BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36170.1
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493658 jgi|Araly1|493658|fgenesh2_kg.7__3091__AT5G36170.2 2141 0.0
> Ahg493658 jgi|Araly1|493658|fgenesh2_kg.7__3091__AT5G36170.2
Length=1588
Score = 2141 bits (1159), Expect = 0.0
Identities = 1348/1439 (94%), Gaps = 14/1439 (1%)
Strand=Plus/Plus
Query 16 AAGGTCAGAAATCTGAAGAAAAGCTTTGAGCAGAA-ACA-TGTCCATGGAGCTCACCGTT 73
|||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1 AAGGTCAGAAATTTGAAGAAAAGCTTTGAGCAGAAGA-ATTGTCCATGGAGCTCACCGTT 59
Query 74 CTCGGACCCCTCGCCGGTCGGAGTTTCGCAATCGCCGGAAAAC-CTAAACTTCTGCTTCT 132
|||||||| ||||||||||||||||| |||||| ||| ||||| | ||||| ||||||||
Sbjct 60 CTCGGACCTCTCGCCGGTCGGAGTTTTGCAATCACCGCAAAACAC-AAACTGCTGCTTCT 118
Query 133 TCGACCAACAAACctccctcttctccgtctctcactcccgctttct-cttcccaatttct 191
||||||||| || ||||||||||||||||||||||||| |||| || || ||||| ||||
Sbjct 119 TCGACCAACTAATCTCCCTCTTCTCCGTCTCTCACTCCTGCTTCCTCCTCCCCAA-TTCT 177
Query 192 cttcgtcctc-tcGTTTTAATTCGCCCA-TAGTATTCGCTGCACAGGAGAGTAACTTGAG 249
|||| || || || |||| || || |||||||||||||||||||||||||| ||||
Sbjct 178 CTTCTTCTTCTTC-TTTT-GTT---TCAGTAGTATTCGCTGCACAGGAGAGTAACCTGAG 232
Query 250 TGTATCCAACGAAAACGAAACCAGTGAGTGGCTGATGCAAGATTTTTATACATTGAGAAA 309
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 233 TGTATCGAATGAAAATGAAACCAGTGAGTGGCTAATGCAAGATTTTTATACATTGAGGAA 292
Query 310 AGATGTAGAAATAGCATCAGCTCGTGTTGAAGAGATTAGAGCTTCTGCTAATTTACAACA 369
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||
Sbjct 293 AGATGTTGAAATAGCATCAGCTCGTGTTGAAGAGATTAGAGCATCTGCTGGTTTAGAGCA 352
Query 370 ACTAGAACAAGAGATTACAAATCTGGAATCAAAAGCTACTGATACATCGTTTTGGGATGA 429
| |||||||||||||| | ||| |||||||||||||||||||||| || |||||||||||
Sbjct 353 ATTAGAACAAGAGATTGCTAATTTGGAATCAAAAGCTACTGATACCTCTTTTTGGGATGA 412
Query 430 TCGTACTAAAGCTCAAGAAACTTTATCGTCTTTAAATGATCTTAAAGATCGTATGCGGTT 489
||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||
Sbjct 413 TCGTACTAAAGCTCAAGAAACGTTATCGGCTTTAAACGATCTTAAAGATCGGATGCGGTT 472
Query 490 ACTCTCTGAGTTCAAAACGATGGTTGAAGATGCCGAAACGATTGTTAAACTAACAGAAGA 549
|| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 473 GCTTTCTGAGTTCAAAACCATGGTTGAAGATGCGGAAACGATTGTTAAACTAACGGAAGA 532
Query 550 GATGGACTCTACTGATGTTAGTTTACTTGAAGAAGCCATGGGAATCATTAAAGAGTTGAA 609
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 533 GATGGACTCTACTGATGTTAGTTTACTTGAAGAAGCAATGGGAATCATCAAAGAGTTGAA 592
Query 610 TAAATCTTTAGATAAATTTGAGCTTACTCAGCTTTTATCAGGACCTTATGACAAAGAAGG 669
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 593 TAAATCTTTAGATCGATTTGAGCTAACTCAGCTTTTATCAGGACCTTATGACAAAGAAGG 652
Query 670 TGCTGTTGTTTACATTACAGCTGGAGCTGGAGGAACAGATGCACAGGATTGGGCTGATAT 729
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 653 TGCTGTTGTCTACATTACAGCCGGAGCTGGAGGAACAGATGCACAGGATTGGGCCGATAT 712
Query 730 GTTGCTTAGGATGTATATGAGATGGGGAGAGAAGCAGCGGTACAAGACGAAAGTTGTTGA 789
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 713 GCTGCTTAGGATGTATATGAGATGGGGAGAGAAGCAACGGTACAAGACAAAAGTTGTTGA 772
