BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36260.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225 2187 0.0
Ahg315487 jgi|Araly1|315487|fgenesh1_pm.C_scaffold_2000520 647 0.0
Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1 93.5 5e-18
> Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225
Length=1443
Score = 2187 bits (1184), Expect = 0.0
Identities = 1359/1444 (94%), Gaps = 9/1444 (1%)
Strand=Plus/Plus
Query 163 GACGATGGATCCGAGTAGAATTTCACGCATTGTTGCGGTGGTTTTCG-TTTTGGTGATCC 221
||||||||||| | |||||||||||||||||||||||||||||| | | |||||||||
Sbjct 6 GACGATGGATCTAATTAGAATTTCACGCATTGTTGCGGTGGTTTT-GATGGTGGTGATCC 64
Query 222 AAGTTGTTTCTGGGAATTTCGTGTTTAATGTGACGCATAAGTTCGCCGGAAAAGAGAAAC 281
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 65 AAGTTGTTTCCGGGAATTTCGTATTTAATGTGACGCATAAGTTCGCCGGAAAAGAGAAAG 124
Query 282 AATTGTCTGAGCTCAAATCTCACGACAGCTTCCGTCACGCTCGTATGCTTGCGAATATCG 341
||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||
Sbjct 125 AATTGTCTGAGCTCAAATCTCACGATAGTTTTCGTCACGCTCGTATGCTTGCAAACATCG 184
Query 342 ATCTTCCTCTCGGTGGCGATAGTCGCGCCGACTCCATCGGTTTATACTTCACCAAAATCA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATCTTCCTCTCGGTGGCGATAGTCGCGCCGACTCCATCGGTTTATACTTCACCAAAATCA 244
Query 402 AGCTTGGGTCACCACCAAAGGAATATTATGTTCAAGTTGATACAGGAAGTGATATACTTT 461
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 245 AGCTTGGGTCACCACCAAAGGAATATTATGTTCAAGTTGATACTGGAAGTGACATACTTT 304
Query 462 GGGTTAATTGTGCACCATGTCCCAAGTGTCCTGTGAAAACTGATCTCGGTATACCGTTAT 521
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 305 GGGTTAATTGTGCACCGTGTCCCAAGTGTCCTGTGAAAACTGATCTCGGTATACCATTAT 364
Query 522 CATTATATGACTCTAAAACTTCTTCGACATCGAAGAATGTTGGCTGTGAAGATGATTTCT 581
|||| |||||||||||| |||||||||| |||||||| ||||| |||||||||| |||||
Sbjct 365 CATTGTATGACTCTAAAGCTTCTTCGACTTCGAAGAACGTTGGATGTGAAGATGCTTTCT 424
Query 582 GTTCGTTCATTATGCAATCCGAGACTTGTGGGGCAAAGAAGCCATGTAGTTATCATGTAG 641
||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 425 GTTCGTTTATAATGCAATCGGAGACTTGTGGGGCGAAGAAGCCATGTAGTTATCATGTAG 484
Query 642 TGTATGGAGATGGAAGTACAAGTGATGGAGATTTTATAAAGGATAACATTACTTTAGAAC 701
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 485 TGTATGGAGATGGAAGTACAAGTGATGGAGATTTTGTGAAGGATAACATTACTTTGGATC 544
Query 702 AAGTGACTGGAAATCTTCGAACCGCGCCACTTGCGCAGGAAGTTGTATTCGGGTGTGGAA 761
|||||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||
Sbjct 545 AAGTGACTGGAAATCTTCGAACTGCACCCCTTGCGCAAGAAGTTGTATTTGGGTGTGGAA 604
Query 762 AAAATCAGTCAGGGCAGCTTGGACAAACCGACTCAGCGGTTGACGGTATTATGGGCTTCG 821
|||||||||| ||||||||||||||||| || ||||||||||| || || ||||||||||
Sbjct 605 AAAATCAGTCTGGGCAGCTTGGACAAACTGAGTCAGCGGTTGATGGAATCATGGGCTTCG 664
Query 822 GACAATCAAATACCTC-GATCATTTCGCAACTAGCTGCCGGGGGGAGTACAAAGAGAATA 880
