGATCGC 675
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 600 TCGTCAACATCTTCAAAAGATTGCAGAGACGGCTTGCAAGCTTGGAATACTTCTGATTGC 659
Query 676 AGACGAAGTCTATGACCATTTTGCCTTTGGGGATAAACCATTTGTGTCCATGGCAGAGTT 735
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AGACGAAGTCTATGACCATTTTGCCTTTGGGGACAAACCATTTGTGTCCATGGCAGAGTT 719
Query 736 TGCAGAGCTAGTGCCTGTTATTGTCTTAGGTGCTATATCTAAAAGATGGTTTGTTCCTGG 795
||||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 720 TGCAGAGATAGTTCCTGTGATTGTGTTAGGTGCCATATCTAAAAGATGGTTTGTTCCTGG 779
Query 796 ATGGAGACTTGGTTGGATGGTGACTCTTGACCCTCATGGCATCATGAAAGATTCTGGGTT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGGAGACTTGGTTGGATGGTGACTCTTGACCCTCATGGCATCATGAAAGATTCTGGGTT 839
Query 856 TGTTCAGACTCTTATCAATGTTGTCAACATGTCGACGGATCCTGCAACGTTTATTCAGGG 915
|||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 840 TGTTCAGACTCTTATCCATGTTGTCAACTTGTCCACGGAGCCTGCAACGTTTATTCAGGG 899
Query 916 AGCAATGCCTGATATCATTGGGAATACAAAGGAAGAGTTCTTCTCATCAAAACTTGAAAT 975
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 900 TGCAATGCCTGATATCATTGGGAATACAAAGGAAGAATTCTTCGCATCAAAACTCGAAAT 959
Query 976 GGTGAAAAAATGTGCAGAGATTTGTTATGAGGAGCTTATGAAGATTCCTTGCATCACTTG 1035
||||| ||||||||||||||||||||| || ||| ||||||| |||||||||||||||||
Sbjct 960 GGTGAGAAAATGTGCAGAGATTTGTTACGAAGAGATTATGAAAATTCCTTGCATCACTTG 1019
Query 1036 CCCCTGCAAACCCGAGGGCTCAATGTTCACGATGGTGAAGTTAAACTTTTCACTACTCGA 1095
|||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||
Sbjct 1020 CCCCTGCAAACCCGAGGGGTCAATGTTCACGATGGTGAAGTTAAACCTCTCGCTACTCGA 1079
Query 1096 AGATATCAGTGATGATTTGGACTTCTGCTCCAAGCTGGCTAAAGAGGAATCTATGATCAT 1155
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGATATCAATGATGATGTGGACTTCTGCTCCAAGCTGGCTAAAGAGGAATCTATGATCAT 1139
Query 1156 CCTACCAGGTCAAGCTGTTGGGCTTAAGAACTGGCTACGTATCACCTTTGCAGTTGAGCT 1215
||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1140 TTTACCAGGCCGAGCTGTTGGGCTCAAGAACTGGCTACGTATCACCTTCGCAGTTGAGCT 1199
Query 1216 TGAGCTTCTCATAGAAGGGTTTTCCAGGCTAAAGAACTTTACTGAGAGACACTCCAAGAA 1275
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 TGAGCTTCTCATAGAAGGGTTTTCCAGGCTAAAGAACTTTGCTGAGAGACACTCCAAGAA 1259
Query 1276 TCAGCCATGAGA 1287
|||||||||||
Sbjct 1260 GCAGCCATGAGA 1271
Score = 137 bits (74), Expect = 2e-31
Identities = 96/106 (91%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 1313 TCCACAGCCAAAGCAAATTAGATTTTGCTGT-GAGGCTATTTTACATACTATTGTTGGCT 1371
|||||||||||||||||||||||||||| || |||||| | ||||||| || ||||||||
Sbjct 1272 TCCACAGCCAAAGCAAATTAGATTTTGC-GTAGAGGCT-TATTACATAATACTGTTGGCT 1329
Query 1372 TTATAAAATATTTGCAC-AAACAATGAATCACTAATGCCAAGAAGC 1416
|||||||| |||||||| ||||||||||||| | ||||||||||||
Sbjct 1330 TTATAAAACATTTGCACTAAACAATGAATCAGTCATGCCAAGAAGC 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5