BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36300.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330235 jgi|Araly1|330235|fgenesh1_pm.C_scaffold_7002462 584 3e-166
Ahg947283 jgi|Araly1|947283|scaffold_703512.1 381 5e-105
> Ahg330235 jgi|Araly1|330235|fgenesh1_pm.C_scaffold_7002462
Length=1347
Score = 584 bits (316), Expect = 3e-166
Identities = 393/429 (92%), Gaps = 9/429 (2%)
Strand=Plus/Plus
Query 420 ACAGTTTGGGAGTTTCGAGGATATTGGGGAACTTGTGGGTAAGCTAAAGTCTCAAGGTGT 479
||||||||| |||||| | ||| | | |||||||||||||||||| ||||| || |||||
Sbjct 879 ACAGTTTGGAAGTTTCCAAGATGTCGAGGAACTTGTGGGTAAGCTCAAGTCACAGGGTGT 938
Query 480 TGCTCCTTCTGCTAATTTATTTTGCACTTTGGCAAATGCATATGCTCAGCAGGGACTATG 539
|||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 939 CGCTCCTTCAGCCAATCTGTTTTGTACTTTGGCAAATGCATATGCTCAGCAGGGACTGTA 998
Query 540 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAATGAGGGGATTGAACCAAACTTGAT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 999 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAACGAGGGGATTGAACCAAACTTGAT 1058
Query 600 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 1118
Query 660 TATTTATCATCATATTAAAGAAACCGTATGGATTCACCCC-GATGTGGTTACCTATAGTA 718
||||||||| ||||||||||||| || | ||||||||| |||||||||||||||||||
Sbjct 1119 TATTTATCACCATATTAAAGAAAGCG---G-ATTCACCCCCGATGTGGTTACCTATAGTA 1174
Query 719 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAATGGTATGTTCCAGAAATATTC 778
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1175 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAAAGGT-T---CCAGAAATATTC 1230
Query 779 AGGGAAATGGAAGCTTCTGGGTGTACAACAGATCGGAAAGCAAAACAATTATTGCAAAAT 838
|||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1231 AGGGAAATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACTATTGCAAAAT 1290
Query 839 GCTATTATG 847
||| |||||
Sbjct 1291 GCTTTTATG 1299
Score = 335 bits (181), Expect = 4e-91
Identities = 214/230 (93%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 198 AGAGGTATCGTGGCGTGTGGTTAACGAAATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 257
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 366 AGAGGAATCGTGGCGTGTGGTTAATGAGATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 425
Query 258 TGTTTATGGGAAGATTATTCGTATTTATAGAGATAATGGTATGTGGAAGAAAGCTTTAGG 317
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 426 TGTTTATGGGAAGATTATTCGTATTTATAGAGACAATGGGATGTGGAAGAAAGCTTTAGG 485
Query 318 GATTGTAGAAGAGATTAGGGAGATTGGTTTGCCTATGGATGTGGAGATATACAATAGTGT 377
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 486 GATTGTAGACGAGATTAGGGAGATTGGTTTGCCAATGGATGTGGAGATATACAATAGCAT 545
Query 378 TATTGATACGTTTGGTAAGTATGGAGAGTTGGATGAAGAGTTACA-GTTT 426
||| ||||| ||||||||||| || ||||||||||||| |||| | ||||
Sbjct 546 TATCGATACATTTGGTAAGTACGGGGAGTTGGATGAAGCGTTAGATGTTT 595
Score = 257 bits (139), Expect = 8e-68
Identities = 180/200 (90%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCTCCTCGCCGAAATCCATTCTCTAGGTTCACGTCCTGATCCTCTTTCCTACGTT 60
||||||||| ||||||||||| ||||||| ||||| | ||| ||||||||||||||||||
Sbjct 55 ATGTCTCTCGTCGCCGAAATCGATTCTCTCGGTTCCCATCCCGATCCTCTTTCCTACGTT 114
Query 61 AGTTTTATTGAAACACTCGCTAGTCTCAGAAGGACTCTCGAAGCTGATGCTTTGTTTCAT 120
||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 115 AGTTTGATTGAAACACTCGCTAGTCTGGGAAGGACACTTGAAGCTGATGCTTTGTTTCAA 174
Query 121 GAAGTAGTTAGATTCATG-ATTTATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGGT 179
||||||||| ||||| | || ||||||||||||||||||||||||||||||||||| |
Sbjct 175 GAAGTAGTTCGATTC-CGAATCAATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGCT 233
Query 180 TAGTCGATATTTGAGAAAAG 199
|||| |||||||||||||||
Sbjct 234 TAGTGGATATTTGAGAAAAG 253
> Ahg947283 jgi|Araly1|947283|scaffold_703512.1
Length=307
Score = 381 bits (206), Expect = 5e-105
Identities = 293/330 (89%), Gaps = 26/330 (8%)
Strand=Plus/Plus
Query 545 AGACAGTAAAGGTGCTCAAGATGATGGAGAATGAGGGGATTGAACCAAACTTGATTATGC 604
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGACAGTAAAGGTGCTCAAGATGATGGAGAACGAGGGGATTGAACCAAACTTGATTATGT 60
Query 605 TGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATCTATTT 664
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TGAATGTTTTGATTAATGCTTTTGGAACTGTTGGGAAGCACATGGAAGCTCTATCTATTT 120
Query 665 ATCATCATATTAAAGAAACCGTATGGATTCA-CCCCGATGTGGTTACCTATAGTACACTT 723
|||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATCACCATATTAAAGAAA--G--CGGATTCACCCCCGATGTGGTTACCTATAGTACACTT 176
Query 724 ATGAAAGCATTCACTCGAGCAAAGAAGTATGAAATGGTATGTTCCAGAAATATTCAGGGA 783
|||||||||||||||||||||||||||||||||| | | | | |
Sbjct 177 ATGAAAGCATTCACTCGAGCAAAGAAGTATGAAA----A-G-----G---------G--A 215
Query 784 AATGGAAGCTTCTGGGTGTACAACAGATCGGAAAGCAAAACAATTATTGCAAAATGCTAT 843
||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||| |
Sbjct 216 AATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACTATTGCAAAATGCTTT 275
Query 844 TATGGTTCTTGATAAAAGACATTAAGTATT 873
||||||||||||||||||||||||||||||
Sbjct 276 TATGGTTCTTGATAAAAGACATTAAGTATT 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5