BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36270.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg947274 jgi|Araly1|947274|scaffold_703503.1 937 0.0 > Ahg947274 jgi|Araly1|947274|scaffold_703503.1 Length=699 Score = 937 bits (507), Expect = 0.0 Identities = 606/655 (93%), Gaps = 2/655 (0%) Strand=Plus/Plus Query 1 ATGGGCATCGAAGTCTGCGTGAAGGCCGCATCAGGTGCACCTGATGTTCTCGGTGACTGC 60 ||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 25 ATGGGGATTGAAGTCTGCGTGAAGGCCGCTTCAGGTGCACCTGATGTTCTTGGTGATTGC 84 Query 61 CCTTTCGGTCAAAGGATACTTCTCACTCTCGAGGATAAGAAACTTCCTTACAAAACTCAT 120 ||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 85 CCTTTTAGTCAAAAGATTCTTCTCACTCTCGAGGAGAAGAAGCTTCCTTACAAAACTCAT 144 Query 121 CTCATCGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 CTCATTGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 204 Query 181 CCATTGGTGAAGTTCGATGA-AGACGAAAATTGGGTGGCTGATTCCGACCTTATAGTGGG 239 |||||| |||||||||| || | | || | |||||||||||||| || || |||||||| Sbjct 205 CCATTGATGAAGTTCGACGACA-ATGACGAGTGGGTGGCTGATTCTGATCTCATAGTGGG 263 Query 240 AATCATCGAGGAGAAATATCCGGAGCCTTCTCTCGTGACGTTTCCTCCTGAGTTTGCATC 299 |||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||| || Sbjct 264 AATCATCGAGGAGAAATATCCGGACCCTTCCCTCGTGACGTTTCCTCCTGAATATGCCTC 323 Query 300 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCCAA 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 324 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCGAA 383 Query 360 TGACGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTAGACCATCACCTCAAGAC 419 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 384 TGATGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTGGACCATCACCTCAGGAC 443 Query 420 TCACGTTGGTCCTTTCGTGGCGGGAGATAAAGTAACGGTCGTGGATTTGAGCCTAGCACC 479 ||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||| || Sbjct 444 TCACGTTGGTCCTTTTGTGGCTGGCGATAAAGTCACGGCCGTGGATTTGAGCCTAGCGCC 503 Query 480 AAAGCTTTACCATCTAGAGACTACGTTAGGACATTTCATGGATTGGTGTGTCCCTGAGAG 539 |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| Sbjct 504 AAAGCTTTACCATCTAGAGACTACCTTAGGACATTTCAAGGATTGGTATGTCCCTGAGAG 563 Query 540 TCTAACTAATGTCCGTGACTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 599 |||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||| Sbjct 564 TCTAACCAATGTTCGAAATTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 623 Query 600 TAAGGCTGCCAAAGAATATCTGATTGCAAGTTGGGCTCCTAAGCTCGACGTGTGA 654 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 624 TAAGGCTGCCAAAGAATATGTGATTGCGGGTTGGGCTCCTAAGCTCGACGTGTGA 678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5