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 665 GACAATCAAATACCTCCG-TCATTTCGCAACTAGCTGCCGGGGGGAGTGTGAAGAGAATA 723
Query 881 TTTTCACATTGTTTGGATAATATGAATGGAGGTGGGATTTTTGCTGTTGGTGAAGTGGAA 940
||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 724 TTTTCACATTGCTTGGATAATATGAATGGAGGTGGAATTTTTGCTATTGGGGAAGTGGAA 783
Query 941 TCACCAGTAGTGAAAACAACTCCTATAGTTCCTAATCAGGTACATTACAATGTCATTTTA 1000
|| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 784 TCTCCAGTAGTGAAAACAACTCCTTTGGTTCCTAATCAGGTACATTACAACGTCATTTTA 843
Query 1001 AAGGGAATGGATGTGGATGGTGACCCTATTGACCTTCCACCAAGTCTAGCTAGTACTAAC 1060
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 844 AAGGGAATGGATGTGGATGGTGAACCTATTGACCTTCCACCAAGTCTAGCTAGTACTAAC 903
Query 1061 GGTGATGGAGGAACGATAATCGATAGTGGTACAACTTTAGCATACTTACCACAGAATTTG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 904 GGTGATGGAGGAACGATAATCGATAGTGGTACAACTTTAGCATACTTACCACAGAATCTC 963
Query 1121 TATAACTCACTAATCGAAAAGATTACTGCTAAACAACAGGTGAAACTACACATGGTACAG 1180
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TACAACTCACTAATTGAAAAGATTACTGCTAAACAACAGGTGAAACTACACATGGTACAG 1023
Query 1181 GAAACTTTTGCCTGTTTCAGTTTCACTTCAAACACAGATAAAGCGTTTCCCGTGGTCAAT 1240
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1024 GAAACTTTTGCGTGTTTCAGTTTCACTTCAAACACAGATAAAGCGTTTCCGGTAGTCAAT 1083
Query 1241 CTTCATTTCGAAGACTCACTGAAACTGAGTGTGTATCCGCATGACTATCTTTTCTCACTT 1300
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1084 CTTCATTTCGAGGACTCACTGAAACTCTCTGTTTATCCGCATGACTATCTTTTCTCACTT 1143
Query 1301 CGTGAAGACATGTATTGCTTTGGTTGGCAATCTGGTGGAATGACGACTCAGGACGGAGCT 1360
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1144 CGTGAAGATATGTATTGCTTTGGTTGGCAATCTGGTGGAATGACGACGCAGGACGGAGCC 1203
Query 1361 GATGTAATCCTTTTGGGAGATTTGGTGCTTTCAAACAAGTTAGTAGTATACGATTTGGAG 1420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1204 GATGTAATCCTTTTGGGAGATTTGGTGCTTTCAAACAAGTTAGTAGTATACGATCTGGAG 1263
Query 1421 AATGAGGTCATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTCAAAGATGGA 1480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1264 AATGAGGTCATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTGAAAGATGGA 1323
Query 1481 TCAGGAGCGGCTTAC-CAACTCGGAGCAGAAAATCTCATATCGGCGGCTTCTTCGGTTAT 1539
|| |||||||||||| || ||||||||||| |||||||||||||| |||||| || ||
Sbjct 1324 TCGGGAGCGGCTTACTCA-CTCGGAGCAGATAATCTCATATCGGC---TTCTTCAGTGAT 1379
Query 1540 GAACGGAACACTTGTAACGTTATTGTCCATACTAATTTGGGTTTTCCATTCTTTTACTTC 1599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 GAACGGAACACTTGTAACGTTATTGTCGATACTAATTTGGGTTTTCCATTCTTTTACTTC 1439
Query 1600 ATAG 1603
||||
Sbjct 1440 ATAG 1443
> Ahg315487 jgi|Araly1|315487|fgenesh1_pm.C_scaffold_2000520
Length=1422
