BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36200.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1 298 8e-80
Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854 248 8e-65
Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905 244 1e-63
Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1 233 2e-60
Ahg947266 jgi|Araly1|947266|scaffold_703495.1 209 4e-53
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 178 1e-43
Ahg930557 jgi|Araly1|930557|scaffold_303014.1 150 2e-35
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 150 2e-35
Ahg929516 jgi|Araly1|929516|scaffold_301973.1 145 1e-33
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 135 6e-31
Ahg930559 jgi|Araly1|930559|scaffold_303016.1 115 8e-25
Ahg929515 jgi|Araly1|929515|scaffold_301972.1 111 1e-23
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 104 2e-21
Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1 89.8 5e-17
Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 71.3 2e-11
Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1 62.1 1e-08
> Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1
Length=1298
Score = 298 bits (161), Expect = 8e-80
Identities = 430/553 (78%), Gaps = 45/553 (8%)
Strand=Plus/Plus
Query 647 TGTCTCTCAAGGGAAACACTTACTGGTTTGCTAGAGAGATAAATATAAGAGGAGAAAGAA 706
||||||| ||||| || |||||||||| ||||| | ||| || || || || | ||
Sbjct 639 TGTCTCTTAAGGGGAATACTTACTGGTATGCTA-A-AGAGAAGCAT--GA-CAG-AGGAG 692
Query 707 TAGATGATCCTCCTGACTTCTTGATCTGTTTTGACTTTACAACAGAGAGATTTGGACCGC 766
||| ||| | ||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 693 GAGAGGAT-AT--TGATTTCTTGATATGTTTTGATTTTACATCAGAGAGATTTGGACCGC 749
Query 767 GTCTTCAC-CTGCCCTTT--CAC-TCT-C-A-TTCTGATGATACTGTGATTCTCTCTAGT 819
|||| | | ||||| ||| | | ||| | | || || |||| ||| | ||||||||||
Sbjct 750 GTCTGC-CTCTGCCTTTTAACTCTTCTCCTACTTGGGAAGATATTGTTACTCTCTCTAGT 808
Query 820 GTTAGAGAAGAACAGCTTGCGGTGTTGATTAAGCGC-TTCGATTTATGGAGGATGGAGAT 878
||| ||||||| ||||||||||||||| || || || ||| | | | ||||||||||
Sbjct 809 GTTGGAGAAGATCAGCTTGCGGTGTTGTTTCAGAGCAATCG-TACAAAGTGGATGGAGAT 867
Query 879 TTGGGTTACGA-CTAAGATTGAGCCTA-AGGAGGTCTCATGGAACAAGTTGTTCTTAGCG 936
|||| |||||| | ||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 868 TTGGATTACGAGC-AAGATTGAGCCTACA-GAGGTTTCATGGAACAAGTTGTTCTTAGCG 925
Query 937 GTTGATATGATACCACTGATCACTGCTTTTCAGTTT-TGTA--ATG-TG--AGTTTTTTC 990
|||||||||| | |||| | | | | |||| |||| || ||| || ||||| |||
Sbjct 926 GTTGATATGAGAGCACTCA-CTC-G-TTTTGAGTTCCTGGCCCATGCTGGGAGTTTCTTC 982
Query 991 ATTGACGAGAAGAAGAATGTCGTCGTGGTTCTTGGTAAAGATGTGT-TGAA--TAC--A- 1044
|||||| ||||||||||||| || |||||| ||| || |||| || || ||| |
Sbjct 983 ATTGACCAGAAGAAGAATGTTGTTGTGGTTTTTGATAGAGATATGGATGCCCCTACCGAT 1042
Query 1045 CGAAACATAGCTAATATTATTGGAAATGA-TGGATACTTTA-AACAAGTGGATCTTGGAG 1102
|| ||| ||| | |||||||| || || ||||||||| | || ||||||||||||| |
Sbjct 1043 CGTGGCATGGCTTACATTATTGGGAA-GAATGGATACTTCAGAA-AAGTGGATCTTGGGG 1100
Query 1103 AATCTACAAACAA-ATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
|| | || || | ||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1101 AAGATGCAGACTCGAG-TTGTTACCCACTTGTCTGTTCTTATGTTCCAAGCTCAGTGCAA 1159
Query 1162 ATCAAGCAAGCTA 1174
|||| ||| ||||
Sbjct 1160 ATCAGGCA-GCTA 1171
