BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36270.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947274 jgi|Araly1|947274|scaffold_703503.1 937 0.0
> Ahg947274 jgi|Araly1|947274|scaffold_703503.1
Length=699
Score = 937 bits (507), Expect = 0.0
Identities = 606/655 (93%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 1 ATGGGCATCGAAGTCTGCGTGAAGGCCGCATCAGGTGCACCTGATGTTCTCGGTGACTGC 60
||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 25 ATGGGGATTGAAGTCTGCGTGAAGGCCGCTTCAGGTGCACCTGATGTTCTTGGTGATTGC 84
Query 61 CCTTTCGGTCAAAGGATACTTCTCACTCTCGAGGATAAGAAACTTCCTTACAAAACTCAT 120
||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 85 CCTTTTAGTCAAAAGATTCTTCTCACTCTCGAGGAGAAGAAGCTTCCTTACAAAACTCAT 144
Query 121 CTCATCGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CTCATTGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 204
Query 181 CCATTGGTGAAGTTCGATGA-AGACGAAAATTGGGTGGCTGATTCCGACCTTATAGTGGG 239
|||||| |||||||||| || | | || | |||||||||||||| || || ||||||||
Sbjct 205 CCATTGATGAAGTTCGACGACA-ATGACGAGTGGGTGGCTGATTCTGATCTCATAGTGGG 263
Query 240 AATCATCGAGGAGAAATATCCGGAGCCTTCTCTCGTGACGTTTCCTCCTGAGTTTGCATC 299
|||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||| ||
Sbjct 264 AATCATCGAGGAGAAATATCCGGACCCTTCCCTCGTGACGTTTCCTCCTGAATATGCCTC 323
Query 300 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCCAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 324 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCGAA 383
Query 360 TGACGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTAGACCATCACCTCAAGAC 419
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 384 TGATGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTGGACCATCACCTCAGGAC 443
Query 420 TCACGTTGGTCCTTTCGTGGCGGGAGATAAAGTAACGGTCGTGGATTTGAGCCTAGCACC 479
||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||| ||
Sbjct 444 TCACGTTGGTCCTTTTGTGGCTGGCGATAAAGTCACGGCCGTGGATTTGAGCCTAGCGCC 503
Query 480 AAAGCTTTACCATCTAGAGACTACGTTAGGACATTTCATGGATTGGTGTGTCCCTGAGAG 539
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 504 AAAGCTTTACCATCTAGAGACTACCTTAGGACATTTCAAGGATTGGTATGTCCCTGAGAG 563
Query 540 TCTAACTAATGTCCGTGACTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 599
|||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TCTAACCAATGTTCGAAATTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 623
Query 600 TAAGGCTGCCAAAGAATATCTGATTGCAAGTTGGGCTCCTAAGCTCGACGTGTGA 654
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 624 TAAGGCTGCCAAAGAATATGTGATTGCGGGTTGGGCTCCTAAGCTCGACGTGTGA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5