Query 790 AATGTCTAATGGAGAAGAGGCAGGGATTAAGTCAGCGACTCTTGAAATTGAAGGGCGTTA 849
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 AATGTCTAATGGAGAAGAGGCAGGGATTAAGTCAGCGACCCTTGAAATTGAAGGGCGTTA 832
Query 850 TGCATATGGTTACATTTCAGGGGAGAAAGGAACTCATAGGATTGTCCGACAATCGCCTTT 909
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 833 TGCATATGGTTACATTTCAGGGGAGAAAGGAACTCATAGGATTGTTCGACAATCACCATT 892
Query 910 CAATTCGAAAGGTCTTCGCCAGACAAGCTTTTCTGGTGTGGAAGTGATGCCGCTTTTGCC 969
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 CAATTCGAAAGGTCTTCGGCAGACAAGCTTTTCTGGTGTGGAAGTGATGCCGCTTCTGCC 952
Query 970 TGAGGAAGCGGTGGGAATCGAAATACCAGAAGAGGACCTTGACATTAGTTTCACGAGGGC 1029
||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 953 TGAGGAAGCAGTGGGAATTGAAATACCAGAGGAAGACCTTGACATTAGTTTCACGAGGGC 1012
Query 1030 AGGTGGGAAAGGAGGACAGAATGTTAACAAGGTTGAAACTGCTGTACGGATTACTCATAT 1089
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1013 AGGTGGGAAAGGAGGACAGAATGTCAACAAGGTTGAAACTGCTGTTCGGATTACTCACAT 1072
Query 1090 CCCTACTGGTGTTGCTGTTCGTTGCACAGAGGAGAGAAGTCAACTGGCGAACAAGACGAG 1149
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CCCTACTGGTGTTGCTGTCCGTTGCACAGAGGAGAGAAGTCAACTGGCGAACAAGACGAG 1132
Query 1150 AGCTCTGATCAGACTAAAAGCGAAACTGATGGTGATTGCGGAGGAGCAACGTGCTACTGA 1209
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1133 AGCTCTGATCAGACTAAAGGCGAAACTGTTGGTGATTGCGGAGGAGCAACGTGCGACTGA 1192
Query 1210 AATCAAGGAAATAAGAGGAGATGCAGTGAAAGCTGAATGGGGACAGCAGATCAGGAACTA 1269
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1193 AATCAAGGAAATAAGAGGAGATGCAGTGAAAGCTGAATGGGGACAGCAGATTAGGAACTA 1252
Query 1270 CGTGTTTCATCCGTACAAACTCGTTAAGGATGTCCGAACAGGTCATGAAACTTCTGATAT 1329
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CGTGTTTCATCCGTACAAACTGGTTAAGGATGTCCGAACAGGTCATGAAACTTCTGATAT 1312
Query 1330 CACATCTGTAATGGATGGTGACTTGGACCCTTTCATCAAAGCTTACCTTAAGCATAAGTA 1389
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1313 CACATCTGTGATGGATGGTGACTTGGATCCTTTCATCAAAGCTTACCTTAAGCATAAGTA 1372
Query 1390 CACCTTAGCCATGGCTTCTGCTGTAACCAATTAGAATGCTGAGGATAGGCTTGTTCCTT 1448
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1373 CACCTTAGCCATGGCTTCTGCTGTAACCAATTAGAATGTTGTTGATAGGCTTGTTCCTT 1431
Score = 193 bits (104), Expect = 4e-48
Identities = 142/159 (89%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 1478 TCCTACTAGACTGTTCAATTTTATAGCATAATCTTGAATTCCAACAG-T---C--AATGT 1531
|||| |||||||||||||||||| ||||||||||||||||||||||| | | |||||
Sbjct 1431 TCCTCCTAGACTGTTCAATTTTACAGCATAATCTTGAATTCCAACAGATAAGCTTAATGT 1490
Query 1532 GGGATTGTGAGTCAAGTCTGTTTGTATCTAAATAAAACCGCATTTTGTTTTAAACAAAAC 1591
| |||||||||| | |||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1491 GAGATTGTGAGTTATGTCTGTTTGTATCTAAATAAAACCGCATTTTGTTCTACACGAAAC 1550
Query 1592 GAAACATAAAACTAACCATAAGCC-CTACCAAACCATAT 1629
||||||||||||||| ||||| || ||||||||||||||
Sbjct 1551 GAAACATAAAACTAATCATAA-CCACTACCAAACCATAT 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5