> Ahg904726 jgi|Araly1|904726|Al_scaffold_0003_1854
Length=1182
Score = 248 bits (134), Expect = 8e-65
Identities = 373/481 (78%), Gaps = 46/481 (10%)
Strand=Plus/Plus
Query 720 TGACTTCTTGATCTGTTTTGACTTTACAACAGAGAGATTTGGACCGCGTCTTCAC-CTGC 778
||| ||||||||||||||| | |||||| | ||||||||||| |||||||||| | |||
Sbjct 693 TGATTTCTTGATCTGTTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTC-CTTTGC 751
Query 779 CCTTTCACTCTCAT-TCT-GATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCT 836
| ||| |||||| | | || |||||||||| ||| ||||||||||||||||| || ||
Sbjct 752 CGTTTTACTCTC-TGAATGGA-GATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACT 809
Query 837 TGCGGTGTTGA-TTAAGCGC--T-TCGATTTATGGAGGATGGAGATTTGGGTTACGACTA 892
||| ||||| | || ||||| | | ||||| | |||||||||||||||||||||||
Sbjct 810 TGCTGTGTT-ATTTCAGCGCGGTGACAATTTA---AAGATGGAGATTTGGGTTACGACTA 865
Query 893 AGATTGAGCCT-AAGGAGGTCTCATGGAACAAGTTGTTCTTAGCGGTTGATATG-ATACC 950
||||||| ||| ||| ||| | ||| ||||||||||||||| || |||||| | |||
Sbjct 866 AGATTGAACCTGAAGT-GGTGTTGTGGGGCAAGTTGTTCTTAGCAGTGGATATGCA-ACC 923
Query 951 ACTGATCACTGCTTTTCAGTTTTGTA-AT---G-TG-A-GTTTTTTCATTGACGA-GAAG 1002
||| ||||| |||||| |||| || || | || | |||| |||||||||| || |
Sbjct 924 ACT---CACTGATTTTCAATTTT-TATATACAGATGCAAGTTTCATCATTGACGAAGAGG 979
Query 1003 AAGAATGTCGTCGTGGT-TCTTGGTAAAGAT---G-TGT--TGAATAC-AC--GAAACAT 1052
| ||| || || || || | ||| |||||| | ||| ||||||| || | ||||
Sbjct 980 A-GAAAGTTGTTGTAGTGT-TTGATAAAGACAAAGATGTAATGAATACCACTCGCAACAC 1037
Query 1053 AGCTAATATTATTGGAAATGATGGATACTTT-AAACAAGTGGATCTTGGAGAATCTACAA 1111
|||| | || |||||| | |||||||| || ||| | |||||||| ||| |||||||
Sbjct 1038 AGCTTACATCATTGGAGAGGATGGATA-TTACAAAGAGGTGGATCTCGGAAAATCTACTG 1096
Query 1112 ACAAATATTGT-TACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170
| ||| || || |||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 1097 ATGAAT-TTCAATATCCACTTGTGTGCTCGTATGTTCCAAGCTCAGCGCAAATCAAGCAA 1155
Query 1171 G 1171
|
Sbjct 1156 G 1156
> Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905
Length=1017
Score = 244 bits (132), Expect = 1e-63
Identities = 379/489 (78%), Gaps = 53/489 (11%)
Strand=Plus/Plus
Query 708 AGATGATCCT-CCTGACTTCTTGA-TCTGTTTTGACTTTACAACAGAGAGATTTGGACCG 765
||| ||| || ||||| ||| | | ||| |||||| |||||||| |||||||||||||||
Sbjct 523 AGA-GAT-CTCCCTGATTTCCT-ACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCG 579
Query 766 CGTCTTCAC-CTGCCCTTT-CA--CTCTCATTCT-GATGATACTGTGATTCTCTCTAGTG 820
| ||| | | ||| ||||| || || || || | || |||||||| | ||| |||||||
Sbjct 580 CTTCTGC-CTCTG-CCTTTCCACGCTTTC-TT-TGGA-GATACTGTCACTCTTTCTAGTG 634
Query 821 TTAGAGAAGAA-CAGCTTGCGGTGTTGATTAAGCGCTTC-GAT-T-TATGGA-GGA---T 872
|||||||| || |||||||| ||| || || || || | | | ||||| | |
Sbjct 635 TTAGAGAA-AAGCAGCTTGCCGTGCTGTTTCAG-AAATCTGGTGTACATGGATACACCGT 692
Query 873 GGAGATTTGGGTTACG-ACTAAGATTGAGCCTAA-GGAGGTCTCAT--GGAA-CAAG-TT 926
|||| ||| ||| | |||||||||||||| || | | || || | |||| | || ||
Sbjct 693 CAAGATATGGATTA-GTACTAAGATTGAGCCCAATGCA-GTGTCGTGGGGAAGC-AGCTT 749
Query 927 GTTCTTAGCGGTTGATATGATACCACTGATCACTGCTTTTCAGTTTTG-TAATGTGAGTT 985
||||||||| |||||||||| ||||| |||||| ||||| | | | | | ||||
Sbjct 750 GTTCTTAGCTGTTGATATGAAACCAC---TCACTGGTTTTC-G---CGCT-A-G-CAGTT 799
