BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36740.1
Length=3540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947286 jgi|Araly1|947286|scaffold_703515.1 2261 0.0
> Ahg947286 jgi|Araly1|947286|scaffold_703515.1
Length=3743
Score = 2261 bits (1224), Expect = 0.0
Identities = 1357/1422 (95%), Gaps = 5/1422 (0%)
Strand=Plus/Plus
Query 1514 GAAAAATAAAGAGGGAAGAAAAACATAGTAGAAAGCGTTGTACTCCGTCAGCTCGTAGTT 1573
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1825 GAAAAATAAAGAGGGAAGAAAAACATAATAGAAAGCGTTGTACTCCGTCAGCGCGTAGTT 1884
Query 1574 CTTTGA-AAGATGTGGATTCCAAGGAGGATGGGTACATATTATTTGAAGGGAAACGCACC 1632
|||| | | |||| ||| ||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 1885 CTTT-AGAGGATGCAGATGCCAAGGAGGGTGGATACATTTTATTTGAAGGGAAACGCACC 1943
Query 1633 ATGCTGGGTTGGATGATTGATTCAACCATTGTGCCACTTAACGGAAAAGTTCAGTGCATG 1692
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 ATGCTGGGGTGGATGATTGATTCAACCATTGTGCCACTTAACGGAAAAGTTCAGTGCATG 2003
Query 1693 GACTGCAAGAAGACAGACATACTTCTAGAAGGAATTATCACAAAAGAGGGTATTCGATGC 1752
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2004 GACTGCAAGAAGACAGACATGCTTCTAGAAGGAATAATTACAAAAGAGGGTATTCGATGC 2063
Query 1753 AACTGCTGTGATGAAGTGTTCTCTGTTCTCGATTTCGAGGTTCATGCTGGCGGGAATCGC 1812
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 2064 AACTGCTGCGATGAAGTGTTCTCTGTTCTTGATTTCGAGGTTCATGCTGGAGGGAAGCAC 2123
Query 1813 AACCAGCCATTCAAAAGTCTGTATTTAGAGGGTGGGAATTCTCTCTTGCAGTGCCTCCAT 1872
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2124 AACCAGCCATTCAAAAGTCTGTATTTAGAGGGTGGGAATTCTCTCTTGCAGTGCCTCCGT 2183
Query 1873 GAGTCTATGAATAAACAAAGTGAATCACAACTTAAAGGGTACCATTTTGTGGACTTTGGT 1932
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2184 GACTTTATGAATAAACAAAGTGAATCACAACATAAAGGGTACCATTTTGTGGACTTTTGT 2243
Query 1933 TCGGGGGATCCAAATGATGACACATGTGGTATTTGTGGGGATGGGGGAGATCTTATCTGC 1992
|| || |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 2244 TCTGGAGATCCAAATGATGATACGTGTGGTATTTGTGGGGATGGGGGAGATCTAATCTGC 2303
Query 1993 TGTGATGGGTGCCCATCAACATTCCATCAGAGCTGCTTGGACATaaaaaaaTTCCCTTCT 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 TGTGATGGGTGCCCATCAACATTCCATCAGAGCTGCTTGGACATAAAAAAATTCCCTTCT 2363
Query 2053 GGTGCCTGGTATTGTTACAACTGCTCATGCAAATTTTGCGAGAAAGATGAGGCTGCTAAA 2112
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 2364 GGTGCCTGGTATTGTTGCAACTGCTCATGCAAATTTTGCGAGAAAGTTGAGGCAGCTATA 2423
Query 2113 CATGAGACTTCAACTCTACCCTCCTTATCGAGTTGCCGCCTATGTGAAGAGAAATGCTCT 2172
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2424 CATGACACTTCAACTCTACACTCCTTATCAAGTTGCCGCCTATGTGAAGAGAAATGCTCT 2483
