BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G36680.1

Length=1002
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947287 jgi|Araly1|947287|scaffold_703516.1                        566    1e-160


> Ahg947287 jgi|Araly1|947287|scaffold_703516.1
Length=677

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 349/370 (94%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  80   AGATGAAACCAACAGGATGGGATTCTCAATCAGAGAATAAATTTGCAGAAAGAAGACACA  139
            ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct  187  AGATGAAACCAACCGGATGGGATTCTCAATCAGAGAATAAATTCGCAGACAGAAAACACA  246

Query  140  ACAATAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAGCCAAGGAAAAACATG  199
            | || ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct  247  AAAACAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAACTAAGAAAAAACATG  306

Query  200  TCATACAATATCAAGAATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCGG  259
            ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  307  TCATACAATCTCAAGGATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCAG  366

Query  260  GTACCCATATTGCGGGAATGAAAG-TAGTAGAAAAACATAATTACAGAGGCGTAGAAGCA  318
            |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct  367  GTACCCATATTGCGGGAATG-AAGATAGTAGGAAAACATAATTACAGAGGCGTAGAAGCA  425

Query  319  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  485

Query  379  GTAGCCAGAGCATTCAGTGGTGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  438
            |||||||  || | || || ||||||||||||||||||||||||||||||||||||||||
Sbjct  486  GTAGCCACTGCCTCCAATGATGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  545

Query  439  CAACTATTTG  448
            ||||||||||
Sbjct  546  CAACTATTTG  555


 Score =  124 bits (67),  Expect = 1e-27
 Identities = 79/85 (93%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  1    ATGGATATCTTTGTGAGTTTTGTTGTGTTTATCCTTTCAGTGTTATCTGTTGAATCTACT  60
            |||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||||||
Sbjct  21   ATGGATATTTTTGTGAGTTTTGTTGTGTTTATAGTTTCAATGTTATCTGTCGAATCTACT  80

Query  61   ATACATATGAAATCCATCAAGATGA  85
            ||||||||||||||||||||| |||
Sbjct  81   ATACATATGAAATCCATCAAGTTGA  105



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37246089909


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5