Score = 647 bits (350), Expect = 0.0
Identities = 1016/1326 (77%), Gaps = 91/1326 (7%)
Strand=Plus/Plus
Query 203 GTTTTCGT-TTTGGTGATCCAAGTTGTTTCTGGGAATTTCGTGTTTAATGTGAC-GCATA 260
|||||||| || |||| | || ||| || || |||||||||||||| || || || |
Sbjct 37 GTTTTCGTAATT-GTGAACGAATTTGCATCAGGCAATTTCGTGTTTAAGGT-ACAACACA 94
Query 261 AGTTCGCCGGAAAAGAGAAACAATTGTCT-GAGC---TCAAATCTCACGACA-GCTTCCG 315
||||||| || |||||| || || | || |||| |||| ||||| |||| || |||
Sbjct 95 AGTTCGCAGGGAAAGAG-AAGAA--G-CTCGAGCATTTCAAGTCTCATGACACGC-GCCG 149
Query 316 TCACGCTCGTATGCTTGCGAATATCGATCTTCCTCTCGGTGGCGATAGTCGCGCCGACTC 375
||| |||| ||||| || || ||||| ||||| || || || || |||| |||||
Sbjct 150 CCACTCTCGGATGCTCGCTTCCATTGATCTCCCTCTTGGCGGAGACAGCCGCGTAGACTC 209
Query 376 CATCGGTTTATACTTCACCAAAATCAAGCTTGGGTCACCACCAAAGGAATATTATGTTCA 435
|||| ||||||||||| ||||||||||| ||||| ||||||||||||||| |||| ||
Sbjct 210 TGTCGGATTATACTTCACTAAAATCAAGCTCGGGTCGCCACCAAAGGAATATCATGTACA 269
Query 436 AGTTGATACAGGAAGTGATATACTTTGGGTTAATTGTGCA--CCATGTCCC-AAGTGTCC 492
|||||||||||||||||||||||||||||| ||||| || || ||||| || |||||
Sbjct 270 AGTTGATACAGGAAGTGATATACTTTGGGTCAATTG--CAAGCCGTGTCCAGAA-TGTCC 326
Query 493 -TGTGAAAACTGATCTCGG-TATACCGTT-ATCATTATAT-GACTCTAAAA-CTTCTTCG 547
| ||||||| || | | | | || || ||| || | | ||| | || ||||||||
Sbjct 327 CTC-GAAAACTAATTT-GAATTT-CCATTTATCGTTGT-TCGACG-TGAATGCTTCTTCG 381
Query 548 ACATCGAAGAATGTTGGCTGTGAAGATGATTTCTGTTCGTTCATTAT-GCAATCCGAGA- 605
|| || ||||| ||||| ||||| |||||||| || || |||||| | |||||| || |
Sbjct 382 ACTTCAAAGAAGGTTGGTTGTGATGATGATTTTTGCTCTTTCATT-TCGCAATCGGATAG 440
Query 606 CTTGTGGGGCAAA-GAAGCCATGTAGTTATCATGTAGTGTATG-GAGATG-GAAGTACAA 662
|| | | | | |||||||||||| | || |||| | |||| || ||||||
Sbjct 441 CT-GCCAACCCGCTGTTGG-ATGTAGTTATCACATTGTCTATGCG-GATGAGA-GTACAA 496
Query 663 GTGATGG-AGATTTTATAAAGGATAACATTA-CTTTAGAACAAGTGACTGGAAATCTTCG 720
|||| || | | ||||||| ||| || ||| || |||||||||| |||||| ||||||
Sbjct 497 GTGAAGGTA-ACTTTATAAGGGACAAG-TTAACTCTAGAACAAGTTACTGGAGATCTTCA 554
Query 721 AACCGCG-CCACTTGCG-CAGGAAGTTGTATTCGGGTGTGGAAAAAATCAGTCAGGGCAG 778
||| | | ||||||| | || |||||||||||||||||||||| |||| || || ||
Sbjct 555 AACTG-GACCACTTG-GTCAAGAAGTTGTATTCGGGTGTGGAAGTGATCAATCTGGACAA 612
Query 779 CTTGGACAA-ACCGACTCAGCGGTTGACGGTATTATGGGCTTCGGACAATCAAATACCTC 837
||||| || | |||||||| ||||| ||| ||||||| || |||||||||||||||||
Sbjct 613 CTTGGG-AAGAGTGACTCAGCAGTTGATGGTGTTATGGGTTTTGGACAATCAAATACCTC 671
Query 838 -GATCATTTCGCAACTAGCTGCCGGGGG-GAGTAC-AAAGAGAATATTTTCACATTGTTT 894
| || |||| |||||||||||| ||| || | | ||| ||| | ||||| ||||| ||
Sbjct 672 TGTTC-TTTCACAACTAGCTGCCACGGGCGA-TGCGAAA-AGAGTTTTTTCGCATTGCTT 728
Query 895 GGATAATATGAATGGAGGTGGGATTTTTGCTGTTGGTGAAGTGGAATCACCAGTAGTGAA 954
||||||| | || ||||||||||||||||||||||||| ||||| || ||| ||| ||
