BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36250.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493662 jgi|Araly1|493662|fgenesh2_kg.7__3095__AT5G36250.1 2645 0.0
> Ahg493662 jgi|Araly1|493662|fgenesh2_kg.7__3095__AT5G36250.1
Length=1933
Score = 2645 bits (1432), Expect = 0.0
Identities = 1642/1742 (94%), Gaps = 19/1742 (1%)
Strand=Plus/Plus
Query 265 CCCTCTAA-GTCTCTC-CAATTCTTCTCCATTAGCTATAAAGTCGATTCCTTTATCACCG 322
||||| || ||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 183 CCCTC-AATGTCTCTCTC-ATTCTTCTCCA-GAGCTATAAAGTCGATTCCTTTATCACCC 239
Query 323 TTCTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGTACCCAATTTTCAATCCTGGCGATA 382
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 TTGTGAAGAATTTGGTCGAAAGTTTTGGCCTTTAGCACCCAATTTTCAATCCTGGCGATA 299
Query 383 ACTGAATTGAAAAGGGTTCCAAAAGTTACATCACCTGAAAACAACAGTGCTTTTGATTGT 442
||||||||||||||||||||||||| | |||||||||||||||| | | ||||||||||
Sbjct 300 ACTGAATTGAAAAGGGTTCCAAAAGGTCCATCACCTGAAAACAATA--G-TTTTGATTGT 356
Query 443 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTGGTGGTTTGGAGTGCTTGATAAGTTTAATCAGGGCCCTTGATATGGGGTCCTGCTTA 416
Query 503 TCATCATCTGGAGGTGGAGGAAGCAGGAGATCTCTCCATGGCTCTCCTCATGTTCCTGGT 562
|||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 417 TCATCATCTGGA---GGAGGAAGTAGGAGATCTCTTCATGGTTCTCCTCATGTTCCTGGA 473
Query 563 CCTGGGAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCGTTTGAT 622
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 474 CCTGGTAGGAGGAAGAGGCCTCCCAAGAGGAGACCTGGGTCTTGTAGTTCTTCCTTCGAT 533
Query 623 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTTTTGAATGGCTCTACA 682
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 AACACCGAGGAGCCACTTCTTCATAGGATCCCTGGAAGGATGTTCTTGAATGGCTCTACC 593
Query 683 GACACCGTGTCTCTCTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGACGCTATGATT 742
||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 594 GACACCGCCTCTCTTTTCTCTCAACAGGGCAAGAAAGGACCTAATCAGGATGCCATGATT 653
Query 743 GTTTGGGAGAATTTTGGGTCTATGGAGGACACTGTGTTTTGTGGTGTTTTTGATGGTCAT 802
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 654 GTCTGGGAGAATTTTGGGTCTATGGCGGACACTGTTTTTTGTGGTGTTTTTGATGGTCAT 713
Query 803 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGTCCGTATGGTCACATTGTTGCAAAGAGAGTGAGGGATTTGCTTCCACTCAAGTTAGGT 773
Query 863 TCTCATTTGGAGTCCTATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTTAACACT 922
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 774 TCTCACTTGGAGTCATATGTGTCCCCTGAGGAGGTTCTTAAAGAGATTAGCCTCAACACC 833
Query 923 GATGATAGAAAGATCTCAGAAGACCTTGTACATATATCTGCCAATGGAGAATCACGAGTC 982
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 834 GGTGATAGAAAGATCTCAGAAGACCTTGTGCATATATCTGCCAATGGAGAATCACGAGTC 893
Query 983 TACAATAAGGATTATGTGAAGGATCAAGATATGATTCAAATGCT-AATAGGCTCAATTGT 1041
||||||||| |||| || |||||||| ||||||||| ||| || |||||||||||||||
Sbjct 894 TACAATAAGAATTACGTAAAGGATCAGGATATGATTGAAAA-CTTAATAGGCTCAATTGT 952
Query 1042 TAAAGCCTACAGATTCATGGATAAGGAATTGAAGATGCAAGTTGATGTTGATTGTTTTTG 1101
||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 953 TAAAGCCTATAGATTTATGGATAAGGAGTTGAAGATGCAAGTGGATGTTGATTGTTTTTG 1012
Query 1102 CAGTGGAACAACTGCAGTTACCATGGTTAAGCAGGGTCAACATCTTGTTATCGGGAATAT 1161
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1013 CAGTGGAACAACTGCAGTTACTATGGTCAAGCAGGGTCAACATCTTGTTATCGGTAATAT 1072
Query 1162 CGGGGATTCAAGAGCAGTATTGGGTGTGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1221
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1073 TGGGGATTCAAGAGCAGTATTGGGTATGAGGAACAAAGACAATAAACTTGTTCCTTTTCA 1132
