BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36210.1
Length=2505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891234 jgi|Araly1|891234|Al_scaffold_0007_3220 3264 0.0
> Ahg891234 jgi|Araly1|891234|Al_scaffold_0007_3220
Length=2031
Score = 3264 bits (1767), Expect = 0.0
Identities = 1945/2033 (96%), Gaps = 4/2033 (0%)
Strand=Plus/Plus
Query 186 ATGTCTTCTTCTTCCCCCGACGCTGCTCAGACTCCTCTAACCACCGCTCCTTATGGCTCC 245
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCATCTTCTTCCCCCGACGATGCTCAGACTCCTCTAACCACCGCTCCTTATGGCTCC 60
Query 246 TGGAAATCTCCAATCACCGCCGACATCGTTTCCGGAGCTTCAAAGCGTCTTGGCGGCACC 305
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TGGAAATCTCCGATCACCGCAGACATCGTTTCCGGAGCTTCAAAGCGTCTCGGCGGCACC 120
Query 306 GCCGTCGATTCTCATGGCCGTCTCGTCTTGCTCGAGTCTCGCCCTAACGAATCCGGGAGA 365
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCCGTCGATTCTCGTGGCCGTCTCGTCTTACTCGAGTCTCGCCCTAACGAATCCGGGAGA 180
Query 366 GGAGTTTTGGTGCTACAAGGAGAAACATCAATTGATATTACTCCAAAAGACTTCGCTGTG 425
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTTTTGGTGCTTCAAGGAGAAACACCAATTGATATTACTCCAAAAGACTTCGCTGTG 240
Query 426 AGAACTTTAACACAAGAATACGGTGGTGGTGCTTTCCAGATTTCATCAGATGATACACTT 485
|| ||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 AGGACTCTAACACAAGAATACGGTGGTGGTGCTTTCCAGATTTCATCAGACGACACACTT 300
Query 486 GTGTTCTCTAATTACAAGGATCAGCGATTGTACAAGCAAGACATTACTGATAAAGATTCA 545
|| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 301 GTTTTCTCTAATTACAAAGATCAGCGACTATACAAGCAACACATTACTGATAAAGATTCA 360
Query 546 TCTCCAAAGCCAATTACTCCAGATTATGGTA-CACCAGCTGTTACTTATGCAGATGGAGT 604
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 361 TCTCCGAAGCCAATTACTCCAGATTATGG-AGCACCAGCTGTTACTTATGCAGATGGAGT 419
Query 605 CTTTGATTCACGCTTTAACCGTTATGTTACTGTTAGGGAAGATGGTCGCCAGGATAGATC 664
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 420 CTTTGATTCACGCTTTAACCGTTACGTTGCTGTTAGGGAAGATGGTCGCGAGGATAGATC 479
Query 665 AAACCCAATTACAACAATCGTGGAGGTTAATCTAAGTGGAGAGACACTTGAAGAACCAAA 724
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAACCCAATTACGACAATTGTGGAGGTTAATCTAAGTGGAGAGACACTTGAAGAACCAAA 539
Query 725 AGTACTCGTAAGTGGCAATGATTTCTATGCATTTCCACGGTTGGATCCCAAGTGTGAGCG 784
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGTACTAGTGAGTGGCAATGATTTCTATGCATTTCCACGTTTGGATCCCAAGTGTGAGCG 599
Query 785 ATTGGCATGGATTGAATGGAGTCACCCTAATATGCCATGGGATAAAGCAGAGCTGTGGGT 844
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 600 ATTGGCATGGATTGAATGGAGTCACCCTAATATGCCTTGGGACAAAGCAGAGCTGTGGGT 659
Query 845 TGGGTACATTTCCGAGGGCGGAAATATTGATAAGCGCGTATGTGTTGCTGGTTGTGATCC 904
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 660 TGGGTACATTTCAGAGGGCGGAAAGATTGATAAACGTGTATGTGTTGCTGGTTGTGATCC 719
Query 905 CAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAGGGGAACTCTTTTTTGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAAATACGTCGAATCACCCACTGAGCCGAAGTGGTCATCAAGAGGGGAACTCTTTTTTGT 779
Query 965 AACTGACAGAAAGAATGGATGTTGGAATATTCATAAATGGATTGAGAGTACCAATGAGGT 1024
|||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AACTGACAGAGAGAACGGATTTTGGAATATTCATAAATGGATCGAGAGTACCAATGAGGT 839
Query 1025 TGTTTCTGTATATCCTCTCGAC-GGTGAGTTTGCGAAACCACTATGGATTTTCGGTACTA 1083
|||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |
Sbjct 840 TGTTTCTGTATATCCTCTCG-CTGGTGAGTTTGCGAAACCACTATGGGTTTTCGGTACAA 898
Query 1084 ACTCCTACGAGATAATCGAGTGTTCTGAAGAGAAGAACCTAATTGCATGCAGCTATAGGC 1143
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 ACTCCTACGAAATAATCGAGTGTTCTGAAGAGAAGAACATAATTGCATGCAGCTATAGGC 958
Query 1144 AGAAAGGGAAGTCATATCTAGGCATTGTAGATGATTCACAGGGATCATGTTCTCTGCTCG 1203