Query 2173 AAGCATTACCCTCACACTCTTGCAGATCACCAAGCATGCATCAACCAAGATGGCACGGTG 2232
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2484 AATCATTACCCTCACACTCTTGCAGATCACCAAGCATGCATCAACCAAGATGGCACAGTG 2543
Query 2233 CCTGGTGAAAGGAGTACTGATTCATTTTGTGGAAAGTATTGTCAAGAGTTATTCGAGGAA 2292
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2544 CCTGGTGAAAGGCGTACTGATTCATTTTGTGGAAAGTATTGTCAAGAGTTATTCGAGGAA 2603
Query 2293 CTTCAGTTATTCATTGGAGTAAAACACCCACTGCCTGAGGGATTTTCATGGTCATTCCTT 2352
||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 2604 CTTCAGTTACTCATTGGAGTAAAACAACCACTGCCTGAGGGCTTTTCCTGGTCATTCCTT 2663
Query 2353 CGCCGCTTTGAGCTCCCTAGTGAGGTTGCCGATTGTGACATATCTGAGAAGATTGCATAT 2412
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2664 CGCCGCTTTGAGCTCCCTAGTGAGGTTGCCGATTGTGACATATCTGAGAGGGTTGCATAT 2723
Query 2413 AATGCCAAAATGGCTGTTGCATTTTCTGTTATGGATGAGTGCTTTTCACCTTTGGTTGAT 2472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724 AATGCCAAAATGGCTGTTGCATTTTCTGTTATGGATGAGTGCTTTTCACCTTTGGTTGAT 2783
Query 2473 CACAGGAGTGGAGTCAACCTGCTTCAAAACATTGTTTATAATTTTGGGTCGAACTTCCAT 2532
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 CACAGGAGTGGTGTCAACCTGCTTCAAAACATTGTTTATAATTTTGGGTCGAACTTCCAT 2843
Query 2533 CGGCTAGATTTCAGCAGTTTTCTCACTGCTGTTTTGGAGAGGGGTGATGAAATCATTGCT 2592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2844 CGGCTAAATTTCAGCAGTTTTCTCACTGCTGTTTTGGAGAGGGGTGATGAAATCATTGCT 2903
Query 2593 GTGGCGTCTATTAGGATACACGGCAATCAACTGGCAGAAATGCCGTTTATCGGAACCCGC 2652
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2904 GTGGCGTCTATCAGGATCCACGGCAATCAACTGGCAGAAATGCCGTTTATCGGAACCCGC 2963
Query 2653 TATATGTACAGGCGTCAAGGGATGTGTCGTCGACTAATGGATGGCATTGAATCTGCGCTT 2712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2964 TATATGTACAGGCGTCAAGGGATGTGTCGTCGACTAATGGATGGCATTGAATCTGCGCTT 3023
Query 2713 GGTTCTCTCAAAGTAGACAAGTTAGTCATACCAGCAGTGCCAGAACTGATTGATACATGG 2772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3024 GGTTCTCTCAAAGTAGACAAGTTAGTCATACCAGCAGTGCCAGAACTGATTGATACATGG 3083
Query 2773 ACTTCAGGCTTTGGCTTCGCACCTGTCAATGATTCTGAGaaaaaaaCAATTAAGAATCTG 2832
|||||||||||||||||| | ||||| ||||| || |||||||||| |||||||||||||
Sbjct 3084 ACTTCAGGCTTTGGCTTCACGCCTGTTAATGAATCAGAGAAAAAAAGAATTAAGAATCTG 3143
Query 2833 AACTTGTTGGTGTTCCCTGGCGTAGACATGTTGGGGAAATCATTGGTGAAGGAGAAGATC 2892
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3144 AACTTGTTGGTGTTCCCTGGTGTAGACATGTTGGGGAAATCATTGGTGAAGGAGAAGATC 3203
Query 2893 ACTGACTCAGTTGTTTCATCTCCCAATGGTTTAGT-GCTGTT 2933
||||||||| |||| || ||| |||||| || | | ||||||
Sbjct 3204 ACTGACTCAATTGTGTCCTCTTCCAATG-TTGA-TAGCTGTT 3243
