BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36890.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value Ahg493685 jgi|Araly1|493685|fgenesh2_kg.7__3118__AT5G36890.1 2702 0.0 > Ahg493685 jgi|Araly1|493685|fgenesh2_kg.7__3118__AT5G36890.1 Length=1731 Score = 2702 bits (1463), Expect = 0.0 Identities = 1661/1752 (95%), Gaps = 32/1752 (2%) Strand=Plus/Plus Query 10 TTCTATTAAAATTGGTAGACCAAAACATTCGGGCTGATTTTGGCCTTCT-TTCTGATATT 68 |||||||||||||||||||||||| ||| ||||||||||| |||||||| ||| | | Sbjct 1 TTCTATTAAAATTGGTAGACCAAACCATACGGGCTGATTTAGGCCTTCTCTTCCG--A-- 56 Query 69 TATTTATCTCCGAAACTTTTGCTTCTTAAGTCTGTCTCTCTCTTCTATCAGATTCCACAC 128 |||||||||||| |||||||| | | | ||| | | |||||||||||| || Sbjct 57 TATTTATCTCCGCAACTTTTG---C---A---T-TCT-T-GC--GTATCAGATTCCATAC 102 Query 129 TAATCGGAAAAAATGGCACAGAAGCTTAACTTG-CTTAATCTCGCCGTCCCTCCGGTCAC 187 ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 103 TAATCGGAAAAAATGGCACAGAAGCTTAACTTGAC-TAATCTCGCCGTCTCTCCGGTCAC 161 Query 188 CCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGAT 247 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 162 CCACCGCTCTAACTTCCCTTCCACTTTCACCTTCGGCGTTGCCACTTCCGCTTACCAGAT 221 Query 248 TGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATAT 307 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 222 TGAAGGAGGTTGGAATGAAGGTAAAAAAGGACCAAGTATATGGGATAAGTTCACTCATCT 281 Query 308 CGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 367 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 341 Query 368 CAAGGAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATC 427 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 342 CAAGGAAGATGTTGAACTTATAGGACAATTAGGATTTGGTGCTTACAGATTTTCTATATC 401 Query 428 TTGGTCTCGAATTTTCCCTGATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 487 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 402 TTGGTCTCGCATTTTCCCTGATGGCTTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 461 Query 488 CTACAACGATCTTATTAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 547 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 CTACAACAATCTTATCAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 521 Query 548 CCATTGGGATCTCCCATCACATCTCCAGGAAGCAATCGGAGGTTGGACAAATAGGAAAAT 607 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 522 CCATTGGGATCTCCCATCCCATCTCCAGGACGCAATCGGAGGTTGGACAAATAGGAAAAT 581 Query 608 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 641 Query 668 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 701 Query 728 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCACATCATCA 787 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 702 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCGCATCATCA 761 Query 788 GGTTCTGGCCCATGCAACTGCTGTATCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 847 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 762 GGTTTTGGCCCATGCAACTGCTGTTTCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 821 Query 848 TGGACAAATCGGTTTGTCAGTTGATTGTGAATGGGCAGAGCCAAACTCTGAGAAACCAGA 907 |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || Sbjct 822 TGGACAAATCGGTTTGTCAGTTGATTGTGAGTGGGCGGAGCCAAACTCAGAGAAACCGGA 881 Query 908 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 941 Query 968 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1027 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1001 Query 1028 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1087 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1061 Query 1088 CTATACGT-CGAGGTTGATTTCTCATGTCTCAAACAAAGAAGCTGAGAGTAACTTTTACC 1146 |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1062 CTATAC-TACGAGGTTGATTTCTCATGTCTCAAATAAAGAAGCTGAGAGTAACTTTTACC 1120 Query 1147 AAGCACAAGAATTGGAGAGGATTGTTGAACTGGAAAATGGAGATTTGATAGGCGAAAGGG 1206 ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1121 AAGCACAAGAACTGGAGAGGATTGTTGAACAGGAAAATGGAGAGCTGATAGGCGAAAGGG 1180 Query 1207 CTGCTTCGGATTGGCTTTATGCTGTGCCTTGGGGAATCCGAAAGACATTGAATTACATGA 1266 ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct 1181 CTGCTTCGGATTGGCTTTATGTTGTGCCTTGGGGAATCCGGAAGACTTTGAATTACATCA 1240 Query 1267 GCAAAAAATATAACCACCCTCCAATATTTATCACTGAAAATGGTATGGATGATGAAGATG 1326 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 1241 GCAAAAAATATAACCACCCTCCAATCTTTATTACTGAAAATGGTATGGATGACGAAGATG 1300 Query 1327 ATGGATCGGCCTCTATTCATGATATGCTTGACGATAAACGTAGAGTTGACTATTTCAAGA 1386 ||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||| Sbjct 1301 ATGGATCTGCCTCTATCCATGATATGCTTGACGATAAGCGTAGAGTTGCCTATTTCAAGA 1360 Query 1387 GTTACCTTGCCAACGTCTCCCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1446 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1361 GTTACCTTGCCAATGTCTCTCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1420 Query 1447 CGTGGTCGCTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1506 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1421 CATGGTCGTTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1480 Query 1507 TATATGTAGACTACAAGAACGGTTTAACCCGTCACCCAAAATCATCTGCTTACTGGTTCA 1566 |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1481 TATATGTAGACTACAAGAACGGTTTAACCCGTCATCCAAAATCATCTGCGTATTGGTTCA 1540 Query 1567 tgaaatttctgaaaggtgatgaagaaaacaaaggtaagaaggaatgaaaaaaggatcaaa 1626 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| Sbjct 1541 TGAAATTTCTGAAAGGTGATGAAGAAACCAAAGGTAAGAAGGAATGAAAAA-GGATAAAA 1599 Query 1627 gaaaactaaagCTACTACAGCATTTTACATGAAATGTGTTGTGATGTTATAATTTTTGTA 1686 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1600 GAAAACTAAAGCTACTACAACATTTTACATGAAATGTGTTGTGATGTTATAACTTTTGTA 1659 Query 1687 CCAAATAGATCAATTAGTTCAATA-A-C-A--A-A--CCAAATCACTTGGGGTGCTCTTT 1738 ||||||||||||||||||| |||| | | | | | ||||||| |||||| |||||||| Sbjct 1660 CCAAATAGATCAATTAGTTGAATAGAGCCATGACAAACCAAATCCCTTGGGCTGCTCTTT 1719 Query 1739 GGTTTTAAACTC 1750 |||||||||||| Sbjct 1720 GGTTTTAAACTC 1731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65705672625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5