BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36220.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891235 jgi|Araly1|891235|Al_scaffold_0007_3221 2189 0.0
> Ahg891235 jgi|Araly1|891235|Al_scaffold_0007_3221
Length=1509
Score = 2189 bits (1185), Expect = 0.0
Identities = 1398/1503 (93%), Gaps = 6/1503 (0%)
Strand=Plus/Plus
Query 19 ATGGAAGAAACCAACATTAGAGTTGTTCTCTACTCCATTTTCTCTCTCATCTTCTTGATA 78
|||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGAAAACTACATTGGAGTTGTTCTCTACTCCATTTTATCTCTCATCTTCTTGATA 60
Query 79 ATCTCTTTCAAGTTCTT-AAAACCAAAGAAACAGAATCTTCCACCGTCTCCGCCGGGATG 137
| |||| |||||||||| ||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 61 ACCTCTCTCAAGTTCTTGAAATCC-AAGAAACAGAATCTTCCGCCGTCTCCCCCGGGATG 119
Query 138 GTTGCCAATAATAGGCCATCTCCGCCTTCTGAAGCCACCCATCCACCGCACCCTCCGCTC 197
|||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 120 GTTGCCGGTAATAGGCCACCTCCGCCTACTGAAGCCACCCATCCACCGCACTCTCCGCTC 179
Query 198 CTTCTCCGAGACCCTCGACCACAACGATGGTGGCGGCGTGATGTCCCTCCGACTTGGATC 257
|||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 180 CTTCTCGGAGTCCCTCGACCGTAACGGTGGTGGCGGCGTGATGTCCCTCCGACTTGGGTC 239
Query 258 CCGTCTAGTCTACGTGGTGTCGTCACATAAGGTTGCGGCAGAGGAGTGCTTTGGCAAGAA 317
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 240 CCGTCTAGTCTACGTGGTGTCGTCACATAGGGTTGCTGCGGAGGAGTGCTTTGGCAAGAA 299
Query 318 CGACGTCGTTCTAGCTAACCGGCCACAGGTGATCATCGGAAAACATGTTGGTTATAACAA 377
||||||||||||||| |||||||| || ||||||||||||||||||||||| || |||||
Sbjct 300 CGACGTCGTTCTAGCCAACCGGCCTCAAGTGATCATCGGAAAACATGTTGGCTACAACAA 359
Query 378 TACAAACATGATCGCTGCACCTTACGGTGATCACTGGCGTAACCTCCGTCGCCTCTGCAC 437
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CACAAACATGATCGCCGCACCTTACGGTGATCACTGGCGTAACCTCCGTCGCATCTGCAC 419
Query 438 TATCGAGATCTTTTCAACACACCGCCTTAACTGCTTTCTTTATGTCCGTACCGACGAAGT 497
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 CATCGAGATCTTTTCCACTCACCGGCTTAACTGCTTTCTTTATGTCCGTACCGACGAAGT 479
Query 498 ACGTCGCCTTATAAGCCGCCTCTCTCGTCTCGCAGGAACCaaaaaaaCTGTTGTGGAATT 557
|||||||||||| |||||||||| |||| |||||||||| ||||||| ||||||||| |
Sbjct 480 ACGTCGCCTTATTAGCCGCCTCTTTCGTGTCGCAGGAACTGAAAAAACGGTTGTGGAAAT 539
Query 558 GAAACCAATGCTTATGGACTTGACATTCAACAACATAATGAGAATGATGACCGGAAAACG 617
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GAAACCAATGCTTATGGACTTGACATTCAACAATATAATGAGAATGATGACCGGAAAACG 599
Query 618 ATACTACGGTGAAGAAACAACCGATGAGGAAGAAGCAAAGCGTGTCCGTAAGTTGGTAGC 677
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 600 TTACTACGGTGAAGAAACAACCGATGAGGAAGAAGCAAAACGTGTCCGTAAGTTGGTGGC 659
Query 678 AGATGTTGGGGCTAACACGAGTTCAGGCAACGCCGTTGACTACGTCCCCATCCTCAGACT 737
|||||||| || ||||| ||||||||||||||||||||||| || || || || |||||
Sbjct 660 TGATGTTGGAGCCAACACAAGTTCAGGCAACGCCGTTGACTATGTTCCGATTCTAAGACT 719