Score = 843 bits (456), Expect = 0.0
Identities = 548/593 (92%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 928 GGACCTGAGTCTAATGGAAGGAGGATGGTACGTAAGCGTGGAAGACCTCCAACACCACAG 987
|||||||| ||| |||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1134 GGACCTGAATCTGATGGAAAGAAGATGGTACTTAAGCGTGGAAGACCTCCAACACCACAG 1193
Query 988 AAAAAGAGGAAATCGGGGATGACAGATGAATCAGATTGGAAAGCAAAGAAGAGACTGAAA 1047
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194 AAAAAGAGGAAATCGGGGATGACAGATGAATCAGATTATAAAGCAAAGAAGAGACTGAAA 1253
Query 1048 CTTTGTGAGAGTCCGTTAGAGTCAC-GGCACAACAATCCTTTAATTGATGACGAAAGGAT 1106
|||| ||||||||| |||||||||| ||| ||||||||| |||||||||| |||||||||
Sbjct 1254 CTTTTTGAGAGTCCCTTAGAGTCACAGGC-CAACAATCCCTTAATTGATGGCGAAAGGAT 1312
Query 1107 GATTGGCGAACAACGGAGTAAGCAAACTGAAGCTGGAGGAC-ATTCGAGATCAAAGTCTA 1165
|||||| || |||| || ||||||||||||||||||| ||| || | |||||||||||||
Sbjct 1313 GATTGGGGAGCAACAGAATAAGCAAACTGAAGCTGGAAGACTATCC-AGATCAAAGTCTA 1371
Query 1166 AGAAAATGCTGAGTGACAGAATACTGCAGTTACTTCTAACTGCTGGTTGGACTGTTGAAT 1225
||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||
Sbjct 1372 AGAAAATGCTGAGTGACCGGATACTGCAGTTACTTCTAGCTGCTGGTTGGACTGTCGAAT 1431
Query 1226 ATAGGCCTCGAAATGGGAGAGCTTATCAAGATGCTGTGTATCTTAATCCAGAGGGAAAGA 1285
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1432 ATAGGCCTCGAAATGGGAGAGCTTATGAAGATGCTGTGTATCTTAATCCTGAGGGAAAGA 1491
Query 1286 CTCACTGGTCAGTGACTAAGGCTTATCAAGTTTATAAAAAACAATTGGAAAGCAACCCGA 1345
|||||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||
Sbjct 1492 CTCACTGGTCAGTGACTAAGGCTTATCAAGTTTACAAAAAACATTTGGAAAGCAGCATGA 1551
Query 1346 ATGATCAAAAGAACTCTACCACTGGTTCTGGTTTTGGCTTGCTACCAGAAGAAGACCTTC 1405
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1552 ATGATCAAATGAACTCTACCACTGGTTCTGGTTGTGGCTTGCTACCAGAAGAGGACCTTC 1611
Query 1406 ATCTATTAGAGAGAACAATTCAGaaaaaaaGGAGCGATACAGGTAAGCAAAGGTCAAAAT 1465
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1612 ACCTATTAGAGAGAAGAATTCAGAAAAAAAGGAGCGATACAGGTAAGCATAGGCCAAAAC 1671
Query 1466 TGAAGGACAGAGATACTAATGACATCTTGGTTTCAACAAAGGGAACAGGAAAA 1518
|||||||||||||||||||||| | | |||||||||||||||||| ||||||
Sbjct 1672 TGAAGGACAGAGATACTAATGAAAACGTGGTTTCAACAAAGGGAAGGGGAAAA 1724
Score = 841 bits (455), Expect = 0.0
Identities = 843/1015 (83%), Gaps = 88/1015 (9%)
Strand=Plus/Plus
Query 1 ATGTTAGAAACTAACGAGCAAAAGGGTTTTGATTTAAACGTGTGTGCTTCAATTGAAGAT 60
||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 21 ATGTTTGAAACTAAAGAGAAAAAGGGTTTTGATTTAAACGAGTGTGCTTCAATTGAAGAT 80
Query 61 TTCAGTGAGTCTGA-CATTAAGGCTG--AG---GG-TGA--AACTGAT----AG---TTT 104
|||||||| ||||| | | || ||| || || ||| | |||| || |
