BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36240.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891237 jgi|Araly1|891237|Al_scaffold_0007_3223 351 3e-96
Ahg323091 jgi|Araly1|323091|fgenesh1_pm.C_scaffold_5000635 276 2e-73
> Ahg891237 jgi|Araly1|891237|Al_scaffold_0007_3223
Length=531
Score = 351 bits (190), Expect = 3e-96
Identities = 217/230 (94%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 49 ATGCCGAGACATAATGATGATGAAGCAGAAGTATGTTTAAGATGTGGAGGATTTGGACAT 108
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGCCGAGACATAATGATGAAGCAGCAGAAGTATGTTTAAGATGTGGAGAATTTGGACAT 60
Query 109 GACATGACCTTGTGCAAGTATGAGTACTCTCATGAAGATTTGAAGAATATCAAATGCTAT 168
|||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 61 GACATGACTTTGTGCAAGTATGAGTACTCTCAGGAAGATTTGAAGGATATCAAATGCTAT 120
Query 169 GTCTGTAATAGCTTAGGGCATTTATGTTGTATTGAACCTGGTCATACACAGTCATGGACT 228
|||||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 121 GTCTGTAAAAGCTTAGGCCATTTATGTTGTATTGAACCTAGTCATTCACCGTCATGGACT 180
Query 229 GTATCTTGCTACAGATGTGGTCAACTAGGTCATACTGGACTGGCAT-GTG 277
|||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 181 GTATCTTGCTACAGATGTGGTCAACTGGGTCATACTGGACTGGCATCGTG 230
Score = 235 bits (127), Expect = 3e-61
Identities = 212/250 (85%), Gaps = 18/250 (7%)
Strand=Plus/Plus
Query 409 CCTGATTCTTCGAGCGTACGCTTTCAAGAAAACACTAGGGAAGAAGAAGAAGGGCATTTT 468
||| ||||||| ||||| |||||| |||||||| ||| ||||||| | | | ||||
Sbjct 271 CCTAATTCTTCAAGCGTGTGCTTTCCAGAAAACAGTAGTGAAGAAG--G--GTG--TTTT 324
Query 469 GAGCATCAGTGCCCTGATTCTTCCAGTGTATGCTTTCAAGAAATCAGTAGGGAAGAAGGG 528
||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 325 GAGCATCAGGGCCCTAATTCTTCCAGTGTATGCTTTCAAGAAATCAGAAGGGAAGAAGGG 384
Query 529 --TTTATC---T-CA---CTGAATTCATCGAGCA-AA--AGCACTTCAAAGGGCAGAGAG 576
||| || | | | |||||||||| ||| || ||||||| |||||||| ||
Sbjct 385 TATTTGTCAAGTGAATGTCCGAATTCATCGGGCATAAGCAGCACTTTGCAGGGCAGAAAG 444
Query 577 ACTCGCCGTTTATGCTACGAATGTAAAGGAAAAGGACATATTGCTCGTGATTGCCCCAAT 636
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACTCGCCGGTTATGCTACGAATGTAAAGGAAAAGGACATATTGCTCGTGATTGCCCCAAT 504
Query 637 TCCTCACAGG 646
||||||||||
Sbjct 505 TCCTCACAGG 514
> Ahg323091 jgi|Araly1|323091|fgenesh1_pm.C_scaffold_5000635
Length=1671
Score = 276 bits (149), Expect = 2e-73
Identities = 193/214 (90%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 79 GTATGTTTAAGATGTGGAGGA-TTTGGACATGACATGACCTTGTGCAAGTATGAGTACTC 137
|||||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||
Sbjct 703 GTATGTTTAAGATGTGGA-GACTTTGGTCATGACATGATTTTGTGCAAGTATGAGTACTC 761
Query 138 TCATGAAGATTTGAAGAATATCA-AATGCTATGTCTGTAATAGCTTAGGGCATTTATGTT 196
||| |||||||||||| |||| | |||||||||||||||| ||||| || ||| |||| |
Sbjct 762 TCAGGAAGATTTGAAGGATAT-ACAATGCTATGTCTGTAAAAGCTTTGGCCATCTATGCT 820
Query 197 GTATTGAACCTGGTCATACACAGTCATGGACTGTATCTTGCTACAGATGTGGTCAACTAG 256
|| | ||||||||| || ||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 821 GTGTCGAACCTGGTAATTCACCGTCATGGGCTGTATCTTGCTACAGATGTGGTCAACTGG 880
Query 257 GTCATACTGGACTGGCATGTGGTAGACACTACGA 290
||||||||||||||||||||||||||||||||||
Sbjct 881 GTCATACTGGACTGGCATGTGGTAGACACTACGA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5