BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36700.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493675 jgi|Araly1|493675|fgenesh2_kg.7__3108__AT5G36790.2 1829 0.0
> Ahg493675 jgi|Araly1|493675|fgenesh2_kg.7__3108__AT5G36790.2
Length=1354
Score = 1829 bits (990), Expect = 0.0
Identities = 1087/1135 (96%), Gaps = 1/1135 (0%)
Strand=Plus/Plus
Query 18 aaaaaataccaaaagaagcggaaacagagaaaaagagag-aaaaaTGCTGAGTAGATCAG 76
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAAAATACCAAAAGAAGCGAAAACAGAGAAAAAGAGAGAAAAAATGCTGAGTAGATCAG 60
Query 77 TTGCTTCTGCTGTTACACCGGTCTCATCTTCTTCTCTCTTACCAAACTCAAAGCCTATCT 136
|||| ||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 61 TTGCATCTGCTGTTTCACCGGTCTCTTCTTCTTCTCTCTTACAAAACTCAAAACCTATCT 120
Query 137 TCTGTCTGAAAACCCTCTCCGGTTATCGTTCTTCTTCTTTCTGTGGCGGCTGTATTCGTA 196
||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 121 TCTGTCTCAAAACCCTCTCCGGTTATCGTTCTTCTTCTTTCTGCGGCGGCTCCATTCGTA 180
Query 197 AAATCAACCATAAGCCTCTTCGAATGACGAGTTCCAATATTACACCAAGAGCTATGGCCA 256
|||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 181 AAATCAACCATAAGCCTCTTCGAATGACTAGTTCTAATATGACTCCAAGAGCTATGGCCA 240
Query 257 CACAACAGCTTGAGAACGCTGATCAGCTCATTGATTCTGTCGAAACTTTTATCTTCGATT 316
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 CGCAACAGCTTGAAAACGCTGATCAGCTCATTGATTCTGTCGAGACTTTTATCTTCGATT 300
Query 317 GTGATGGTGTGATTTGGAAGGGAGATAAATTGATAGAGGGAGTTCCTGAAACTCTTGATA 376
|||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GTGATGGTCAGATCTGGAAGGGAGATAAATTGATTGAGGGAGTTCCTGAAACTCTTGATA 360
Query 377 TGCTTCGTGCCAAGGGAAAGAGATTGGTTTTTGTGACAAACAACTCAACAAAATCTAGGA 436
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 361 TGCTTCGTGCCAAGGGAAAGAGGTTGGTTTTTGTCACAAACAACTCAACAAAATCTAGGA 420
Query 437 AACAGTATGGAAAAAAGTTCGAGACTCTTGGCCTGAATGTTAACGAGGAGGAGATATTTG 496
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 AACAGTATGGAAAAAAGTTTGAGACTCTTGGTCTGAATGTTAACGAGGAGGAGATATTTG 480
Query 497 CTTCATCTTTTGCTGCTGCTGCATACTTGCAGTCTATTAATTTCCCAAAAGATAAGAAGG 556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCATCTTTTGCTGCAGCTGCATACTTGCAGTCTATTAATTTCCCAAAAGATAAGAAGG 540
Query 557 TCTATGTGATTGGTGAGGAAGGTATCTTGAAAGAGCTAGAGCTTGCTGGTTTTCAATACC 616
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TATACGTGATTGGTGAGGAAGGTATCTTGAAAGAGCTCGAGCTTGCTGGTTTTCAATACC 600
Query 617 TTGGAGGTCCGGATGATGGTAAAAGACAGATTGAATTGAAGCCAGGTTTTCTAATGGAGC 676
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTGGAGGTCCGGATGATGGTAAAAGACAGATTGAATTGAAGCCAGGATTTCTAATGGAGC 660
Query 677 ATGATCATGATGTTGGAGCTGTTGTGGTTGGATTTGATCGCTATTTCAACTACTACAAAA 736
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGAACATGATGTGGGAGCTGTTGTGGTTGGATTTGATCGCTATTTCAACTACTACAAAA 720
Query 737 TTCAGTATGGAACACTCTGTATCCGTGAAAACCCGGGGTGTCTTTTCATCGCTACAAACC 796
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 721 TTCAGTATGGAACACTATGTATCCGCGAAAACCCGGGGTGTCTTTTCATTGCTACAAACC 780
Query 797 GAGATGCTGTCACTCACCTTACTGATGCTCAAGAATGGGCAGGTGGTGGCTCTATGGTTG 856
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGATGCAGTCACTCACCTTACCGATGCTCAAGAATGGGCAGGTGGTGGCTCTATGGTTG 840
Query 857 GTGCTCTTGTTGGATCCACTCAACGTGAGCCTCTTGTTGTTGGAAAACCCTCAACTTTTA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGCTCTTGTTGGATCCACTCAACGTGAGCCTCTTGTTGTTGGAAAACCCTCAACTTTTA 900
Query 917 TGATGGACTATTTAGCAGACAAATTTGGAATCCAAAAGTCACAGATATGCATGGTTGGTG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 TGATGGACTATTTAGCAGACAAATTTGGAATCCAAAAGTCACAGATATGCATGGTGGGTG 960
Query 977 ATAGATTGGACACTGACATTTTATTCGGGCAGAATGGCGGTTGTAAGACTCTACTCGTCC 1036
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 961 ATAGATTGGACACTGATATTTTATTCGGGCAGAATGGCGGATGTAAAACTCTGCTCGTCC 1020
Query 1037 TCTCGGGTGTTACTTCAATCTCTATGTTGGAAAGCCCTGAGAACAAGATACAACCAGATT 1096
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCGGGTGTCACTTCAATCTCAATGTTGGAAAGCCCTGAGAACAAGATACAACCAGATT 1080
Query 1097 TCTACACCAGCAAGATCTCCGATTTTCTGTCTCCGAAAGCCGCAACTGTATAATC 1151
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1081 TCTACACCAGCAAAATCTCCGATTTTCTGTCCCCGAAAGCAGCAACTGTATAATC 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5