Sbjct 81 TTCAGTGAATCTGAGCGTGAA-ACTGATAGCTTGGTTGATGATGTGATGGAGAGAACTCC 139
Query 105 GGTTGATGGTAATGTGGAGAATGTGATTGAGATTAAGGATAAG--AAAA---AA-G-T-- 155
| |||||||| ||||||||||| |||||||||||||||||| |||| || | |
Sbjct 140 GAAAGATGGTAACGTGGAGAATGTAATTGAGATTAAGGATAAGAAAAAAGTGAAGGTTAA 199
Query 156 ---GATTGAGCGTGAGATTCTCATTACGCGTAGGGTTCTTCGCTCAGGCTCTGTGGCAAG 212
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 200 GCCGATTGAGCGTGAAATTCTTATTACGCGGAGGGTTCTTCGCTCAGGCTCTGTGGCAAG 259
Query 213 GGATTTAGTAAACAGTGATAAACATTGTAAGGCTGTGAAAAGGAAAGGAAA-TGT--TG- 268
|||| |||||||||||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 260 GGATCCGGTAAACAGTGATAAACATTGTAAGTCTGTGAAAAAGAAAGGAAAGTGTGCTGA 319
Query 269 T-----T-A---G-TGG-T---G---G----A-A-GTTCTGTTGATGAGGTGAAAGAAGA 305
| | | | ||| | | | | | |||||||||||||||| | ||||||
Sbjct 320 TAAGGGTGACAAGATGGGTAAAGTTAGTGGCAGAAGTTCTGTTGATGAGGTTAGAGAAGA 379
Query 306 AGTGAAACAGGAGTGTGTT-AAGTCTT-TGGTACCTGAGGAGATTCGTGGAGATGATTTT 363
|||| |||| ||| | || || ||| || |||||||||||||| ||||||||||||||
Sbjct 380 AGTGGAACATGAGCAT-TTGAAATCTCCTG-TACCTGAGGAGATTTGTGGAGATGATTTT 437
Query 364 CGAAGTGAAGTGAAAGTGGAATCTAAGGATGATAGATCAGATGATGGAAA----AG---- 415
||||| |||| ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 438 GGAAGTCAAGTTAAACTGGAATCTAAGGATGACAGATCAGATGATGGAAATGGGAGTTTT 497
Query 416 -A-----A-G-A---GAA----A-GTTCAACGTAAAAGAGGAAGGCCTCGAAAGTTTGGG 459
| | | | ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 498 GAGCCCCATGGAAAAGAAGTGGAAGTTCAACGCAAAAGAGGAAGGCCTCGAAAGTTTGGG 557
Query 460 ATGAGCAGTCAATCTGATGATAATGGGTTAATCTCAAATTGTAAACTTCGGACATCTTTA 519
|| |||||||||||||||||||| |||| ||||||||| |||||| || |||||||||||
Sbjct 558 ATCAGCAGTCAATCTGATGATAACGGGTCAATCTCAAACTGTAAAATTGGGACATCTTTA 617
Query 520 GGTAAGAAGAAAGAACTGGTAGGCGATGATAATGTTGAGAAACTTGTTGGTGGAAGCTGC 579
| |||| || ||||||||||| | |||||||||| || ||||||| |||| |||||||||
Sbjct 618 GATAAGGAGGAAGAACTGGTAAGAGATGATAATGATGCGAAACTTATTGGCGGAAGCTGC 677
Query 580 TTTAACAAGGAGAAAGCAGAAGTAAAACTTGAGCATGGGGAATATGCTGAAGATAAAGAG 639
|||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 678 TTTAACAAGGAGAAAGTAGAAGTAAAACTTGAGCACGGGGAATATGCTGAAGCTAAAGAG 737
Query 640 ATTCTTGGACTTGATTTTAGGAGTCAGGTTAAGGTTGAAATCAAGGATGATGAATGTGG- 698
|||| ||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 738 ATTCCTGGACCTGATTTTAGGAGCCAGGTTAAGATTGAAACCAAGGATGATGAATGTGGT 797
Query 699 G--ATTGTTGAGCTACATGATGAAGAGTTGCAAGTTAAACGTAAACGGGGAAGGCCTAGA 756
| | ||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 798 GGGAGTGTCAAGCCACATGATGAAGAGCTGCAAGTTAAACGTAAACGAGGAAGGCCTAGA 857