Query 986 TTTTCATTGACGAGAAGAAGAATGTCGTC-GTGGTTCTTGGTAAAGA-TGTGTTGAATAC 1043
| ||| |||||||| ||||||| |||| | |||||||||| |||||| ||| | ||| |
Sbjct 800 TCTTCGTTGACGAGGAGAAGAACGTCG-CTGTGGTTCTTGATAAAGACAGTGGTAAAT-C 857
Query 1044 ACGAAACATAGCTAATATTATTGGAAATG-ATGGATACTTTAAACAAGTGGATCTTGGAG 1102
|| ||||| ||| | || |||||||| | |||||||||| ||||||||||||||||| |
Sbjct 858 TCGCAACATTGCTTACATCATTGGAAA-GAATGGATACTTGAAACAAGTGGATCTTGGTG 916
Query 1103 AATCTACAAACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
|||||| |||| ||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 917 AATCTAGAAACCAAT-TCTGTTACCCACTTGTGTGCTCTTATGTTCCAAGCTCTCTGCAA 975
Query 1162 ATCAAGCAA 1170
||| |||||
Sbjct 976 ATCCAGCAA 984
> Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1
Length=1119
Score = 233 bits (126), Expect = 2e-60
Identities = 377/491 (77%), Gaps = 46/491 (9%)
Strand=Plus/Plus
Query 568 GAAATCTACAACTTTAACTCT-GCTTCATGGAATGTT-TTCTATTTCAC-TCGTGACTGG 624
||||||||| | || |||||| | ||||||| ||| || || |||| || |||| |
Sbjct 502 GAAATCTACGAGTTAAACTCTAAC-TCATGGAGGGTTCTT-GATGTCACTTC-CGACT-G 557
Query 625 GAAT-TACCGTATTCT-CA-A-GGCGTGTCTCTCAAGGGAAACACTTACTGGTTTGC--T 678
| || ||| || || | || | |||||| |||||||| |||| ||||| |||||||| |
Sbjct 558 GCATATACTGTTTTTTGCACATGGCGTGACTCTCAAGAGAAATACTTATTGGTTTGCTTT 617
Query 679 AGAG-AG-ATAAATATAAGAGGA-GAAAGAATAGATGATCCTCCTGACTTCTTGATCTGT 735
|||| || || | | |||| || || | |||| ||| ||||||||||||||| |||
Sbjct 618 AGAGAAGTATCGAGA-AAGAAGATCAACG-GTAGA-GAT--TCCTGACTTCTTGATATGT 672
Query 736 TTTGACTTTACAACAGAGAGATTTGGACCGCGTCTTCACCTGCCCTTTCACTCTCATTCT 795
||||| ||||||| ||| || |||||||||||||||| ||||| |||| |||| || |
Sbjct 673 TTTGATTTTACAAAAGAAAGGTTTGGACCGCGTCTTCGTCTGCCGTTTCGCTCTTATGAT 732
Query 796 GATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCGGTGTTGA-TTAAGC- 853
|| || ||||||| ||| ||||||||||||||||| || ||||| ||||| | || |||
Sbjct 733 GAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT-ATTTCAGCG 791
Query 854 -G-CTTCGATTTATGGAGGATGGAGATTTGGGTTACGACTAAGATTGAGCCT-AAGGAGG 910
| | | ||| | |||||||||||||||||||||||||||||||| ||| ||
Sbjct 792 TGAGGACAACTTA--CA-TTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGAAGT-GG 847
Query 911 TCTCATGGAACAAGTTGTTCTTAGCGGTTGATATG-ATACCACTGATCACTGCTTTTCAG 969
| ||||||| ||||||||| ||||| || |||||| | |||||| ||||| ||||||
Sbjct 848 TGTCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGA-ACCACT---CACTGATTTTCAA 903
Query 970 TTTTG--T-A-ATGTG--AGTTTTTTCATTGACGA-GAAGAAGAATGTCG-TCGTGGTTC 1021
||| | | | | | | ||||| ||||||||||| || |||||| |||| | || |||
Sbjct 904 TTTGGAGTTACAGGAGGGAGTTTCTTCATTGACGAAGA-GAAGAAAGTCGCT-GTAGTTT 961
Query 1022 TTGGTAAAGAT 1032
||| |||||||
Sbjct 962 TTGATAAAGAT 972
> Ahg947266 jgi|Araly1|947266|scaffold_703495.1
Length=278
Score = 209 bits (113), Expect = 4e-53
Identities = 177/206 (86%), Gaps = 11/206 (5%)
Strand=Plus/Plus
Query 178 GTGGTCATGATGATGGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCATAGAATTCAC 237
|||| |||| ||||||||| |||||||||||| ||||| || ||||||||| ||||||||
Sbjct 16 GTGGCCATGGTGATGGATTATAAGGTTTATTTTATGAGTGTTAATCTCCATGGAATTCAC 75
Query 238 AAAGAA-AACGACGACAACAACATTAAATCATCTATCATGCATAAAGCTAAACTCATTAG 296
||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 76 AAA-AAGGACGACGACAACAACGTTAAATCATCTATCATACATAAAGCTAAACTCATTAG 134
