BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G36904.1

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480435 jgi|Araly1|480435|fgenesh2_kg.3__3136__AT5G06020.1         206    2e-52
  Ahg931342 jgi|Araly1|931342|scaffold_303799.1                        204    6e-52


> Ahg480435 jgi|Araly1|480435|fgenesh2_kg.3__3136__AT5G06020.1
Length=153

 Score =  206 bits (111),  Expect = 2e-52
 Identities = 140/153 (92%), Gaps = 5/153 (3%)
 Strand=Plus/Plus

Query  140  GAGTACCATTGT-CAATC-AGAGGTCCTCTTACGACGATCACGGTACAAAACGATAATGA  197
            ||| |||||| | ||| | ||||| |||||||||||||||||||||| |||| |||||||
Sbjct  2    GAGAACCATT-TCCAA-CTAGAGGGCCTCTTACGACGATCACGGTACGAAACAATAATGA  59

Query  198  CTATTTGCTTGGAATCCACTGTAAATCTAAAGATGATGATCTTGGTTTCCACATTCTCAA  257
            ||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||
Sbjct  60   CTATTTGCTTGGAATCCACCGTAAATCTAAAGATGAT-ATCTCGGTTTCCACGTTCTCAA  118

Query  258  ACAAGGTGAATTATATGGTTGGAAATTTCATGT  290
            | |||||||||||||||||||||||||||||||
Sbjct  119  AAAAGGTGAATTATATGGTTGGAAATTTCATGT  151


> Ahg931342 jgi|Araly1|931342|scaffold_303799.1
Length=495

 Score =  204 bits (110),  Expect = 6e-52
 Identities = 137/150 (91%), Gaps = 1/150 (1%)
 Strand=Plus/Plus

Query  1    ATGATAAACTCATCGAGAGTAAATCTCAACTCTTATTTTTGCTCAATTTTCATTGTGTCC  60
            |||||||||||||| |||  ||||||||| |||||||| ||||||||||||| | |||||
Sbjct  21   ATGATAAACTCATCCAGAAAAAATCTCAATTCTTATTTCTGCTCAATTTTCACTATGTCC  80

Query  61   ATAGTTGTGATATCTTTGATATGTTCAGAAGCTCTTCAAATTCAACAAACTAAAGAACCA  120
            ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct  81   ATAGTTGTGATATCTTTGATATGTTCAGAAGCTTTTCCAATTCAACAAGCTAAAGAACCA  140

Query  121  CTTCGAGGTCATCTTACGAGAGT-ACCATT  149
            | ||||||||||||||||||||| || |||
Sbjct  141  CCTCGAGGTCATCTTACGAGAGTCACGATT  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17589726529


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5