BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G36910.1

Length=718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891275 jgi|Araly1|891275|Al_scaffold_0007_3261                    399    1e-110


> Ahg891275 jgi|Araly1|891275|Al_scaffold_0007_3261
Length=405

 Score =  399 bits (216),  Expect = 1e-110
 Identities = 351/414 (85%), Gaps = 18/414 (4%)
 Strand=Plus/Plus

Query  78   ATGGAAGGCAAAACTGTGATCTCAAGTCTGCTCATAATGAGTCTTGTCTTAG-CACAGAT  136
            |||||||| ||||| |||||||||||||||||||||||||| |||||||| | || ||||
Sbjct  1    ATGGAAGGAAAAACAGTGATCTCAAGTCTGCTCATAATGAGGCTTGTCTT-GACAAAGAT  59

Query  137  TCAAGTAGAAGC--AAAAA-TCTGCTGTCCT-ACCAAGGA-TGATAGATCTGTGTAT-TT  190
            ||||||||||||  ||||| ||||||||||| ||| | || || |||||||   ||| | 
Sbjct  60   TCAAGTAGAAGCAAAAAAACTCTGCTGTCCTAACC-A-GACTGCTAGATCTAAATATCTA  117

Query  191  TGTATGCATGCTTTCCGTGTCATCCCAATTTTATTGTCTATTAAAGAGTAAATGCAAAAA  250
            | |||||||  |    | | |||||| |    ||||||||  |  ||||| |||||||| 
Sbjct  118  T-TATGCAT--TAGGAG-GCCATCCCCAGAACATTGTCTAGCATTGAGTACATGCAAAAT  173

Query  251  TACATCTCAGACGATATGTCCTCCGGGATATACTAATGACATTC-TCGAAAATTCTGGTG  309
            ||  |||  ||  |||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct  174  TATTTCTGGGAATATATGTCCTCCGGGATATACAAATGACATTCAT-GAAAATTCTGGTG  232

Query  310  ATGCTGTCAATGAATATTGCAAGCTAGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACCA  369
            |||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
Sbjct  233  ATGCTGTCAATGAATATTGCGAGTTGGGGTGTGCATCCTCTGTGTGTGGTGCCTTGACTA  292

Query  370  CTCTCCAAAACTTTGACACAAGTAAAG-TATTGAGTGAAGCGGTTGAACAATGCACCAAG  428
            ||||||||||||  ||| ||||||||| | ||||||||||||||||||| |||| |||||
Sbjct  293  CTCTCCAAAACTCGGACGCAAGTAAAGCT-TTGAGTGAAGCGGTTGAACTATGCGCCAAG  351

Query  429  GCATGTTCTTCTGTCTGCACCGGAGGATCTACCGCCGCAGTTAAAAGTGCCTAA  482
            ||||||||| |||||||||||||||||||||| |||||| |||||||||| |||
Sbjct  352  GCATGTTCTACTGTCTGCACCGGAGGATCTACGGCCGCAATTAAAAGTGCTTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26419181481


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5