Query 297 CCTAAACGATGATG-A---CAT-AC-T---CAATAATACATATATAATTTTTCACTGCAA 347
|||||||||||||| | ||| || | |||||||| | ||| |||||||||||||||
Sbjct 135 CCTAAACGATGATGCAGATCATGACCTAGTCAATAATATAGATACAATTTTTCACTGCAA 194
Query 348 TGGTTTACTGTTATTGTTAGGCTTCA 373
|||| || ||||| ||||| || |||
Sbjct 195 TGGTATATTGTTACTGTTATGCATCA 220
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 178 bits (96), Expect = 1e-43
Identities = 355/472 (75%), Gaps = 50/472 (11%)
Strand=Plus/Plus
Query 724 TTCTTGA-TCTGTTTTGACTTT-ACAACAGAGAGATTT-GGACCGCGTCTT-CAC-CTGC 778
||||| | |||||||||| ||| |||| ||||| |||| || |||||| || | | ||||
Sbjct 500 TTCTT-ACTCTGTTTTGA-TTTCACAAGAGAGACATTTAGG-CCGCGT-TTGC-CTCTGC 554
Query 779 CCTTTCACTC-TCATTC-TGATGATACTGTGATT-CTCTCTAGTGTTAGAGAAGAACAGC 835
| || | || | | || ||| |||||| || || | |||||||||||||| || ||||
Sbjct 555 CGGTTGAGTCGT-A-TCTTGAAGATACTCTG-TTATTATCTAGTGTTAGAGATGAGCAGC 611
Query 836 TTGCGGTGTTGA-TTAAGCGCT-TCGATTTA-TGGAGGATGGAGATTTGGGTTACGACTA 892
|||||||||| | || ||| | | ||| | | | ||||||||| ||||| || ||||
Sbjct 612 TTGCGGTGTT-ATTTCAGC-ATATGGATACATTACA-GATGGAGATCTGGGTGACAACTA 668
Query 893 AGATTGAGCCTAAGGA-GGTCTCATGGA--A-CAAGTTGTTCTTAGCGGTTGATATGATA 948
|||||||||| || | ||| || |||| | |||||| |||||| | |||||||||| |
Sbjct 669 AGATTGAGCCCAA-CACGGTGTCGTGGAGCAGCAAGTTCTTCTTATCAGTTGATATGAGA 727
Query 949 CCACTGATCACTGC-TTT--TC-A-GTTTT-G-TAAT-G-TG--AGTTTTTTCATTGACG 997
||| | | | || ||| || | ||||| | | || | || ||||| |||| ||| |
Sbjct 728 GAACTCA-C-CGGCATTTACTCTATGTTTTCGTTTATGGCTGCAAGTTTCTTCACTGATG 785
Query 998 AGAAGAAGAATGTCGTC-GTGGTTCTTGGTAAA-G--ATGTGTTG-A-AT-ACACGAAAC 1050
|| ||||||| || | | |||||| ||| |||| | | | | | || | || ||
Sbjct 786 AGGAGAAGAAAGTTG-CAGTGGTTTTTGATAAAGGAAAAAAGAGGAAGATGATGCGCAAT 844
Query 1051 ATAGCTAATATTATTGGAAATGATGGATACTTTAAACAAGTGGATCTTGGAGAATCTACA 1110
|||| | ||| ||||| | ||||||| ||| ||| |||||||||||||||||||| ||
Sbjct 845 GCAGCTTACATTGTTGGAGAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGAATCTCCA 904
Query 1111 AACAAATAT-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
|||||| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 905 AACAAAAATCTCCGA-CCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 955
> Ahg930557 jgi|Araly1|930557|scaffold_303014.1
Length=643
Score = 150 bits (81), Expect = 2e-35
Identities = 351/474 (74%), Gaps = 48/474 (10%)
Strand=Plus/Plus
Query 724 TTCTTGATCTGTTTTGACTTTACAA-CAGAGAGATTTGGACCGCGTCTTCAC-CTGCCCT 781
||||| ||||||||||| ||||||| | |||||||||||||||| | || | |||| |
Sbjct 153 TTCTTAATCTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCAT-TTGTCTATGCCGT 210
Query 782 TTCA-CTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCG 840
| | | | ||| ||| | ||||| || ||| |||||||| | |||||| ||||||||
Sbjct 211 ATGAGTTGT-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCA 269
Query 841 GTGTTGATT-AAGCGCTT-CGATTTA-TGGAGGATGGAGATTTGGGTTACGACTAAGATT 897
|| ||| || || || || ||| | | || ||| || || ||| ||||||||||||||
Sbjct 270 GTTTTGTTTCAA-CG-TTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 326
Query 898 GAGCCTAAGGAGGTCTCATGG-A-A-CAAGTTGTTCTTAGCGGTTG-ATATGATACCACT 953
||||| || | ||| || ||| | | |||| |||||||||| | || |||||| | || |
Sbjct 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCG-TGAATATGAGATCA-T 384
