BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36290.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493666 jgi|Araly1|493666|fgenesh2_kg.7__3099__AT5G36290.1 1705 0.0
Ahg906657 jgi|Araly1|906657|Al_scaffold_0003_3785 409 3e-113
Ahg900103 jgi|Araly1|900103|Al_scaffold_0004_753 346 2e-94
Ahg924298 jgi|Araly1|924298|scaffold_105579.1 329 2e-89
Ahg951273 jgi|Araly1|951273|scaffold_803160.1 294 9e-79
Ahg917464 jgi|Araly1|917464|Al_scaffold_0008_2215 272 4e-72
Ahg937115 jgi|Araly1|937115|scaffold_501306.1 239 4e-62
> Ahg493666 jgi|Araly1|493666|fgenesh2_kg.7__3099__AT5G36290.1
Length=1201
Score = 1705 bits (923), Expect = 0.0
Identities = 1142/1238 (92%), Gaps = 53/1238 (4%)
Strand=Plus/Plus
Query 1 GTGTTAATTTGATTAATTCCATTACATCTTCAAAACCGTACAGA----TCTCTGTTTCGG 56
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
Sbjct 1 GTGTTAATTTGATTAATTCCATTATAGCTTCAAAACCGTACAGATCTCTCTCTGTTTCCG 60
Query 57 AGCAGCTTCTTCACACGCTC-AAGCTCACCGATCGATTCTTCCAATGCTCTTCTAATTCA 115
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGCAG---CTTCACACGCTCAAAGCTCACCGATCGATTCTTCCAATGCTCTTCTAAATCA 117
Query 116 TCTGCAAAACTCTCAG-ATCACTCATGGGTTTGATTTCAAACCCTACCCGTTTGATTCTC 174
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 TCTGCAAAACTCTC-GCATCACTCATGGGTTTGATTTCAAACCCTACCCGTTTGGTTCTC 176
Query 175 GTCG---CCACCA---TCTTCTTC--C-TCGTTTCTTCAATCTCCGGTCAGGATTCTGTC 225
|||| |||||| |||||||| | |||||||||||||||||| ||||||||| ||
Sbjct 177 GTCGCCACCACCATCTTCTTCTTCATCTTCGTTTCTTCAATCTCCGCTCAGGATTCGGTG 236
Query 226 GTTGAGAACAATGAGAGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGA 285
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTTGAAAACAATGGGAAACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGA 296
Query 286 ATGGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGT 345
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGATTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGT 356
Query 346 TTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATGCTTTGTTTTCGAGTTTC 405
|| ||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 357 TTAAATCTTGACCTTGATGCTACTGGTCCTAGTGTCTTTGATGCATTGTTTTCGAGTTTC 416
Query 406 TCGATGATACTTGTCACCGAGATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCT 465
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 417 TCGATGATACTTGTCACCGAGATTGGGGATGAAACGTTTATAATAGCGGCATTGATGGCT 476
Query 466 ATGCGACATCCTAAAGCTACTGTTTTATCTGGTGCACTCTCAGCTTTGTTTGTTATGACT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATGCGACATCCTAAAGCTACTGTTTTATCTGGTGCACTCTCAGCTTTGTTTGTTATGACT 536
Query 526 ATACTTTCTACTGGACTTGGTAGGATAGTGCCAAACTTGATATCGAGGAAGCACACCAAT 585
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 ATACTTTCGACTGGACTTGGTAGGATAGTGCCAAACTTGATATCAAGGAAGCACACCAAC 596
Query 586 AGTGCTGCTACAGTGCTCTATGCATTTTTTGGTTTGCGACTACTCTACATTGCTTGGAGG 645
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGTGCTGCTACGGTTCTCTATGCATTTTTTGGTTTGCGACTACTCTACATTGCTTGGAGG 656
Query 646 TCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAGTTGAAGAGAAGCTCGAG 705
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 657 TCTACTGATTCAAAGTCAAACCAGAAGAAGGAAATGGAGGAAGTTGAAGAGAAGCTCGAG 716
Query 706 TCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGATTTTGTACCCCAATATTT 765
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 TCAGGCCAAGGGAAGACACCCTTCCGTCGCTTATTCTCAAGATTTTGTACCCCAATATTT 776
Query 766 CTGGAGTCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACA 825
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 777 CTGGAGTCCTTCATCTTAACCTTTCTAGCTGAATGGGGCGACCGTAGCCAGATCGCTACA 836
Query 826 ATAGCTTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACAC 885
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 837 ATAGCTTTGGCGACTCACAAGAACGCCATAGGAGTAGCCATCGGGGCAAGTATTGGACAC 896
Query 886 ACTGTGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAA 945
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACTGTGTGTACTTCACTAGCGGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAA 956
Query 946 CGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTC 1005
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CGCACAGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTC 1016
Query 1006 TATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAAATGGGTGTTAGAGACAATT-TCTAA 1064
||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||| |
Sbjct 1017 TATCCTCCACTGTAGTAAATGTGCTTCTTTCAAAAATGGGTGTTAGAGACA-TTGTCTGA 1075
