BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36890.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493685 jgi|Araly1|493685|fgenesh2_kg.7__3118__AT5G36890.1 2702 0.0
> Ahg493685 jgi|Araly1|493685|fgenesh2_kg.7__3118__AT5G36890.1
Length=1731
Score = 2702 bits (1463), Expect = 0.0
Identities = 1661/1752 (95%), Gaps = 32/1752 (2%)
Strand=Plus/Plus
Query 10 TTCTATTAAAATTGGTAGACCAAAACATTCGGGCTGATTTTGGCCTTCT-TTCTGATATT 68
|||||||||||||||||||||||| ||| ||||||||||| |||||||| ||| | |
Sbjct 1 TTCTATTAAAATTGGTAGACCAAACCATACGGGCTGATTTAGGCCTTCTCTTCCG--A-- 56
Query 69 TATTTATCTCCGAAACTTTTGCTTCTTAAGTCTGTCTCTCTCTTCTATCAGATTCCACAC 128
|||||||||||| |||||||| | | | ||| | | |||||||||||| ||
Sbjct 57 TATTTATCTCCGCAACTTTTG---C---A---T-TCT-T-GC--GTATCAGATTCCATAC 102
Query 129 TAATCGGAAAAAATGGCACAGAAGCTTAACTTG-CTTAATCTCGCCGTCCCTCCGGTCAC 187
||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 103 TAATCGGAAAAAATGGCACAGAAGCTTAACTTGAC-TAATCTCGCCGTCTCTCCGGTCAC 161
Query 188 CCACCGCTCTAACTTCCCTTCCACCTTCACCTTCGGCGTCGCCACTTCCGCTTACCAGAT 247
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 162 CCACCGCTCTAACTTCCCTTCCACTTTCACCTTCGGCGTTGCCACTTCCGCTTACCAGAT 221
Query 248 TGAAGGAGGTTGGAATGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATAT 307
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 222 TGAAGGAGGTTGGAATGAAGGTAAAAAAGGACCAAGTATATGGGATAAGTTCACTCATCT 281
Query 308 CGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGAAGGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATA 341
Query 368 CAAGGAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATC 427
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 342 CAAGGAAGATGTTGAACTTATAGGACAATTAGGATTTGGTGCTTACAGATTTTCTATATC 401
Query 428 TTGGTCTCGAATTTTCCCTGATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 487
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 402 TTGGTCTCGCATTTTCCCTGATGGCTTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTT 461
Query 488 CTACAACGATCTTATTAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 547
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CTACAACAATCTTATCAATACACTTCTTGAAAAAGGTATTCAGCCGTATGTAACTCTGTA 521
Query 548 CCATTGGGATCTCCCATCACATCTCCAGGAAGCAATCGGAGGTTGGACAAATAGGAAAAT 607
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 522 CCATTGGGATCTCCCATCCCATCTCCAGGACGCAATCGGAGGTTGGACAAATAGGAAAAT 581
Query 608 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TGTCGATTATTTTGGCCTCTATGCAGATGCTTGTTTTGCCAATTTTGGTGATAGAGTGAA 641
Query 668 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GCACTGGATCACATTAAATGAACCTCTTCAGACCTCGGTGAATGGACACTGTATTGGTAT 701
Query 728 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCACATCATCA 787
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 702 ATTTGCACCTGGAAGAAATGAGAAGCCCTTGATCGAACCATATTTGGTCTCGCATCATCA 761
Query 788 GGTTCTGGCCCATGCAACTGCTGTATCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 847
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 762 GGTTTTGGCCCATGCAACTGCTGTTTCCATATATAGAAGCAAGTACAAGGAAAGTCAAGG 821