Query 954 GATCAC-TGC--T---TTTCAG-TTTTG-T---A-ATGTGAGTTTTTTCATTGACGAGAA 1001
|||| ||| | |||||| ||||| | | ||| |||||| ||||||||| || |
Sbjct 385 --TCACTTGCTTTGACTTTCAGATTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGA 442
Query 1002 GAAGAATGTCGTCGTGGT-TCTTGGTAAAGA-TGTG-TTG-AA--T--A---CA--CGAA 1048
|||||| |||| ||| || | ||| |||| | | | || | | || || |
Sbjct 443 GAAGAAAGTCGCCGTAGTGT-TTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCA 501
Query 1049 ACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAACAAGTGGATCTTGGAGAATCT 1107
| ||||| | || |||| | | ||||||| ||| ||| ||| ||||||||||||| |
Sbjct 502 CCGTAGCTTACATCGTTGG-AGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATAT 560
Query 1108 ACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
| ||||| ||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 561 GGAGACAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 614
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 150 bits (81), Expect = 2e-35
Identities = 351/474 (74%), Gaps = 48/474 (10%)
Strand=Plus/Plus
Query 724 TTCTTGATCTGTTTTGACTTTACAA-CAGAGAGATTTGGACCGCGTCTTCAC-CTGCCCT 781
||||| ||||||||||| ||||||| | |||||||||||||||| | || | |||| |
Sbjct 577 TTCTTAATCTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCAT-TTGTCTATGCCGT 634
Query 782 TTCA-CTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCG 840
| | | | ||| ||| | ||||| || ||| |||||||| | |||||| ||||||||
Sbjct 635 ATGAGTTGT-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCA 693
Query 841 GTGTTGATT-AAGCGCTT-CGATTTA-TGGAGGATGGAGATTTGGGTTACGACTAAGATT 897
|| ||| || || || || ||| | | || ||| || || ||| ||||||||||||||
Sbjct 694 GTTTTGTTTCAA-CG-TTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 750
Query 898 GAGCCTAAGGAGGTCTCATGG-A-A-CAAGTTGTTCTTAGCGGTTG-ATATGATACCACT 953
||||| || | ||| || ||| | | |||| |||||||||| | || |||||| | || |
Sbjct 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCG-TGAATATGAGATCA-T 808
Query 954 GATCAC-TGC--T---TTTCAG-TTTTG-T---A-ATGTGAGTTTTTTCATTGACGAGAA 1001
|||| ||| | |||||| ||||| | | ||| |||||| ||||||||| || |
Sbjct 809 --TCACTTGCTTTGACTTTCAGTTTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGA 866
Query 1002 GAAGAATGTCGTCGTGGT-TCTTGGTAAAGA-TGTG-TTG-AA--T--A---CA--CGAA 1048
|||||| |||| ||| || | ||| |||| | | | || | | || || |
Sbjct 867 GAAGAAAGTCGCCGTAGTGT-TTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCA 925
Query 1049 ACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAACAAGTGGATCTTGGAGAATCT 1107
| ||||| | || |||| | | ||||||| ||| ||| ||| ||||||||||||| |
Sbjct 926 CCGTAGCTTACATCGTTGG-AGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATAT 984
Query 1108 ACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
| ||||| ||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 985 GGAGACAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 1038
> Ahg929516 jgi|Araly1|929516|scaffold_301973.1
Length=1193
Score = 145 bits (78), Expect = 1e-33
Identities = 867/1223 (71%), Gaps = 153/1223 (13%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCCGATCTTCCAAATGATTTGGTGGAGGAGATCATCTCT-AGGGTTCCGGT 59
||||||||||| |||||| || | |||||||| || ||| | |||| | || |||||| |
Sbjct 21 ATGGCGATGTCGGATCTTACACAGGATTTGGTAGAAGAGGTGATCT-TGAGAGTTCCGCT 79
