BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36730.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001 254 1e-66
Ahg929516 jgi|Araly1|929516|scaffold_301973.1 165 7e-40
Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 143 3e-33
Ahg930559 jgi|Araly1|930559|scaffold_303016.1 100 2e-20
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 100 2e-20
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 100 2e-20
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 97.1 3e-19
Ahg929515 jgi|Araly1|929515|scaffold_301972.1 93.5 3e-18
Ahg930371 jgi|Araly1|930371|scaffold_302828.1 84.2 2e-15
Ahg930556 jgi|Araly1|930556|scaffold_303013.1 75.0 1e-12
Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 75.0 1e-12
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 75.0 1e-12
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 73.1 4e-12
Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462 69.4 6e-11
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 62.1 1e-08
> Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001
Length=924
Score = 254 bits (137), Expect = 1e-66
Identities = 483/640 (75%), Gaps = 64/640 (10%)
Strand=Plus/Plus
Query 548 TTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATATTTCACTTGTGACTGG 606
||||||| ||||| |||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 272 TTGAAATTTACAACTTTAACTCTGATTCATGGAAGGTTGTT-GATTTCACTCCTGAC-GG 329
Query 607 AAATTA-CCG-TTTTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC 664
| || || |||| | || || |||||||||||||||||||||||||||||||||
Sbjct 330 GGA-TAGGCGCTTTTTTGTACATGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTA 388
Query 665 GAGAG-ATGT-A--TAT-ACACG-G-ACCAAGAA-T-A-G-A-T-C-TCCCTGA-TTTCT 709
||||| |||| | ||| | | | | | |||||| | | | | | | | || | |||||
Sbjct 389 GAGAGTATGTGAGGTATGA-AGGTGTA-CAAGAAGTAATGAATTACGTGGCT-AGTTTCT 445
Query 710 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCAC- 768
|||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||
Sbjct 446 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTGCCTTTTGACA 505
Query 769 TCTCGTTGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTT 827
| | || | | |||| ||||| |||| | |||||||||||||||||||||| ||||||
Sbjct 506 TTT--TTATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTT 563
Query 828 ATTTCAGGACTCAA--AAACGTTGATCCTAGAGGTATGGATAACG-ACTAAGATTGAGCC 884
| ||| | | | ||| |||| | ||| ||||| | | | | ||||||||||||
Sbjct 564 ACATCACCAATGGATGAAA--TTGAGGATGGAGATATGGGTTA-GTAATAAGATTGAGCC 620
Query 885 TAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAGAAGTGAATATGAGTCCACTCAC-TG 943
|||||| || || ||||| | ||| |||| ||| || |||||||| ||| | || |
Sbjct 621 TAATGCAGTGTCGTGGAG-A--AAGTTGTT---AGAGGTTAATATGAGACCATT-ACCTC 673
Query 944 GTTTTCAGTTTAA-TCGT-AGCTTTGGGAGTTTCTTCATTGTTGAGGAGAAAAATGTCGT 1001
| | || |||| || | | | | |||||||||||||||| ||| |||| || |||||
Sbjct 674 GATATC-GTTTTCGTCTTGACCAT-GGGAGTTTCTTCATTGACGAGAAGAATAAGGTCGT 731
Query 1002 TGTGGTTCCT--ATTAAAG--GAGG-GCATTTCAAAC--GAAACCTAGCTTACATCATTG 1054
|||||||| | || |||| || | | | |||| | ||| ||| ||| ||||||
Sbjct 732 TGTGGTTC-TGGAT-AAAGACGAAGAG-ACGG-AAACCCGCAACTTAGTTTATTTCATTG 787
Query 1055 GAAAGGATGAATACTTCAAAGAAGTGGATCTTGGAGTGCC-A-AGTTCATATATATATTT 1112
|| |||||| ||| |||||||||||||| || |||| | | || || | | | ||
Sbjct 788 GAGAGGATGGATATTTCAAAGAAGTGGAACTGGGAGAATCTAGAGG-CA-A-A-A-ATGG 842
