BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36950.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493687 jgi|Araly1|493687|fgenesh2_kg.7__3120__AT5G36950.1 3042 0.0
> Ahg493687 jgi|Araly1|493687|fgenesh2_kg.7__3120__AT5G36950.1
Length=1911
Score = 3042 bits (1647), Expect = 0.0
Identities = 1832/1920 (95%), Gaps = 17/1920 (1%)
Strand=Plus/Plus
Query 3 CGG-AAAATAATGCTGCTCCGGTCATTTCGCACCGTCGAGCTTCTCCGCCGAATCTCCAC 61
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGAAAAAT-ATGCTGCTCCGGTCATTTCGCACCGTCGAGCTTCTCCGCCGAATCTCCAC 59
Query 62 TTC-T--TCAGTCTCTGGATATCGAACTTCTCCTTCACTT-TTACAACGTTGCAATGGCT 117
||| | ||||||||||||||||| |||||| ||||| || ||||||||||||||||| |
Sbjct 60 TTCTTCATCAGTCTCTGGATATCGCACTTCTTCTTCA-TTCTTACAACGTTGCAATGGAT 118
Query 118 TCCAAAGCTATTTACCACACAGAGTAACAACAACAGAGAGTCCTTTCCCTTCACACATCT 177
| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 119 TTCAAAGCTATTTACCACACAGAGT---AACAACAGAGAGTCCTTTCCCTTCTCATATCT 175
Query 178 CTCGATTCTGTTCTTCTCAGAGCGCGAATTCGCAAAATGAGAATCGACACACGACTCTAT 237
|||||||||||| ||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 176 CTCGATTCTGTTATTCTCTGACCGTGAATTCGCAAAATGAGAATCAACACACGACTCTAT 235
Query 238 CATCACCGGTTTCTTCACGGAGGGTTAATAACAGAAAGATTTCACGGCGGAGGAAGGCGG 297
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 CAGCACCGGTTTTTTCACGGAGGGTTAATAATAGAAAGATTTCACGGCGGAGGAAGGCGG 295
Query 298 GAAAATCATTATCAATCTCGCCGGCGGCGGATGCGGTTGATTTGGCGTTAGACTCAGTGG 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAAATCACCATCAATCTCGCCGGCGGCGGATGCGGTTGATTTGGCGTTAGACTCAGTGG 355
Query 358 TGAAGATCTTTACTGTTTCTACAAGTCCTAGTTACTTTCTTCCTTGGCAGAATAAGTCTC 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGAAGATCTTCACTGTTTCTACAAGTCCTAGTTACTTTCTTCCTTGGCAGAATAAGTCTC 415
Query 418 A-ACGAGAATCTATGGGCTCTGGATTTGTGATTTCTGGAAGGAAGATTATAACGAATGCG 476
| | ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 416 AGA-GAGAATCCATGGGCTCTGGATTTGTGATTTCGGGAAGAAAGATTATAACGAATGCG 474
Query 477 CATGTCGTGGCTGATCACTCCTTTGTGTTAGTTAGAAAGCATGGATCGTCGATAAAACAC 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CATGTGGTGGCTGATCACTCCTTTGTGTTAGTTAGAAAGCATGGATCGTCGATAAAACAC 534
Query 537 AGAGCAGAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCTATATTGGTAGTTGATAGT 596
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 535 AGAGCAGAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCAATCTTGGTAGTTGATAGT 594
Query 597 GAAGTGTTTTGGGAAGGTATGAATGCTTTGGAGCTAGGAGATATACCGTTTCTTCAGGAA 656
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 595 GAAGTGTTTTGGGAAGGTATGAATTCGTTGGAGCTTGGAGATATACCGTTTCTTCAGGAA 654
Query 657 GCTGTGGCTGTAGTTGGCTATCCTCAAGGTGGTGACAACATTTCTGTTACAAAAGGTGTT 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 655 GCTGTGGCTGTAGTTGGCTATCCTCAAGGTGGTGACAACATCTCTGTTACAAAAGGTGTT 714
Query 717 GTGTCTCGAGTTGAACCGACACAATATGTTCACGGTGCCACCCAGCTAATGGCTATACAA 776
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 715 GTGTCTCGAGTTGAACCAACACAATATGTTCACGGCGCTACCCAACTAATGGCTATACAA 774
Query 777 ATAGATGCTGCTATTAACCCCGGAAATAGTGGTGGCCCAGCTATCATGGGAAACAAAGTA 836
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 775 ATAGATGCTGCTATTAACCCTGGAAATAGTGGTGGCCCAGCAATCATGGGAAACAAAGTA 834
Query 837 GCTGGTGTCGCATTTCAAAATCTTTCAGGTGCTGAGAATATAGGCTATATAATTCCAACA 896
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 835 GCTGGTGTAGCATTTCAAAATCTTTCAGGTGCTGAGAACATTGGCTATATAATTCCAACA 894
Query 897 CCAGTGATAAAGCATTTCATAAATGGCGTTGAAGAATGTGGTAAATACATTGGTTTTTGT 956