Query 1222 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCTGAAGCAGAAAGGATAAAGAGATGCAG 1281
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1133 ATTAACTGAAGATCTCAAACCAGATGTTCCAGCGGAAGCAGAAAGGATAAAGAGATGCAG 1192
Query 1282 AGGACGTATATTTGCTCTTCGAGATGAACCGGGAGTTGCCCGTCTGTGGCTTCCTAACCA 1341
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1193 AGGACGTATATTTGCTCTTCGAGATGAACCAGGAGTTGCTCGTCTGTGGCTTCCTAACCA 1252
Query 1342 CAACTCACCTGGTCTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1401
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAACTCACCTGGTTTAGCCATGGCACGTGCTTTTGGAGATTTTTGCCTCAAAGACTTCGG 1312
Query 1402 TCTAATTTCTGTACCTGACGTCTCCTACCGACGCCTCACTGAGAAGGATGAATTTGTTGT 1461
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1313 TCTCATTTCTGTACCTGACGTGTCCTACCGACGCCTCTCTGAGAAGGATGAATTTGTTGT 1372
Query 1462 CTTGGCAACTGATGGGATTTGGGATGCATTGACGAATGAAGAGGTTGTAAAGATAGTAGC 1521
|||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 1373 CTTGGCAACTGATGGGATTTGGGATGTATTGACGAATGAAGAGGTAGTAGAGATAGTAGC 1432
Query 1522 GAAAGCTCCAACGCGTTCCTCAGCAGGTCGAGCATTGGTGGAGGCTGCAGTGCGTAACTG 1581
||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1433 CAAAGCCCCAACACGTTCCTCAGCAGGTCGAGCCTTGGTGGAGGCTGCAGTGCGGAATTG 1492
Query 1582 GAGATGGAAGTTCCCGACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTATTCCTTGA 1641
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 GAGATGGAAGTTCCCAACTTCAAAAGTCGATGACTGTGCCGTAGTTTGCCTCTTCCTTGA 1552
Query 1642 CTCCGAACCAAACAGATTGTCAACTGCTTCTTTCTCAAAAGAAAAACACATCAACAATGG 1701
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1553 CTCCGAACCGAACAGATTGTCAACTGCTTCTTTCTCAAAGGAAAAACACATCAACAATGG 1612
Query 1702 CGTTACTGAACCTGAACCAGACACAGCATCATCATCAACTCCAGACTCAGGAACCGGATC 1761
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1613 TGTTACTGAACCGGAACCAGACACAGCATCATCATCATCTCCAGACTCAGGAACCGAATC 1672
Query 1762 GCCTGAGCTCAATGGAGTCAACAGAATCGATACACTTGTGAATCTCCCAGTATATGTCCC 1821
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1673 GCCTGAGCTCAATGGAGTCAACAGAATCGACACACTTGTGAATCTCCCAGTATATGTCCC 1732
Query 1822 AACCAAAGAGTAGGAAG-ATAGAACAGA-GCCAGGAGCTCAATGTCTCCTATGCTCTATG 1879
|||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||
Sbjct 1733 AACCAAAGAGTAGGAAACATAGAACAGATGC-AGGAGCTCAATGTCTCCTATGCTCAATG 1791
Query 1880 TTTCTATCAACAGTTACTGTTTTGGTCATTTACCTCGGGTAAAATTACTGTTACACGCCC 1939
||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1792 TTTCTGTCAACAGTTACTGTTTTGGTCATTTACCTCGGTTAAA-TTACTGTTACACGCCC 1850
Query 1940 GTGCTCGTGTGTGACTCATTGTATATATCTTCTTTTTCAAATCATTGTAATACTTTTGCT 1999
| || ||||||| || |||||||||||||||| || ||| |||||||||||||||| ||
Sbjct 1851 G--CTTGTGTGTGGCTGATTGTATATATCTTCTCTTCCAATTCATTGTAATACTTTTTCT 1908
Query 2000 AC 2001
||
Sbjct 1909 AC 1910
Score = 254 bits (137), Expect = 2e-66
Identities = 176/192 (92%), Gaps = 14/192 (7%)
Strand=Plus/Plus
Query 45 TTCCTTCCTTTTGGATCCGATTCTATCTCCACCTTCAAGCACAATATTCGACTCGGTACT 104
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 TTCCTTCCCTTTGGATCCGATTCTATCTCCACCTTCAAGCA-A-TATTCGACTCGGTACT 58
Query 105 CTCTCT-T-TCT-T-CTTCTTATTGCAAAAAGATTCTCTTTTTATCTGTTTTGTGGATAT 160
|||||| | ||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 59 CTCTCTCTCTCTCTTCTTCTTATTGCAAAAAGATTCTCTTTTTATCAGTTTTGTGGAT-- 116
Query 161 AGAGATTCTGGATAAAAACAATCATCTTTTTTCTCTCAAAAATCTCTGCTTAAGAACTGG 220
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 117 -GAGATTCTGGATAAAA-CAATCATCTTTTT-CTC--AAAAATCTCTGCTTAAGAACTGG 171
Query 221 GATTCTTCAAAA 232
||||||| ||||
Sbjct 172 GATTCTT-AAAA 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5