Sbjct 729 GGATAATGTTAAAGGAGGTGGGATTTTTGCTGTTGGTGTTGTGGATTCTCCAAAAGTTAA 788
Query 955 AACAACTCCTATAGTTCCTAATCAGGTACATTACAATGTCATTTTAAAGGGAATGGATGT 1014
|||||| ||||| || ||||||||| | ||||||||||| || || | ||||||||||||
Sbjct 789 AACAACCCCTATGGTACCTAATCAGATGCATTACAATGTAATGTTGATGGGAATGGATGT 848
Query 1015 GGATGG---TGACCCTATTGACCTTCCACCAAGTCTAGCTAGTACTAACGGTGATGGAGG 1071
|||||| || |||| | ||||||||||||||| | | || | | || | |||||
Sbjct 849 GGATGGAACTG-CCCT-T-GACCTTCCACCAAGT--A--T--TA-TGA-GGA-ACGGAGG 896
Query 1072 AACGATAATCGATAGTGGTACAACTTTAGCATACTTACCACAGAAT-TTGTATAACTCAC 1130
||| || | ||||||||||||||||| || ||||| ||| || | || ||| |||| |
Sbjct 897 AACCATTGTTGATAGTGGTACAACTTTGGCTTACTTTCCAAAGGTTCTT-TATGACTCCC 955
Query 1131 TAATCGAAAAGATTACT-GCTAAACAACAGGTGAAACTACACATGGTACAGGAAACTTTT 1189
|||| |||| |||| || ||| |||| || ||||| ||||| ||| |||| || ||
Sbjct 956 TAATAGAAACGATT-CTTGCTCGTCAACCTGTAAAACTTCACATAGTAGAGGACACCTT- 1013
Query 1190 GCC--TGTTTCAG-TTTCACTTCAAACACAGATAAAGCGTTTCC-CGTGGTCAA-TCTTC 1244
|| |||||||| ||| | | |||| ||| ||||| || | | | || | ||
Sbjct 1014 -CCAATGTTTCAGCTTT-AGTGAAAACGTGGATGTGGCGTTCCCACCAG-T-AAGTTTTG 1069
Query 1245 A-TTTCGAAGACTCACTGAAACTGAGTGTGTATCCGCATGACTATCTTTTCTCACTTCGT 1303
| ||| || ||||| | ||||| | || ||||||||||| ||||||||| ||||| |
Sbjct 1070 AGTTT-GAGGACTCTGTCAAACTAACCGTTTATCCGCATGATTATCTTTTCACACTT-GA 1127
Query 1304 GAA-GACATGTATTGCTTTGGTTGGCAATCTGGTGGAATGACGACTCAG-GACGGAGCTG 1361
||| || |||| ||||||||||||||| |||||||| |||| ||| | || || | |
Sbjct 1128 GAAAGAGTTGTACTGCTTTGGTTGGCAAGCTGGTGGACTGACAACTG-GTGAAAGAACAG 1186
Query 1362 ATGTAATCCTTTTGGGAGATTTGGTGCTTTCAAACAAGTTAGTAGTATACGATTTGGAGA 1421
| || || || || ||||| |||||||| || ||||||||||||||||||||| |||| |
Sbjct 1187 AAGTGATTCTCTTAGGAGACTTGGTGCTCTCGAACAAGTTAGTAGTATACGATCTGGAAA 1246
Query 1422 ATGAGGTCATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTCAAAGATGGAT 1481
| ||||| || |||||||| || ||||||||||| |||||||||||| | ||||| ||||
Sbjct 1247 ACGAGGTGATCGGATGGGCAGATCACAACTGTTCATCAAGCATCAAAATAAAAGACGGAT 1306
Query 1482 CAGGAG 1487
| ||||
Sbjct 1307 CGGGAG 1312
> Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1
Length=1695
Score = 93.5 bits (50), Expect = 5e-18
Identities = 89/108 (82%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 1370 CTTTTGGGAGATTTGGTGCTTTCAAACAAG-TTAGTAGTATACGATTTGGAGAATGAGGT 1428
||||||||||||||||||||||||||||| || || | |||||| | || ||| || |
Sbjct 1353 CTTTTGGGAGATTTGGTGCTTTCAAACAAACTT-GTTCTCTACGATCTCGAAAATCAGCT 1411
Query 1429 CATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTCAAAGA 1476
|||||||||| | || ||||||| || |||||||| ||||| |||||
Sbjct 1412 CATTGGATGGACCGAGTACAACTGCTCATCAAGCATAAAAGTAAAAGA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5