Query 1113 TTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGTACAA 1152
||| ||| |||| |||||||||||||||||| ||| |||
Sbjct 843 TTCTCCATTTGTGAGCTCTTATGTTCCAAGTTCAGTGCAA 882
> Ahg929516 jgi|Araly1|929516|scaffold_301973.1
Length=1193
Score = 165 bits (89), Expect = 7e-40
Identities = 703/982 (72%), Gaps = 112/982 (11%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCCAATCTTCCA-AGAGATTTGTTGGAGGAGGT-ACTCTCT-AGGGTTCCG 57
||||||||||| ||||| || || |||||| | || ||||| | ||| | || ||||||
Sbjct 21 ATGGCGATGTCGGATCTTACACAG-GATTTGGTAGAAGAGGTGA-TCT-TGAGAGTTCCG 77
Query 58 GTAA-AGTCT-ATAGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTA---ACCT 112
||| | ||| ||| ||||||| |||| ||||| ||||| |||||| ||||| |
Sbjct 78 CTAACA-TCTCATA-AAGCAGTGCGATCTACTTGCAAAAACTGGAACACTTTATCGAAAA 135
Query 113 ACGGTCA-GAGCTT--CACGAAGAAGCTCTATGGTAAAACAATG-GCAACAAAGGAAA-- 166
|| | | |||||| | | | || | || || ||| ||| | ||| | || |||
Sbjct 136 AC-TTGATGAGCTTGAAAGGGATAAAC-CT-TGCCAAAGCAA-GAGCAGC-AA-CAAAGC 189
Query 167 AGGAGTTTCTGGTGGTCATGACT-ATGGATTTGGAGGTTTATTTAATGAGGGTCAATCTC 225
||||||||||| || ||| | |||||||| |||||||| ||||||| | |||||
Sbjct 190 AGGAGTTTCTGACAATCGTGA-TAATGGATTTTAAGGTTTATCTAATGAGCTTTGATCTC 248
Query 226 CATGGAATTCATAAAGATGATAACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTC 285
| |||| ||| | | |||| ||| | || ||| |||||| | || | ||| ||||||
Sbjct 249 CGTGGACTTC--ACA-ATGACAACGACGTGGAATTATCTATAAAGCGAGAAGGTAAACTG 305
Query 286 ATTAGGCTAAATGATGATCGAGTTCGAGT-CGATGATATATGTAAAGTCTTTCACTGCGA 344
||||| ||||| ||| | | || |||| || || ||| || |||||| ||||| |
Sbjct 306 ATTAGCCTAAACGAT-A-C-AGAGGGAGTCCG-TG---TATCTAGAGTCTTGCACTG-TA 357
Query 345 -CGGTTTATTGTTATGCATCA-C---TATTGGGAT-C-AGGCTTGTGGTTTGTAATCCTT 397
|||||| ||||||||||||| | | | || | |||||||||||||| || ||||
Sbjct 358 GCGGTTTGTTGTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGAACCCTT 417
Query 398 ATTGTGGGCAAACAAGGTGTATCAAAACC-AGAAGAGATTACCATATAACCG-ACAATTA 455
|| ||| ||||||||||| ||| |||| ||| | |||||| | || | |||| ||
Sbjct 418 GTTCTGGACAAACAAGGTGGATC-GAACCTAGAGGTTCTTACCACA-AAAAGAACAACTA 475
Query 456 CGCTCTTGGACACGAGAAGATGAAGAACAGCCCACT-TCGTAA-CTACAAAATCTTG-G- 511
||||| ||| || | |||||||||||| | | ||| || |||||| || ||| |
Sbjct 476 TGCTCTCGGATAC--G-AGATGAAGAACAAATC-TTGTCG-AAGCTACAAGATTTTGAGA 530
Query 512 TGTTT-CATG-ATA-AATCCTTCCTCCAA-AATTC-----T-TG-GTTTGAAATCTACAA 560
| ||| ||| || | | || | || |||| | || |||| ||||||||||
Sbjct 531 TATTTGGATGCGTATGA-CATTAGTGTAAGGATTCTATATTGTGAGTTTCAAATCTACAA 589
Query 561 TTTTAACTCTGATTCATGGAAGG-TTTTATATTTCACTTGT-GACTGGAAAT-TACCGTT 617
|||| | ||| | |||||||||| | || | |||| | | |||| ||| || | ||
Sbjct 590 TTTTGATTCTAACTCATGGAAGGCTGTT-CAGGCCACTCCTCG-CTGG-AATATA-CATT 645
Query 618 -TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAGATGTATA 676
|| ||||| || |||||||||||||||||||||||||||||||||| | | | |
Sbjct 646 ATTATCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC-A-A-A-G---- 697
Query 677 TACACGGACCAAGAATAGATCTCCCTGATTTCTTGA-TTTGTTTTGATTTTACAACAGAG 735
|||| | | || | ||| | | |||||| | ||||||||||||||||| | |||
Sbjct 698 --CACGAATCTAGGAG-GATATA---G-TTTCTT-ACTTTGTTTTGATTTTACAGCTGAG 749
Query 736 AGATTTGGACCGCGTCTTCATCTGCCG-TTTCACTCTCGTTGT-GTTGATACTGTGACTC 793
||||||||||||| ||| | | |||| ||| | | |||||| | ||||| |||||||
Sbjct 750 AGATTTGGACCGCCTCTGCCTATGCCTATTTT-C-CACGTTGTTGAAGATACCGTGACTC 807