Query 757 AAGGTGCAGATCAGCAGTCAATCTGATGAGAGTCGCCCTAACACAAACTGTAAACTTGCG 816
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 858 AAGTTGCAGATCGGCAGTCAATCTGATGAGAATCGCCCTAACACAAACTGTAAACTTGCG 917
Query 817 AGAACTCCAGAACTAAGTAGCCAGTCGAGTGTTGACAGAATTAGTTTGAGTCGTCTGCGT 876
|||||||||||| |||| |||| ||||||||||||||| || ||||||||||||| ||||
Sbjct 918 AGAACTCCAGAATTAAGCAGCCCGTCGAGTGTTGACAGGATCAGTTTGAGTCGTCGGCGT 977
Query 877 GGTAGACCCCCAAAGACCAAGGAGACCTCGGTTAGCCTTTACATTGAAAAAGGAC 931
||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||
Sbjct 978 GGTAGACCCTCTAAGACCAAGGAGACGGCGGTTGGCCTTTACATAGAAAA-GGAC 1031
Score = 590 bits (319), Expect = 3e-167
Identities = 439/496 (89%), Gaps = 11/496 (2%)
Strand=Plus/Plus
Query 3049 GTTGATAGCTGCTTGAAGTTAACTTATGTAGAAGAGGGGGATAATGACAGAGAATCCAAT 3108
||||||||||| ||||||||||| |||||||||||||||||||||| | || | |||
Sbjct 3231 GTTGATAGCTGTTTGAAGTTAACGAATGTAGAAGAGGGGGATAATGAAACAG-A--GAAT 3287
Query 3109 CTCAAGTTACTTGACGGGTCCGTGGAAGAGAAAGAAGACACTAAG-AAATTGACAGATAT 3167
|| |||||| || ||| ||||||||| ||||||||||| | |||| ||| ||||||||||
Sbjct 3288 CTGAAGTTATTTAACGAGTCCGTGGAGGAGAAAGAAGAGA-TAAGAAAACTGACAGATAT 3346
Query 3168 AGACATCAATTCTCTTCCTGATGAAGTTGATGATTCCCATGCGGATCAAAGTGATA-CAA 3226
|||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||| ||
Sbjct 3347 AGACATCAATTCCCTTCCCGATGAAGTTGATGATTCCCATGCGTATCAAACTGATATAAA 3406
Query 3227 AAGAGCAGGAAATTGATGATAAAGAAGATAAGACA-CCGTTATCTGATGATGGCTGTGAA 3285
||| ||| |||| || |||| ||||||||||| | || ||||||||||||||||||| |
Sbjct 3407 AAG-GCACGAAAGTGGTGATTTAGAAGATAAGA-AGCCATTATCTGATGATGGCTGTGGA 3464
Query 3286 GGTAAAGCTGAGGGTACCAAGGAGTCAAATCAACAACCGGATAGTAACAAAG-TAGATAA 3344
||||||||||||||||| ||| |||| |||||||||| ||| ||||| | | ||||| |
Sbjct 3465 GGTAAAGCTGAGGGTACTGAGGTGTCAGATCAACAACCCGATTGTAAC-ATGATAGATCA 3523
Query 3345 CTCTCAGCCACTTGGTAATGGTGGTACAGGGGAAGAGCTTGGCAACAGAACCTTAGCGCT 3404
|| ||||||||||||||||||||||||||||||||| ||| ||||| || |||| ||||
Sbjct 3524 TTCCCAGCCACTTGGTAATGGTGGTACAGGGGAAGAGATTGACAACAAAAACTTAACGCT 3583
Query 3405 AAAGAGAGAAGTGACTCCCACATTGCGAGCATCGCCCCGACTGATTCAAAGATCGTGGAG 3464
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3584 AAAGAGAGAAGTGACTACCACATTGCGAGCATCACCCCGACTGATTCAAAGATCGTGGAG 3643
Query 3465 AACATCACGGGTGAACCAGAAGTTCACAGGTACTACTAACGCCGTACTGCTTGACTCTCC 3524
|||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 3644 AACATCGCGGGTGAACCAGAAGTACACAGGTACTACTAATGCCGTATTGCTTGACTCTCC 3703
Query 3525 ACACCGGTGTGTCTGA 3540
||||||||||||||||
Sbjct 3704 ACACCGGTGTGTCTGA 3719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133696253949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5