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 959 AGAAAGGGAAGTCATATCTAGGCATTGTGGATGATTCACAGGGTTCATGTTCTCTGCTTG 1018
Query 1204 ATATTCCTTTAACGGATTTTGACAGCATTACATTGGGAAATCAGTGCCTTTATGTTGAGG 1263
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 ATATTCCTTTAACTGATTTTGACAGCATTACATTGGGAAATCAGTGCCTTTATGTGGAGG 1078
Query 1264 GAGCATCAGCAGTTCTTCCACCATCAGTTGCCAGGGTAACACTGGATCAGCATAAGACGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 GAGCATCAGCAGTTCTTCCACCATCAGTTGCCAGGGTAACACTGGATCAGCATAAGATGA 1138
Query 1324 AAGCACTCAGTTCTGAGATTGTTTGGTCGTCGTCACCCGATGTTTTGAAGTACAAGGCTT 1383
|||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct 1139 AAGCACTCAGTTCTGAGATTGTTTGGTCTTCATCTCCCGATGTTTTGAAGTATGAGGCTT 1198
Query 1384 ACTTCAGCGTGCCAGAGTTGATTGAATTTCCAACAGAGGTTCCTGGTCAGAACGCTTATG 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCTTCAGCGTGCCAGAGTTGATTGAATTTCCAACAGAGGTTCCTGGTCAGAACGCTTATG 1258
Query 1444 CATACTTTTATCCTCCAACCAATCCGCTCTACAATGCTAGCATGGAAGAGAAACCTCCGT 1503
| |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 CTTACTTTTACCCCCCAACCAATCCGTTCTACAATGCTAGCATGGAAGAGAAACCTCCGT 1318
Query 1504 TGTTAGTGAAGAGTCATGGAGGACCTACTGCTGAATCACGTGGATCCTTAAATCTGAATA 1563
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1319 TGTTAGTGAAGAGTCACGGAGGACCTACTGCTGAATCACGTGGATCCTTAAATTTGAATA 1378
Query 1564 TCCAATACTGGACAAGTCGAGGTTGGGCATTTGTTGATGTCAATTATGGTGGAAGCACAG 1623
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCCAATACTGGACAAGTCGAGGGTGGGCATTTGTTGATGTCAATTATGGTGGAAGCACAG 1438
Query 1624 GTTATGGTCGAGAGTATCGAGAGCGGTTGTTAAGGCAGTGGGGAATAGTCGACGTTGATG 1683
|||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||
Sbjct 1439 GTTATGGTCGAGAGTATCGAGAACGGTTGTTAAGGCGGTGGGGAATTGTTGACGTTGATG 1498
Query 1684 ACTGTTGTGGCTGTGCTAAATACTTGGTATCTTCTGGCAAGGCAGATGTTAAGCGGCTCT 1743
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACTGTTGTGGCTGTGCTAAATATTTGGTATCTTCTGGCAAGGCAGATGTTAAGCGGCTCT 1558
Query 1744 GTATATCTGGCGGTTCTGCAGGAGGTTACACAACTCTTGCATCATTGGCGTTCAGGGATG 1803
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1559 GTATATCTGGAGGTTCTGCAGGAGGCTACACAACTCTTGCAGCATTGGCGTTCAGGGATG 1618
Query 1804 TTTTCAAAGCTGGAGCGTCCTTATACGGAGTGGCTGATTTAAAAATGTTGAAAGAAGAAG 1863
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1619 TTTTCAAAGCTGGAGCGTCCTTATACGGAGTGGCTGATTTAAAAATGTTGAAGGAAGAAG 1678
Query 1864 GTCATAAATTTGAATCCCGTTATATCGACAATCTTGTTGGAGATGAAAAAGATTTCTATG 1923
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1679 GTCATAAGTTTGAATCCCGTTATATCGACAATCTTGTTGGAGATGAAAAGGATTTCTATG 1738
Query 1924 AGAGATCACCAATCAATTTCGTCGATAAGTTCTCTTGTCCCATCATCCTTTTCCAAGGAC 1983
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1739 AGAGATCACCAATCAATTTCGTCGATAAGTTCTCTTGCCCCATCATCCTTTTCCAAGGAT 1798
Query 1984 TAGAAGACAAGGTTGTAACTCCAGATCAATCACGTAAAATCTATGAAGCATTAAAGAAAA 2043
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1799 TGGAAGACAAGGTTGTAACTCCAGATCAATCACGTAAAATCTATAAAGCATTAAAGGAAA 1858
Query 2044 AAGGTCTGCCTGTTGCTCTTGTCGAGTACGAAGGAGAACAACACGGTTTTCGCAAGGCGG 2103
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1859 AAGGTCTGCCTGTTGCTCTTGTTGAATATGAAGGAGAACAACACGGTTTTCGCAAGGCGG 1918
Query 2104 AAAACATCAAATACACACTTGAGCAACAGATGGTGTTCTTTGCCCGAGTGGTTGGAGGGT 2163
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1919 AAAACATCAAATACACACTTGAGCAACAGATGGTGTTCTTTGCCCGAGTCGTTGGAGGGT 1978
Query 2164 TCAAAGTTGCTGATGACATCACTCCTTTGAAAATTGACAACTTCGACACTTAG 2216
|||||||||| ||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 1979 TCAAAGTTGCAGATGACATCACTCCTTTGAGAATCGACAACTTCGACCCTTAG 2031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94425717355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5