Query 794 TCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTCAG-GAC-TCAAAAACGTTGAT 851
| ||||||| ||||| ||||| || || ||||||||| || ||| | | || |
Sbjct 808 TATCTAGTGTCAGAGATGAGCAACTCGCAGTGTTATTTAAGCGACGTGGTGCA--TT-A- 863
Query 852 CCTA-G-AGGTATGGATAACG-ACTAAGATTGAGCCTA-ATGCGGTCTCATGGAGCAGCA 907
| || | || ||||||| ||| | | |||||| ||| | | | ||| || ||||| ||||
Sbjct 864 CATATGGAGATATGGATTACGTA-TGAGATTGGGCCCAGA-GAGGTGTCGTGGAGGAGCA 921
Query 908 AGGTGTTCTTAGAAGTGAATAT 929
|| ||||||||| ||||||||
Sbjct 922 AGTTGTTCTTAGCGGTGAATAT 943
> Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386
Length=1329
Score = 143 bits (77), Expect = 3e-33
Identities = 344/464 (74%), Gaps = 54/464 (12%)
Strand=Plus/Plus
Query 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCACTCTCGT 774
||||||||||| |||| |||||||||| || | ||| ||| ||||||| |||| | |||
Sbjct 679 TGTTTTGATTTCACAAGAGAGAGATTTAGATCACGTTTTCCTCTGCCGATTCAG-C-CGT 736
Query 775 -TGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTC 832
| | || ||||| |||| ||| |||||||||||||||||||||| ||||| |||||||
Sbjct 737 ATATTTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTC 796
Query 833 AG-GACTCAAAA--A-C-GTTGATCCTAGA-GGT-AT--GGATAACGACTAAGA-TTGAG 882
|| | ||||| | | | | ||| ||| || || ||||||| || || | |||||
Sbjct 797 AGCG-CTCAAGATTATCAGA-GATGG-AGATGGAGATCTGGATAACCACGAA-ACTTGAG 852
Query 883 CCTAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAG-AAGTGAATAT-GAGTCCACTCA 940
|| || ||||| || |||| ||||||||||||||||| || || |||| | | || |||
Sbjct 853 CCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAA-TGGATATTG-G-CCT-TCA 908
Query 941 CTGGTTTTCAGTTT-AA-TC-GTAGCTTTGGGAGTTTCTTCATTGTTGAGGAGAA-AAAT 996
| || |||||| || | | |||| | |||||||| || | ||||||||| |||
Sbjct 909 AT--TT--CAGTTTCAAGTTAG-AGCT--GCAAGTTTCTTTATCGATGAGGAGAAGAAA- 960
Query 997 GTCGTTGTGGTTCCT-ATTAAAG-GAGGGCAT-TTCAA-----ACG-A-AACCTAGCTTA 1046
|| ||||||||| | || |||| || || || | || | ||| |||||||
Sbjct 961 GTTGTTGTGGTTTTTGAT-AAAGAGAAAAAATATTTAGTGTCCACTCACAACATAGCTTA 1019
Query 1047 CATCATTGGAAAGGATGAATAC-TTCAAAGAAGTGGATCTTGGAGTGCCAAGTTCATATA 1105
|||| ||||| |||||| | || || || |||||||||||||| | | | || | |
Sbjct 1020 CATCTTTGGAGAGGATGGA-ACCTTGGAACAAGTGGATCTTGGATTATCT-G--CAGACA 1075
Query 1106 TATATTT-TTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGT 1148
|| ||| || |||| |||||||| ||||||||||||||||||
Sbjct 1076 AAT-TTTGTTATCCACTTGTGTGCTGTTATGTTCCAAGTTTAGT 1118
> Ahg930559 jgi|Araly1|930559|scaffold_303016.1
Length=1149
Score = 100 bits (54), Expect = 2e-20
Identities = 176/232 (76%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 6 GATGTCCAATCTTCCAAGAGATTTGTTG-GAGGAGGTACTCTCTAGGGTTCCGGT-AAAG 63
||||||||||||||| || |||||| | |||||||| |||| ||| ||||| | | |
Sbjct 30 GATGTCCAATCTTCCCAGCGATTTG-GGCGAGGAGGTGCTCTGTAGAATTCCGTTGACA- 87
Query 64 TCTAT-AGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTAACCTACGGTCAGAG 122
||| | || | ||| |||| ||||| ||||| |||||| ||||| | | ||| ||||
Sbjct 88 TCTCTGAG-AAAAGTCCGATCTACTTGCAAAAAGTGGAACACTTTATTCAAAGGTGAGAG 146
Query 123 CTTCACGAAGAAGCT--CTATGGT-A--AA--ACAA-TGGCAACAAAGGAAAAGGAGTTT 174
||| |||||||| | || |||| | || | || | ||| ||| |||||| ||||||
Sbjct 147 CTTTGCGAAGAAG-TACCT-TGGTGATCAAGCAAAAGTAGCAGCAACGGAAAAAGAGTTT 204
Query 175 CTGGTGGTCATGACT-ATGGA-TTTGGAGGTTTATTTAATGAGGGTCAATCT 224
|| ||||||||| | ||||| ||| | ||||||||| ||| | ||||||||