Query 60 AAAATCT-ATAAGAGCAGTAAGCTCTACTTGCAAAAACTGGAACACTTTATCCAACGA-T 117
|| |||| |||| |||||| | ||||||||||||||||||||||||||||| || | |
Sbjct 80 AACATCTCATAA-AGCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCGAAAAACT 138
Query 118 C-AT-AGCTTTACGAGG-A-AG-CTCTTTGGTAAAACAATA--A-CAACAAAGGAAAATG 169
|| ||||| | ||| | | | ||| | ||| ||| | | |||||||| | |
Sbjct 139 TGATGAGCTTGAA-AGGGATAAAC-CTT-GCCAAAGCAAGAGCAGCAACAAAGCAG---G 192
Query 170 AGTGTT-TGGTGGTCATGATGATGGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCAT 228
||| || || || |||| ||||||| |||||||||| |||||||| | |||||| |
Sbjct 193 AGT-TTCTGACAATCGTGATAATGGATTTTAAGGTTTATCTAATGAGCTTTGATCTCCGT 251
Query 229 AGAATTCACAAAGAAAACGACGACAACAACATTAAATCATCTATCATGC-ATAAAGCTAA 287
|| ||||||| || ||||||| | | ||| || | || | || | || | |||
Sbjct 252 GGACTTCACAATGACAACGACGTGGA-A---TTA--TC-TATAA-A-GCGAGAAGG-TAA 301
Query 288 ACTCATTAGCCTAAACGATG-ATGACATACTCAATAATACATATATAATTTTTCACTGCA 346
||| ||||||||||||||| | || | || | || | || | | || ||||| |
Sbjct 302 ACTGATTAGCCTAAACGATACA-GAGGGAGTCCGTG-TA--TCTAGAGTCTTGCACTGTA 357
Query 347 ATGGTTTACTGTTATTGTTAGGCTTCACCGACGA-TGGCATCA-AG-CTTGTGGTTACGA 403
||||| ||| |||| || ||||| | || | ||| || ||||||||| ||
Sbjct 358 GCGGTTT---GTT---GTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGA 411
Query 404 ACCCTCATT-TAGGGCAAACAAGGTGGATCAAACCTAGAAAAGCTAATTACCAGTTTTGT 462
||||| || | || ||||||||||||||| |||||||| | | ||||||
Sbjct 412 ACCCTTGTTCT-GGACAAACAAGGTGGATCGAACCTAGAG--GTTC-TTACCACAAAAA- 466
Query 463 GA-CAAGTACGCTATCGGATACGAGAAGAAGAAGAACAACTCTCTTCGTACCAACAAAAT 521
|| ||| || ||| |||||||||||| |||||| || | || | | || | | |||| ||
Sbjct 467 GAACAACTATGCTCTCGGATACGAGATGAAGAACAA-ATCT-TGT-CGAAGCTACAAGAT 523
Query 522 GTTGT--TATTTC-ATAAAGAATC-C-TTC-TGCTTCCGGATT-TAT-T-G-G--TTTGA 569
||| ||||| || | || | || || | ||||| ||| | | | ||| |
Sbjct 524 TTTGAGATATTTGGATGC-GTATGACATTAGTG-TAA-GGATTCTATATTGTGAGTTTCA 580
Query 570 AATCTACAACTTTAACTCTG-CTTCATGGAATGTT-TTCTATTTCACTCGT-GACTGGGA 626
||||||||| ||| | ||| || ||||||| | | ||| | ||||| | | |||| |
Sbjct 581 AATCTACAATTTTGATTCTAACT-CATGGAAGGCTGTTC-AGGCCACTCCTCG-CTGG-A 636
Query 627 AT-TACCGTATTCTCAA-G-GCG-TGTCTCTCAAGGGAAACACTTACTGGTTTGCT-AGA 681
|| ||| |||| |||| | | | |||||||||||||||| ||||||||||||||| | |
Sbjct 637 ATATACATTATTATCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCAAA 696
Query 682 GAGATAAATATAAGAGGAGAAAGAATAGATGATCCTCCTGACTTCTTGATCTGTTTTGAC 741
| | ||| || ||||| | || | | || | | |||| | | | | || ||
Sbjct 697 GC-ACGAATCTAGGAGGATATAG--T---T--TC-T--T-ACTT-T-G-T-T-TT--GAT 737
Query 742 TTTACAACAGAGAGATTTGGACCGCGTCTTCACC-TGCCC-TTTCACTCTCATTCT-GAT 798
|||||| | |||||||||||||||| ||| | | |||| ||| | | | || | ||
Sbjct 738 TTTACAGCTGAGAGATTTGGACCGCCTCTGC-CTATGCCTATTTT-C-CACGTTGTTGAA 794
Query 799 GATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCGGTGTTGATT-AAGCG-CT 856
||||| |||| ||| |||||||| ||||| || || || || ||||| ||| ||||| |
Sbjct 795 GATACCGTGACTCTATCTAGTGTCAGAGATGAGCAACTCGCAGTGTT-ATTTAAGCGACG 853
Query 857 TCGATTTATGG-AGGATGGAGATTTGGGTTACG-ACTAAGATTGAGCCTA-AGGAGGTCT 913
| | | || | |||||||| ||| ||||| | | |||||| ||| | || |||| |
Sbjct 854 TGG-TGCATTACAT-ATGGAGATATGGATTACGTA-TGAGATTGGGCCCAGAG-AGGTGT 909
