BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36920.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891277 jgi|Araly1|891277|Al_scaffold_0007_3263 375 6e-104
Ahg330249 jgi|Araly1|330249|fgenesh1_pm.C_scaffold_7002476 248 1e-65
> Ahg891277 jgi|Araly1|891277|Al_scaffold_0007_3263
Length=252
Score = 375 bits (203), Expect = 6e-104
Identities = 235/250 (94%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGAAGAATACATCACATGTTCTTTTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGAAGAAGACATCACATGTTCTTCTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60
Query 61 GTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGATATGGGTCCAGCAATATATACT 120
|||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||
Sbjct 61 GTGATTGGTCTTGTAGAAGCTAGTATTCCAGGTGGCGATATGGGTCCAGAAATATATACT 120
Query 121 CCACCATCAGGATCATGTGGAGCTCCTATTTCCAAATATGATTTCCAAG---TACTAGCC 177
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||
Sbjct 121 CCACCATCAGGATCATGTGGAGCTCCTATTGCCAAATATGATTCCCAAGTACTACTAACC 180
Query 178 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCCATACT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 181 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCTACACC 240
Query 238 ACACGACCTT 247
||||||||||
Sbjct 241 ACACGACCTT 250
> Ahg330249 jgi|Araly1|330249|fgenesh1_pm.C_scaffold_7002476
Length=237
Score = 248 bits (134), Expect = 1e-65
Identities = 191/217 (88%), Gaps = 9/217 (4%)
Strand=Plus/Plus
Query 39 TCTTCTGCTTTGCCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGA 98
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | |||
Sbjct 24 TCTTCTGCTTTGTCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGA 83
Query 99 TATGGGTCCAGC-AAT-ATATACTCCACCATCAGGATCATGTGGAGCTCCTATTTCCAAA 156
||||||||| || ||| | | ||||||||||||||||||||||||||| | ||| |||||
Sbjct 84 TATGGGTCC-GCAAATAAGA-ACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCAAA 141
Query 157 TATGATT--TC-CAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACTCGAA 213
|| |||| || ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 142 TACGATTCATCACAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAA 201
Query 214 AACACA-GAAGATGTGACCCATACTACACGACCTTGA 249
||| || ||||||||||| || ||||||| ||||||
Sbjct 202 AAC-CAAGAAGATGTGACTCACACTACACTTCCTTGA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5