Sbjct 205 ATGATGGTCATGA-TGATGGATTTTAG-GGTTTATTTGATGCGCGTCAATCT 254
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 100 bits (54), Expect = 2e-20
Identities = 98/118 (83%), Gaps = 7/118 (6%)
Strand=Plus/Plus
Query 1046 ACATCATTGGAAAGGATGAATAC-TTCAAAGAAGTGGATCTTGGAGTGCCAAGTTCATAT 1104
||||| | ||| ||| || |||| || |||||||||||||| |||| || | | | |
Sbjct 1019 ACATCGTGGGAGAGGCTGGATACGTT-AAAGAAGTGGATCTAGGAGAACC-TGATGACA- 1075
Query 1105 ATATA-TTTTTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAA 1161
| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 A-ATACTTTTT-CCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAA 1131
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 100 bits (54), Expect = 2e-20
Identities = 172/227 (76%), Gaps = 16/227 (7%)
Strand=Plus/Plus
Query 6 GATGTCCAATCTTCCAAGAGATTTGTTGGAGGAGGTACTCTCTAGGGTTCCGGT-AAAGT 64
|||||||||||||||||||||||||| ||||||||| |||| ||| ||||| | | | |
Sbjct 79 GATGTCCAATCTTCCAAGAGATTTGTCGGAGGAGGTGCTCTGTAGAATTCCGTTGACA-T 137
Query 65 CTATAGCA-G-CAGTGAGATCCACTTGTAAAAATTGGAACTCTTTAACCTACGGTCAGAG 122
|| | | | | | || |||| ||||| ||||| |||| | ||||| || | || |||
Sbjct 138 CTCT-G-AGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAG 195
Query 123 CTTCACGAAGAAGC-TCTATGGTAAAACAATGGCAACA-AAGGAAAAGGAGTTTC-TGGT 179
||| | ||||||| || || | || ||| | | || || | ||||||| ||| ||||
Sbjct 196 CTTTGCAAAGAAGCACCT-TGCTCAAGCAAAAGTAGCAGAA-GCAAAGGAG-TTCATGGT 252
Query 180 GGTCATGACT-ATGGA-TTTGGAGGTTTATTTAATGAGGGTCAATCT 224
|||||||| | | | | ||| | ||||||||| ||||| ||||||||
Sbjct 253 GGTCATGA-TGAAGAATTTTAG-GGTTTATTTGATGAGAGTCAATCT 297
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 97.1 bits (52), Expect = 3e-19
Identities = 100/122 (82%), Gaps = 8/122 (7%)
Strand=Plus/Plus
Query 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTT-CATCTGCCGTTTCACTCTC- 772
|||||||||||||||||||||||||||||||| ||| || | ||||| ||||||| |||
Sbjct 719 TGTTTTGATTTTACAACAGAGAGATTTGGACCACGT-TTGCCTCTGCTGTTTCACCCTCC 777
Query 773 --GT--T-GTGTTGATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTT 827
|| | || |||| ||||||||||| || | |||||||| ||| |||| || |||||
Sbjct 778 ATGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGTGTT 837
Query 828 AT 829
||
Sbjct 838 AT 839
> Ahg929515 jgi|Araly1|929515|scaffold_301972.1
Length=943
Score = 93.5 bits (50), Expect = 3e-18
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 546 GTTTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATAT-TTCACTTGTGAC 603
|||||| ||||||||| || ||||| | ||||||||| || ||| || || ||| | | |
Sbjct 494 GTTTGAGATCTACAATCTTGACTCTAACTCATGGAAGATTCTTA-ATGTT-ACTCGCGTC 551
Query 604 TGGAA-ATTACCGTT-TTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTG 661
|||| | |||| || || ||||| || |||||||||||||||||||||||||||||||
Sbjct 552 GGGAAGA-TACC-TTATTATCAACGTGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTG 609
> Ahg930371 jgi|Araly1|930371|scaffold_302828.1
Length=984
Score = 84.2 bits (45), Expect = 2e-15
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
||||||||||||||||||||||||||||||||||| || | | | | |||||||||
Sbjct 285 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTTGTG 343
Query 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATC 420
||||| || || |||||||||||||| |||| |||
Sbjct 344 GTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATC 379