Query 738 GTTTTCAAGTTATGA-AAATAGGGTTAAAAAGTTAGGAGAGGAGACAGATAAGTTTTTAC 796
||||||||||||||| ||| ||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 720 GTTTTCAAGTTATGAGAAA-AGGGTAAAAAAATTAGGAGAGAAGACAGATAAATTTTTAC 778
Query 797 AAGGTCTCATTGACGATAAACGTGGGCAACAAGAAACCGGTACTACAATGATCGATCATT 856
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 AAGGTCTTATTGACGATAAACGTGGACAACAAGAAACCGGTACTACAATGATCGATCATT 838
Query 857 TGCTTGTCCTCCAAAAATCTGATATTGAGTATTACACTGATCAAATCATCAAAGGCATCA 916
||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 839 TGCTTGTCCTCCAAACATCTGATACTGAGTATTACACTGATGAAATCATCAAAGGCATCA 898
Query 917 TACTGATAATGGTAATAGCAGGGACTAACACATCAGCAGTCACTCTAGAATGGGCACTTT 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 TACTGATAATGGTAATAGCAGGGACTAACACATCAGCAGTCACTCTAGAATGGGCACTCT 958
Query 977 CCAATTTGCTTAACCATCCTGACGTAATATCTAAAGCGAGAGAC-GAAATCGATAACCGG 1035
|||||||||||||||||||||| |||||| ||||| ||| || ||||||||||||| |
Sbjct 959 CCAATTTGCTTAACCATCCTGATGTAATAAGAAAAGCTAGA-ACCGAAATCGATAACCAG 1017
Query 1036 GTTGGTTTAGACCGGCTTATCGAAGAAGCAGATCTTAGCGAGCTACCATATCTAAAGAAC 1095
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 1018 GTTGGTTTAGACCGGCTTATGGAAGAATCAGATCTTAGCGAGCTACCATATCTTAAGAAC 1077
Query 1096 ATTGTCCTTGAGACCCTTAGGCTACACCCAGCTACACCATTGCTAGTCCCACACATGGCA 1155
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 ATTGTCCTCGAGACCCTTAGGTTACACCCGGCTACACCATTGCTAGTCCCACACATGGCA 1137
Query 1156 TCAGAAGATTGCAAGATAGGATCCTACGATATGCCACGTGGTACAACGTTGTTGGTGAAT 1215
||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1138 TCAGAGGATTGCAAGATAGGGTCCTACGATATGCCGCGTGGCACAACATTGTTGGTGAAT 1197
Query 1216 GCATGGGCCATACATAGGGATCCAAACACGTGGGATGATCCGGATAGCTTTAAACCAGAG 1275
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCATGGGCCATACACAGGGATCCAAACACGTGGGATGATCCGGATAGCTTTAAACCAGAG 1257
Query 1276 CGGTTTGAGAAAGAAGAGGAAGCACAAAAGCTTCTGGCGTTTGGATTAGGTAGAAGAGCG 1335
||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1258 CGGTTTGAGAAAGAAGAAGAAGCACAAAAGCTTATGGCGTTTGGATTAGGGAGAAGGGCG 1317
Query 1336 TGTCCTGGATCGGGTCTGGCCCAACGAATCGTGGGACTAGCTCTCGGGTCATTGATACAA 1395
|||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||
Sbjct 1318 TGTCCTGGATCGGGTCTGGCCCAACGGATCGTGGGGCTTGCACTCGGGTCATTGATACAA 1377
Query 1396 TGCTTTGAATGGGAGAGAGTTGGGAATGTGGAAGTGGATATGAAGGAAGGAGTTGGGAAT 1455
|| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1378 TGTTTTGAATGGGAGAGAGTTGGAAATGAGGAAGTTGATATGAAGGAAGGAGTTGGGAAT 1437
Query 1456 ACTGTACCCAAAGCGATTCCTTTGAAAGCTATTTGCAAAGCTCGTCCATTTCTACATAAG 1515
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1438 ACTGTACCCAAAGCGATTCCGTTGCAAGCCGTTTGCAAAGCTCGTCCATTTCTACATAAG 1497
Query 1516 ATT 1518
|||
Sbjct 1498 ATT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5