BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36910.1 Length=718 Score E Sequences producing significant alignments: (Bits) Value Ahg891275 jgi|Araly1|891275|Al_scaffold_0007_3261 399 1e-110 > Ahg891275 jgi|Araly1|891275|Al_scaffold_0007_3261 Length=405 Score = 399 bits (216), Expect = 1e-110 Identities = 351/414 (85%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 78 ATGGAAGGCAAAACTGTGATCTCAAGTCTGCTCATAATGAGTCTTGTCTTAG-CACAGAT 136 |||||||| ||||| |||||||||||||||||||||||||| |||||||| | || |||| Sbjct 1 ATGGAAGGAAAAACAGTGATCTCAAGTCTGCTCATAATGAGGCTTGTCTT-GACAAAGAT 59 Query 137 TCAAGTAGAAGC--AAAAA-TCTGCTGTCCT-ACCAAGGA-TGATAGATCTGTGTAT-TT 190 |||||||||||| ||||| ||||||||||| ||| | || || ||||||| ||| | Sbjct 60 TCAAGTAGAAGCAAAAAAACTCTGCTGTCCTAACC-A-GACTGCTAGATCTAAATATCTA 117 Query 191 TGTATGCATGCTTTCCGTGTCATCCCAATTTTATTGTCTATTAAAGAGTAAATGCAAAAA 250 | ||||||| | | | |||||| | |||||||| | ||||| |||||||| Sbjct 118 T-TATGCAT--TAGGAG-GCCATCCCCAGAACATTGTCTAGCATTGAGTACATGCAAAAT 173 Query 251 TACATCTCAGACGATATGTCCTCCGGGATATACTAATGACATTC-TCGAAAATTCTGGTG 309 || ||| || |||||||||||||||||||| |||||||||| | ||||||||||||| Sbjct 174 TATTTCTGGGAATATATGTCCTCCGGGATATACAAATGACATTCAT-GAAAATTCTGGTG 232 Query 310 ATGCTGTCAATGAATATTGCAAGCTAGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACCA 369 |||||||||||||||||||| || | |||||||||||||||||||||||||||||||| | Sbjct 233 ATGCTGTCAATGAATATTGCGAGTTGGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACTA 292 Query 370 CTCTCCAAAACTTTGACACAAGTAAAG-TATTGAGTGAAGCGGTTGAACAATGCACCAAG 428 |||||||||||| ||| ||||||||| | ||||||||||||||||||| |||| ||||| Sbjct 293 CTCTCCAAAACTCGGACGCAAGTAAAGCT-TTGAGTGAAGCGGTTGAACTATGCGCCAAG 351 Query 429 GCATGTTCTTCTGTCTGCACCGGAGGATCTACCGCCGCAGTTAAAAGTGCCTAA 482 ||||||||| |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 352 GCATGTTCTACTGTCTGCACCGGAGGATCTACGGCCGCAATTAAAAGTGCTTAA 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26419181481 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5