Query 914 CATGGA--A-CAAGTTGTTCTTAGCGGTTGA-TATGATACCACTGA-TCA-CTGCTTTTC 967
| |||| | |||||||||||||||||| || ||| | |||| | | | | | | | |
Sbjct 910 CGTGGAGGAGCAAGTTGTTCTTAGCGGT-GAATATAAAACCATTTACTTATC-GATACCC 967
Query 968 A-GTTTTGTA-ATGTGAGTTT-TTTCATTGACGAGAAGAAGAATGTCGTCGTGGTTCTTG 1024
| || | | ||| |||||| ||| |||||||| ||||||| |||| ||||||| |||
Sbjct 968 ACGT---GAACATGGGAGTTTCTTTG-TTGACGAGGAGAAGAAAGTCGCCGTGGTTTTTG 1023
Query 1025 GTAAAGA-TGTGT-TGAA--T-AC-AC----GAAACATAGCTAATATTATTGGAAATGAT 1074
||| ||| | || |||| | || || | || |||| |||| | |||||| |||
Sbjct 1024 GTAGAGACT-TGGATGAACCTGACCACATTCGCGACGCAGCTTATATCACTGGAAAAGAT 1082
Query 1075 GGATACTTTAA-ACAAGTGGATCTTGGAGAATCTACAAACAAATATTG-TTACCCACT-T 1131
|||||||| || | ||||||||||||||||||||||| |||| ||| || |||| | |
Sbjct 1083 GGATACTTGAAGA-AAGTGGATCTTGGAGAATCTACATTCAAAC-TTGATTCCCCA-TAT 1139
Query 1132 GTGTGCTCTT---ATGTTCCAAG 1151
| ||||||| ||||||||||
Sbjct 1140 ATTTGCTCTTCTTATGTTCCAAG 1162
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 135 bits (73), Expect = 6e-31
Identities = 235/309 (76%), Gaps = 28/309 (9%)
Strand=Plus/Plus
Query 870 GATGGAGATTTGGGTTACGACTAAGATTGAGCCTAAGGAGGTCTCATGG-A-A-CAAGTT 926
||||||||| ||| ||||| ||||||||||||| || | ||| || ||| | | |||| |
Sbjct 804 GATGGAGATCTGGATTACGTCTAAGATTGAGCCCAACGTGGTGTCGTGGAACAGCAAGGT 863
Query 927 GTTCTTAGCGGTTGA-TATGATACCACTGA-T--CACTGC-TTTTCAGTTTTGTA-AT-G 979
||||||| | | ||| ||| | | ||| | | | || | |||||| ||| || | |
Sbjct 864 GTTCTTATCAG-TGAGTATAAAAAAACTCATTGCCCCT-CAGTTTCAG-TTT-TACTTGG 919
Query 980 TGAGTTTTTTCATTGACGAGAAGAAGAATGTCGTC-GTGGTTCTTGGTAAAGA-TGTGTT 1037
|||||| |||||||||||| ||||||| |||| | |||||| ||| |||| | |
Sbjct 920 GGAGTTTCTTCATTGACGAGGAGAAGAAAGTCG-CTGTGGTTTTTGATAAATACTACAAC 978
Query 1038 GAATAC-ACGAAACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAA-CAAGTGGA 1094
| || | || | ||||||| | || ||||| | | ||||||| ||| ||| | ||||||
Sbjct 979 G-AT-CGGCGCAGCATAGCTTACATCATTGG-AGTGGATGGATCCTTCAAAGC-AGTGGA 1034
Query 1095 TCTTGGAGAATCTACAAAC-AAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGT- 1152
||| |||||||| || || ||| |||||||||||||||||||||||||||||||||
Sbjct 1035 TCTCGGAGAATCGGCATACGCAAT-GTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTA 1093
Query 1153 TCAGTGCAA 1161
| |||||||
Sbjct 1094 T-AGTGCAA 1101
> Ahg930559 jgi|Araly1|930559|scaffold_303016.1
Length=1149
Score = 115 bits (62), Expect = 8e-25
Identities = 218/289 (75%), Gaps = 28/289 (10%)
Strand=Plus/Plus
Query 895 ATTGAG-CCTAAGGAGGTCTCATGGAAC---AAGTTGTTCTTAGCGGTTGATATGATA-C 949
|||||| |||| | ||| || |||||| ||| |||||||||| || ||||||| | |
Sbjct 838 ATTGAGCCCTATCG-GGTGTCGTGGAACAGAAAGGTGTTCTTAGCAGTGGATATGA-ACC 895
Query 950 CAC-TG-ATCAC-TGC-TTTTCAGTTTTGTAATGTGAGTTTTTTCATTGACGAGAAGAAG 1005
||| || || | | | |||||| || || || |||||| |||||||||||| ||||
Sbjct 896 CACTTGTTTC-CTTTCAGTTTCAGGTTAGTGCTGCGAGTTTCTTCATTGACGAGGAGAAT 954
Query 1006 AATGTCGTCGTGGTTCTTG-----G-TAAAG-ATGTGT--TGAA---TACACGAAACATA 1053
|| |||| ||| ||| ||| | |||| | || | |||| ||| || ||| ||
Sbjct 955 AAAGTCGCCGTTGTTTTTGATAAAGACAAAGAAGGTTTAATGAACCCTACTCGCAACGTA 1014
Query 1054 GCTAATATTATTGGAAAT-GATGG-ATACTTTAAACAAGTGGATCTTGGAGAATCTACAA 1111
||| | || |||| | | ||||| || ||| || ||||||||||||||| |||| ||
Sbjct 1015 GCTTACATCGTTGG-AGTGGATGGAAT-CTTGGAAGAAGTGGATCTTGGAGTATCTGCAG 1072