Query 1065 GTAAAGTTTCAAttttttttttgattttaatttaagtttgatattttgtttAATATCAAT 1124
||||||||| || | | ||||||| ||||||||||||| |||
Sbjct 1076 GTAAAGTTT---TT---------A----A------GTTTGAT-TTTTGTTTAATATTAAT 1112
Query 1125 GGCCAAAATGGCCAAACCAAAGAATCCAACGCCTATGCTTTTACAATTTACTTTCTTGAA 1184
||||||| ||||| |||||||||||| |||||||||||| |||||| ||||||
Sbjct 1113 GGCCAAA----CCAAA-----GAATCCAACGCCAATGCTTTTACAACTTACTTGCTTGAA 1163
Query 1185 GTGTAACAAATCTAATTAAATAAAATTTTGCAGTATCC 1222
|||||||||||||||||||||||| ||||| | |||||
Sbjct 1164 GTGTAACAAATCTAATTAAATAAATTTTTGAACTATCC 1201
> Ahg906657 jgi|Araly1|906657|Al_scaffold_0003_3785
Length=366
Score = 409 bits (221), Expect = 3e-113
Identities = 335/386 (87%), Gaps = 24/386 (6%)
Strand=Plus/Plus
Query 730 CGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAGTCCTTCATCTTAACCTTT 789
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1 CGTCGCTTATTCTCAAGATTTTGTACCCCAATATTTCTAGAGTCCTTCAACTTAACCTTT 60
Query 790 CTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTTTGGCGACTCACAAGAAC 849
|||||||||||||||||||||||| ||||||||||||||| || | | | | |
Sbjct 61 CTAGCTGAATGGGGTGACCGTAGCAAGATCGCTACAATAG-ATT---G--T--C--G-A- 108
Query 850 GCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAG 907
|||||| || |||| ||||||| ||||||||| || | |||||||||||| ||| |
Sbjct 109 --TATAGGATTGTCCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGG 166
Query 908 TTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAG 967
|||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||
Sbjct 167 TTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAG 226
Query 968 GCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGT 1027
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 227 GCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGC 286
Query 1028 GCTTCTTTCGAAAATGGGTGTTAGAGACAATTTCTAAGTAAAGTTTCAAtttt-tttttt 1086
|||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||
Sbjct 287 GCTTCTTTCGAAAATGGGTGTTGGAGACATTTTCTAA-TAAAGTTTCAATTTTGTTTTTT 345
Query 1087 gattt-taatttaagtttgatatttt 1111
||| || || || |||||| ||||
Sbjct 346 --TTTGTA-TTAAA-TTTGAT-TTTT 366
> Ahg900103 jgi|Araly1|900103|Al_scaffold_0004_753
Length=294
Score = 346 bits (187), Expect = 2e-94
Identities = 259/294 (88%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 730 CGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAGTCCTTCATCTTAACCTTT 789
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1 CGTCGCTTATTCTCAAGATTTTGTACCCCAATATTTCTAGAGTCCTTCAACTTAACCTTT 60
Query 790 CTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTTTGGCGACTCACAAG-AA 848
|||||||||||||||||||||||| ||||||||||||||| ||| | | |||
Sbjct 61 CTAGCTGAATGGGGTGACCGTAGCAAGATCGCTACAATAGATTTATCTTTTTTGAAGTGT 120
Query 849 CGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCA 906
|| |||||| || |||| ||||||| ||||||||| || | |||||||||||| |||
Sbjct 121 CGATATAGGATTGTCCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCG 180
Query 907 GTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGA 966
||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||
Sbjct 181 GTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGA 240
Query 967 GGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAG 1020
||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTATAG 294
> Ahg924298 jgi|Araly1|924298|scaffold_105579.1
Length=343
Score = 329 bits (178), Expect = 2e-89
Identities = 233/259 (90%), Gaps = 6/259 (2%)
Strand=Plus/Plus
Query 832 TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACACT--G 889
|||||||||||||||||||| |||||| || |||| ||||||| ||||||||| | | |
Sbjct 85 TTGGCGACTCACAAGAACGCTATAGGATTGTCCATCGGGGCAACTATTGGACA-AATGCG 143
Query 890 -TGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGT 948
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 144 TTGTGTACTTCACCAGCGGTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGG 203
Query 949 ACGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTAT 1008
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 204 ACGGTTGCAACTGTTGGAGGCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTAT 263
Query 1009 CCTCCATTGTAGTAAATGTGCTTCTTTCGAAAATGGGTGTTAGAGACAATT-TCTAAGTA 1067
|||||| | ||| |||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct 264 CCTCCACTACAGTCAATGCGCTTCTTTCGAAAATGGGTGTTGGAGACA-TTGTCTAAGTA 322
Query 1068 AAGTTTCAAtttttttttt 1086
|||||||||||||||||||
Sbjct 323 AAGTTTCAATTTTTTTTTT 341
Score = 119 bits (64), Expect = 6e-26