Query 848 TGGACAAATCGGTTTGTCAGTTGATTGTGAATGGGCAGAGCCAAACTCTGAGAAACCAGA 907
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 822 TGGACAAATCGGTTTGTCAGTTGATTGTGAGTGGGCGGAGCCAAACTCAGAGAAACCGGA 881
Query 908 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGACAAGGTTGCTGCGGATAGGCGAATTGACTTTCAACTTGGATGGTTCTTGGATCCTTT 941
Query 968 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GTTTTTTGGAGACTATCCTGCAAGTATGCGCCAGAAACTTGGAGACAATCTTCCTAGATT 1001
Query 1028 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TACTCCGGAAGAAAAGGAGTTTATGCTTCAAAACTCATGGGACTTCCTTGGCCTGAACCA 1061
Query 1088 CTATACGT-CGAGGTTGATTTCTCATGTCTCAAACAAAGAAGCTGAGAGTAACTTTTACC 1146
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1062 CTATAC-TACGAGGTTGATTTCTCATGTCTCAAATAAAGAAGCTGAGAGTAACTTTTACC 1120
Query 1147 AAGCACAAGAATTGGAGAGGATTGTTGAACTGGAAAATGGAGATTTGATAGGCGAAAGGG 1206
||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1121 AAGCACAAGAACTGGAGAGGATTGTTGAACAGGAAAATGGAGAGCTGATAGGCGAAAGGG 1180
Query 1207 CTGCTTCGGATTGGCTTTATGCTGTGCCTTGGGGAATCCGAAAGACATTGAATTACATGA 1266
||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
Sbjct 1181 CTGCTTCGGATTGGCTTTATGTTGTGCCTTGGGGAATCCGGAAGACTTTGAATTACATCA 1240
Query 1267 GCAAAAAATATAACCACCCTCCAATATTTATCACTGAAAATGGTATGGATGATGAAGATG 1326
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1241 GCAAAAAATATAACCACCCTCCAATCTTTATTACTGAAAATGGTATGGATGACGAAGATG 1300
Query 1327 ATGGATCGGCCTCTATTCATGATATGCTTGACGATAAACGTAGAGTTGACTATTTCAAGA 1386
||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1301 ATGGATCTGCCTCTATCCATGATATGCTTGACGATAAGCGTAGAGTTGCCTATTTCAAGA 1360
Query 1387 GTTACCTTGCCAACGTCTCCCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1446
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GTTACCTTGCCAATGTCTCTCAGGCTATTGAAGACGGAGTGGACATAAAGGGATACTTTG 1420
Query 1447 CGTGGTCGCTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1506
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 CATGGTCGTTGCTGGACAACTTCGAGTGGGCGCAAGGGTACACCAAGAGATTTGGTTTGG 1480
Query 1507 TATATGTAGACTACAAGAACGGTTTAACCCGTCACCCAAAATCATCTGCTTACTGGTTCA 1566
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1481 TATATGTAGACTACAAGAACGGTTTAACCCGTCATCCAAAATCATCTGCGTATTGGTTCA 1540
Query 1567 tgaaatttctgaaaggtgatgaagaaaacaaaggtaagaaggaatgaaaaaaggatcaaa 1626
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 1541 TGAAATTTCTGAAAGGTGATGAAGAAACCAAAGGTAAGAAGGAATGAAAAA-GGATAAAA 1599
Query 1627 gaaaactaaagCTACTACAGCATTTTACATGAAATGTGTTGTGATGTTATAATTTTTGTA 1686
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1600 GAAAACTAAAGCTACTACAACATTTTACATGAAATGTGTTGTGATGTTATAACTTTTGTA 1659
Query 1687 CCAAATAGATCAATTAGTTCAATA-A-C-A--A-A--CCAAATCACTTGGGGTGCTCTTT 1738
||||||||||||||||||| |||| | | | | | ||||||| |||||| ||||||||
Sbjct 1660 CCAAATAGATCAATTAGTTGAATAGAGCCATGACAAACCAAATCCCTTGGGCTGCTCTTT 1719
Query 1739 GGTTTTAAACTC 1750
||||||||||||
Sbjct 1720 GGTTTTAAACTC 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5