Query 1112 ACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCA 1160
||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1073 CCAAATTTTGTTACCCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1121
> Ahg929515 jgi|Araly1|929515|scaffold_301972.1
Length=943
Score = 111 bits (60), Expect = 1e-23
Identities = 199/263 (76%), Gaps = 22/263 (8%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCCGATCTTCCAAATGATTTGGTGGAGGA-GATCATCTCTAGGGTTCCGGT 59
||||||||||| ||| || || | |||||||| ||||| | | ||||| || |||||| |
Sbjct 21 ATGGCGATGTCGGATGTTACACAGGATTTGGTAGAGGATG-TGATCTCGAGAGTTCCGTT 79
Query 60 AAAATCT-ATAAGAGCAGTAAGCTCTACTTGCAAAAACTGGAACACTTTATCCAACGATC 118
|| |||| | ||| |||| | |||||||||||||||||||||||||||||||| ||
Sbjct 80 AACATCTCGT-AGATCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCCAAAAATT 138
Query 119 AT-AGCTTTACGAG-GA-AG-CTCTTTGGTAAAACAATAACAACAAAGGAA--AATGAGT 172
| ||||||| || || | | ||| | |||| ||| | || ||| ||| || ||||
Sbjct 139 -TGAGCTTTA-GAAAGATAAAC-CTT-GCTAAAGCAAGAGCAG-AAACGAAGCAA-GAGT 192
Query 173 GTTT-GG-TGGTCATGATGAT-GGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCATA 229
|| || | ||||||| || ||| | ||||||||| |||||||| | |||||| |
Sbjct 193 -TTCCGGCTA-TCATGAT-ATTGGAGTATAAGGTTTACCTAATGAGCTTTGATCTCCGTG 249
Query 230 GAATTCACAAAGAAAACGACGAC 252
|||||||||| || |||| |||
Sbjct 250 GAATTCACAATGACGACGAAGAC 272
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 104 bits (56), Expect = 2e-21
Identities = 92/109 (84%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 1074 TGGATACTTTAAACAAGTGGATCTTGGAGAATCTACA-AACAAATA-TTGTTACCCACTT 1131
||||||| ||||| |||||||||| |||||| || | ||||||| || || |||||||
Sbjct 1035 TGGATACGTTAAAGAAGTGGATCTAGGAGAACCT-GATGACAAATACTT-TTTCCCACTT 1092
Query 1132 GTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAAGCTACACGAG 1180
|||||||||||||||||||||| ||| ||||||||| || || || |||
Sbjct 1093 GTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAACCTGCAGGAG 1141
> Ahg479548 jgi|Araly1|479548|fgenesh2_kg.3__2249__AT3G20400.1
Length=318
Score = 89.8 bits (48), Expect = 5e-17
Identities = 80/94 (85%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 1072 GATGGATAC-TTTAAACAAGTGGATCTTGGAGAATCTAC-AAAC--AAATATTGTTACCC 1127
||||||| | |||||| |||||||| ||||||||||| | |||| |||| | | | ||
Sbjct 220 GATGGAT-CTTTTAAAGAAGTGGATTTTGGAGAATCT-CGAAACAGAAATCTCG--AACC 275
Query 1128 ACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
|||||||||||||||||||||||||||| |||||
Sbjct 276 ACTTGTGTGCTCTTATGTTCCAAGTTCAATGCAA 309
> Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469
Length=987
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1130 TTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170
||| |||||||||||||||||||||||||||||||||||||
Sbjct 923 TTGGGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 963
> Ahg477685 jgi|Araly1|477685|fgenesh2_kg.3__386__AT3G04250.1
Length=852
Score = 62.1 bits (33), Expect = 1e-08
Identities = 42/46 (91%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 1126 CCAC-TTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170
|||| || ||||| |||||||||||||||||||||||||||| |||
Sbjct 643 CCACATT-TGTGCCCTTATGTTCCAAGTTCAGTGCAAATCAAACAA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5