BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36920.1 Length=249 Score E Sequences producing significant alignments: (Bits) Value Ahg891277 jgi|Araly1|891277|Al_scaffold_0007_3263 375 6e-104 Ahg330249 jgi|Araly1|330249|fgenesh1_pm.C_scaffold_7002476 248 1e-65 > Ahg891277 jgi|Araly1|891277|Al_scaffold_0007_3263 Length=252 Score = 375 bits (203), Expect = 6e-104 Identities = 235/250 (94%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 1 ATGGCGATGAAGAATACATCACATGTTCTTTTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATGAAGAAGACATCACATGTTCTTCTGCTAAGTCTTCTGCTTTGCCTGATGTTT 60 Query 61 GTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGATATGGGTCCAGCAATATATACT 120 |||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||| Sbjct 61 GTGATTGGTCTTGTAGAAGCTAGTATTCCAGGTGGCGATATGGGTCCAGAAATATATACT 120 Query 121 CCACCATCAGGATCATGTGGAGCTCCTATTTCCAAATATGATTTCCAAG---TACTAGCC 177 |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| || Sbjct 121 CCACCATCAGGATCATGTGGAGCTCCTATTGCCAAATATGATTCCCAAGTACTACTAACC 180 Query 178 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCCATACT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 181 AAGAGACCACCACCATGTAGACGTCCTCGACTCGAAAACACAGAAGATGTGACCTACACC 240 Query 238 ACACGACCTT 247 |||||||||| Sbjct 241 ACACGACCTT 250 > Ahg330249 jgi|Araly1|330249|fgenesh1_pm.C_scaffold_7002476 Length=237 Score = 248 bits (134), Expect = 1e-65 Identities = 191/217 (88%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 39 TCTTCTGCTTTGCCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGA 98 |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct 24 TCTTCTGCTTTGTCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGA 83 Query 99 TATGGGTCCAGC-AAT-ATATACTCCACCATCAGGATCATGTGGAGCTCCTATTTCCAAA 156 ||||||||| || ||| | | ||||||||||||||||||||||||||| | ||| ||||| Sbjct 84 TATGGGTCC-GCAAATAAGA-ACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCAAA 141 Query 157 TATGATT--TC-CAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACTCGAA 213 || |||| || ||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 142 TACGATTCATCACAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAA 201 Query 214 AACACA-GAAGATGTGACCCATACTACACGACCTTGA 249 ||| || ||||||||||| || ||||||| |||||| Sbjct 202 AAC-CAAGAAGATGTGACTCACACTACACTTCCTTGA 237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8630546986 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5