> Ahg930556 jgi|Araly1|930556|scaffold_303013.1
Length=272
Score = 75.0 bits (40), Expect = 1e-12
Identities = 137/181 (76%), Gaps = 17/181 (9%)
Strand=Plus/Plus
Query 247 AACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTCATTAGGCTAAATGATGATCGA 306
||||| ||| |||||| ||| | || |||||||||| ||||| ||| | ||| || |
Sbjct 72 AACAACGTTGAATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGAT--TC-A 128
Query 307 GTTCG-AGTCGATGATATATGTAAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCA 364
||| | ||| |||| || | | ||| | ||||||||||||||||||||||||||||||
Sbjct 129 GTT-GAAGTAGATG-TA-A-CTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA 183
Query 365 CTATTGGG-AT-C-AGGCTT-GTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTAT 419
||| | | | | | || ||||||||||| || |||| |||| ||||| |||| ||
Sbjct 184 CTAAAGACTACACTAAG-TTCGTGGTTTGTAACCCGTATT-TGGGGCAAACCCGGTGGAT 241
Query 420 C 420
|
Sbjct 242 C 242
> Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945
Length=981
Score = 75.0 bits (40), Expect = 1e-12
Identities = 83/103 (81%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 329 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACT-ATTGGGATC---AGGCTTGTG 384
||||||||||||||||||||||||||||||||||| || | | | | ||||| ||
Sbjct 221 AAGTCTTTCACTGCGACGGTTTATTGTTATGCATC-CTGAAAGACAACCCTAGGCTCGTT 279
Query 385 GTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATCAAAACCA 427
|||| ||| || |||||||||||| || |||| ||| || |||
Sbjct 280 GTTTTTAACCCGTATTGTGGGCAACCACGGTGGATCGAAGCCA 322
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 75.0 bits (40), Expect = 1e-12
Identities = 121/157 (77%), Gaps = 18/157 (11%)
Strand=Plus/Plus
Query 323 TATGTAAAGTCTTTCACTGCGACGGTTTATTGTTATGC--A-TCACT-ATTGG---GA-T 374
||| |||| ||||||||||||||||||||||||||||| | ||| || | || |
Sbjct 977 TATCTAAAATCTTTCACTGCGACGGTTTATTGTTATGCGTAATCAAAGAT-GACACGAAT 1035
Query 375 CAGGCT-TGTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTATCAAAACCAGA-AG 431
|| || | |||| || |||||||||| |||| ||||| ||||| ||| || ||||| ||
Sbjct 1036 AAG-CTCT-TGGTCTGGAATCCTTATT-TGGGGCAAACGAGGTGGATCCAACCCAGACAG 1092
Query 432 AGATTAC-CATATAACCGACAATTACGCTCTTGGACA 467
|| || | || || | |||| ||| |||||||||||
Sbjct 1093 AGTTTCCACAGATTA--GACAGTTATGCTCTTGGACA 1127
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 73.1 bits (39), Expect = 4e-12
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTT 765
||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335
> Ahg318446 jgi|Araly1|318446|fgenesh1_pm.C_scaffold_3001462
Length=918
Score = 69.4 bits (37), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 631 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAG-ATGT 673
||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 388 GTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAGAGTATGT 431
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 62.1 bits (33), Expect = 1e-08
Identities = 73/91 (80%), Gaps = 7/91 (8%)
Strand=Plus/Plus
Query 335 TTCACTGCGACGGTTTATTGTTATGCATCACTATTGGG-AT-C-AGGCTT-GTGGTTTGT 390
||||||||||||||||||||||||||||||||| | | | | | || |||||||||
Sbjct 251 TTCACTGCGACGGTTTATTGTTATGCATCACTAAAGACTACACTAAG-TTCGTGGTTTGT 309
Query 391 AATCCTTATTGTGGG-CAAACAAGGTGTATC 420
|| || |||| |||| ||||| |||| |||
Sbjct 310 AACCCGTATT-TGGGGCAAACCCGGTGGATC 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5