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 895 CCAGTGATTAAGCATTTCATAAATGGTGTTGAAGAATGTGGTAAATACATTGGTTTCTGT 954
Query 957 TCAATGGGTGTATCATGTCAGCCTATGGAGAATGGTGAACTTCGTAGTGGTTTTCAGATG 1016
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 TCAATGGGTGTATCATGTCAGCCTATGGAGAATGGTGAACTTCGTAGCGGTTTTCAGATG 1014
Query 1017 AGTTCTGAAATGACAGGGGTTCTTGTTAGCAAAATAAACCCTCTATCAGATGCTCACAAA 1076
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1015 AGTTCTGAAATGACAGGGGTTCTTGTTAGCAAAATAAACCCTTTATCAGATGCTCACAAA 1074
Query 1077 ATTTTGAAGAAAGATGATGTTCTTCTTGCATTTGATGGTGTTCCTATAGCAAATGATGGA 1136
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTTTTGAAGAAAGATGATGTTATTCTTGCATTTGATGGTGTTCCTATAGCAAATGATGGA 1134
Query 1137 ACAGTTCCTTTTCGGAACAGGGAGAGAATCACTTTCGACCATTTGGTTTCTATGAAGAAA 1196
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1135 ACAGTTCCTTTTCGGAACAGGGAGCGAATCACTTTCGATCATTTGGTTTCTATGAAGAAA 1194
Query 1197 CCAGATGAAACAGCCTTGGTTAAAGTTTTGAGAGAGGGGAAAG-AACATGAATTCAGTAT 1255
|||||||||||||||||||||||||| ||||| ||||| |||| ||||||| ||||||||
Sbjct 1195 CCAGATGAAACAGCCTTGGTTAAAGTCTTGAGGGAGGG-AAAGGAACATGAGTTCAGTAT 1253
Query 1256 CACACTAAGACCTCTGCAACCACTAGTTCCAGTGCATCAATTTGATCAGCTTCCCAGTTA 1315
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1254 CACACTAAGACCTCTGCAACCACTGGTTCCAGTGCATCAATTTGATCAGCTTCCCAGTTA 1313
Query 1316 TTATATATTTGCGGGCTTCGTATTTGTACCTCTTACTCAGCCATACCTTCATGAATATGG 1375
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1314 TTATATATTTGCGGGCTTCGTATTTGTACCTCTCACTCAGCCATACCTTCACGAATATGG 1373
Query 1376 AGAAGATTGGTATAACACTTCTCCCCGCACATTGTGCCATCGTGCATTAAAAGATTTGCC 1435
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1374 AGAAGATTGGTATAACACTTCTCCCCGCACATTGTGCCAGCGTGCATTGAAAGATTTGCC 1433
Query 1436 CAAAAAAGCCGGTCAACAACTTGTCATTGTCTCTCAGGTGTTAATGGATGATATCAACAC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CAAAAAAGCCGGTCAACAACTTGTCATTGTCTCTCAGGTGTTAATGGATGATATCAACAC 1493
Query 1496 AGGATACGAGCGTCTCGCAGAACTACAAGTGAATAAAGTGAACGGAGTAGAAGTGAATAA 1555
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1494 AGGATACGAGCGTCTCGCAGAGCTACAAGTGAATAAAGTGAACGGAGTAGAAGTGGATAA 1553
Query 1556 TCTGAGACATCTATGTCAGCTCATAGAGAACTGCAACACCGAAAAGCTGAGGATAGACTT 1615
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1554 TCTGAGACATCTATGTCAGCTCATAGAGAACTGCAACACCGAGAAGCTGAGGATAGACTT 1613
Query 1616 AGACGATGAGAGTAGGGTAATCGTCTTGAACTACCAATCCGCAAAAATTGCCACTTCTTT 1675
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1614 AGACGATGAGAGTAGGGTAATCGTATTGAACTACCAATCCGCAAAAATTGCCACTTCTTT 1673
Query 1676 GATTTTGAAACGACACAGAATAGCATCAGCGATTTCCAGCGATCTGCTTATCGAACAAAA 1735
||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 1674 GATTTTGAAACGACACAGAATAGCATCTGCGATTTCCAGCGATCTACTGGTAGAACAAAA 1733
Query 1736 TCTAGAAACCGAGTTGGCTTCTTGTTCTGCGGTTTGAGCTATCGCCAACACGTATGGCAT 1795
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1734 TCCAGAAACCGAGTTGGCTTCTTGTTCTGCGGTTTGAGCTAACGCCAACACATATGGCAT 1793
Query 1796 GTTGTACACTTACAAATTCATTCATAATTTGTAAACTACAATGTTGTATAC-TCATAAAC 1854
||||||||||| |||||||||||||||||||||||| ||||| |||||| | ||||||||
Sbjct 1794 GTTGTACACTT-CAAATTCATTCATAATTTGTAAACCACAATCTTGTAT-CGTCATAAAC 1851
Query 1855 ATTTAGGATTTGATAAGTGGCTTGTCACGAGCCTGAATTTTGAAAATCATTTATAGAAAA 1914
||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1852 ATTTAGGATTTGATAAGCCGCTTTTCACGAGCCTGAATTTTGAAAATTATTTATAGAAAA 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5