BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36805.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701 272 8e-73
Ahg925210 jgi|Araly1|925210|scaffold_200771.1 270 3e-72
Ahg933133 jgi|Araly1|933133|scaffold_401121.1 267 4e-71
Ahg925216 jgi|Araly1|925216|scaffold_200777.1 255 8e-68
> Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701
Length=273
Score = 272 bits (147), Expect = 8e-73
Identities = 221/254 (87%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
Query 60 GATGA-TTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGA 118
||| | | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 GAT-AGTGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
Query 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-AA 177
Query 179 AACTCT-GCAATGAAAACAAA----C--ATGAGGAA-TATGTCGTGCCTCGAAGTTACT- 229
|| | | |||| |||||||| | ||||| || | | |||||| |||||||| ||
Sbjct 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAACT-TATCGTGCATCGAAGTT-CTT 235
Query 230 GCAATGGATTATTC 243
|| | |||||||||
Sbjct 236 GCGACGGATTATTC 249
> Ahg925210 jgi|Araly1|925210|scaffold_200771.1
Length=313
Score = 270 bits (146), Expect = 3e-72
Identities = 231/270 (86%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
||||| |||||| |||| ||||| |||||||| || ||||||||||||||||||||| |
Sbjct 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
Query 60 GATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAA 119
|||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 140 TCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 199
Query 180 ACTCTGCAATGAAAACAAA----C--ATGAGGAATATGTCGTGCCTCGAAGTTACT-GCA 232
| ||||||| |||||||| | |||| || | ||||||||||||||| || ||
Sbjct 200 ATTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGCG 258
Query 233 ATGGATTATTC---TGGTTTCTATGTGATA 259
| ||||||||| ||||| |||||| |||
Sbjct 259 ACGGATTATTCAGCTGGTTACTATGTAATA 288
> Ahg933133 jgi|Araly1|933133|scaffold_401121.1
Length=316
Score = 267 bits (144), Expect = 4e-71
Identities = 180/198 (91%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
Query 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
|| || |||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 141 CAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAA 200
Query 181 CTCTGCAATGAAAACAAA 198
|||||||| || |||||
Sbjct 201 CTCTGCAACCAAGACAAA 218
> Ahg925216 jgi|Araly1|925216|scaffold_200777.1
Length=317
Score = 255 bits (138), Expect = 8e-68
Identities = 179/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||
Sbjct 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTACTTTTATTTACA 80
Query 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
Query 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
|| ||||||||| ||||| |||||| |||| |||| |||||||||| |||||||| ||||
Sbjct 141 CAGTGCATGAAAATTTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCA-AAAA 199
Query 181 -CTCTGCAATGAAAACAAA 198
|||||||| ||||||||
Sbjct 200 GCTCTGCAACCAAAACAAA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5