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747
||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 1 GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 60
Query 748 TTTTGTACCCCAATATTTCTGGAGT 772
|||||||||||||||||||| ||||
Sbjct 61 TTTTGTACCCCAATATTTCTAGAGT 85
> Ahg951273 jgi|Araly1|951273|scaffold_803160.1
Length=322
Score = 294 bits (159), Expect = 9e-79
Identities = 205/227 (90%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 863 CCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAGTTGTTGGAGGAAG 920
|||| ||||||| ||||||||| || | |||||||||||| ||| ||||||||||||||
Sbjct 95 CCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGGTTGTTGGAGGAAG 154
Query 921 CATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCT 980
||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||| |
Sbjct 155 CATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAGGCTTGCTCTTCTT 214
Query 981 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAA 1040
|||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 215 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGCGCTTCTTTCGAAA 274
Query 1041 ATGGGTGTTAGAGACAATTTCTAAGTAAAGTTTCAAtttt-tttttt 1086
||||||||| |||||| ||| ||||||||||||||||||| ||||||
Sbjct 275 ATGGGTGTTGGAGACATTTTGTAAGTAAAGTTTCAATTTTGTTTTTT 321
Score = 117 bits (63), Expect = 2e-25
Identities = 77/84 (92%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747
||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 1 GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 60
Query 748 TTTTGTACCCCAATATTTCTGGAG 771
|||||||||||||||||||| |||
Sbjct 61 TTTTGTACCCCAATATTTCTAGAG 84
> Ahg917464 jgi|Araly1|917464|Al_scaffold_0008_2215
Length=381
Score = 272 bits (147), Expect = 4e-72
Identities = 188/208 (90%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 863 CCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAGTTGTTGGAGGAAG 920
|||| ||||||| ||||||||| || | |||||||||||| ||| ||||||||||||||
Sbjct 174 CCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGGTTGTTGGAGGAAG 233
Query 921 CATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCT 980
||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||| |
Sbjct 234 CATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAGGCTTGCTCTTCTT 293
Query 981 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAA 1040
|||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 294 CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGCGCTTCTTTCGAAA 353
Query 1041 ATGGGTGTTAGAGACAATTTCTAAGTAA 1068
||||||||| |||||| |||||||||||
Sbjct 354 ATGGGTGTTGGAGACATTTTCTAAGTAA 381
Score = 111 bits (60), Expect = 9e-24
Identities = 76/84 (90%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747
||| ||||||||||| ||| | | |||||||||||| |||||||||| ||||||||||||
Sbjct 80 GTTTAAGAGAAGCTCAAGTTATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 139
Query 748 TTTTGTACCCCAATATTTCTGGAG 771
|||||||||||||||||||| |||
Sbjct 140 TTTTGTACCCCAATATTTCTAGAG 163
> Ahg937115 jgi|Araly1|937115|scaffold_501306.1
Length=292
Score = 239 bits (129), Expect = 4e-62
Identities = 187/214 (87%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 832 TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG- 889
|||||||||||||||||||| |||||| || ||| | || ||||||||| || |
Sbjct 85 TTGGCGACTCACAAGAACGCTATAGGATTGTCCA-T-----AACTATTGGACAAACGCGT 138
Query 890 TGTGTACTTCACTAGCAGTTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTA 949
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 139 TGTGTACTTCACCAGCGGTTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGA 198
Query 950 CGGTCGCAACTGTTGGAGGCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATC 1009
|||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 199 CGGTTGCAACTGTTGGAGGCTTGCTTTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATC 258
Query 1010 CTCCATTGTAGTAAATGTGCTTCTTTCGAAAATG 1043
||||| | |||||||| ||||||||||||||||
Sbjct 259 CTCCACTACAGTAAATGCGCTTCTTTCGAAAATG 292
Score = 119 bits (64), Expect = 6e-26
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 688 GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA 747
||| ||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 1 GTTTAAGAGAAGCTCAAGTCATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA 60
Query 748 TTTTGTACCCCAATATTTCTGGAGT 772
|||||||||||||||||||| ||||
Sbjct 61 TTTTGTACCCCAATATTTCTAGAGT 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5