BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36960.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891284 jgi|Araly1|891284|Al_scaffold_0007_3270 542 2e-153
Ahg947318 jgi|Araly1|947318|scaffold_703547.1 311 5e-84
> Ahg891284 jgi|Araly1|891284|Al_scaffold_0007_3270
Length=423
Score = 542 bits (293), Expect = 2e-153
Identities = 375/413 (91%), Gaps = 11/413 (3%)
Strand=Plus/Plus
Query 62 TCGTCGTCGTGGGAGATGCAACTAGTGGAAACGGCTAAAGAGGAACTCGAGATTCTTCAG 121
|||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 10 TCGTCGTCGTGGGAGATGCAACTAATGGAAACGGCTAAAGAGGAGCTGGAGATTCTTCAG 69
Query 122 TCTCAATATCCCAACCGCTTCGCTTACCTCAAATCCGATCTTCAATCTTTCATTTCTCAC 181
||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 70 TCTCAATATCCAAACCGCTTTGCGTACCTTAAATCCGATCTTCAATCTTTCATTTCTCAC 129
Query 182 CTCCGTGAAGATCACGCGCCGCCGCGT---T--T-AT-C-AC-CCTCCTCCTCCGTAGTC 232
||||||||||||||||||||||||||| | | | | | |||||||||| || ||
Sbjct 130 CTCCGTGAAGATCACGCGCCGCCGCGTCCCTCCTCCTCCTCCTCCTCCTCCTCTGTCGTT 189
Query 233 CTCACTCAAGAGTCATCAAATTGTAACTATAAGCAAAAACATAAGAAGAGAAAGTGCGTC 292
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 190 CTTACTCAAGAGTCATCAAATTGTAAGAATAAGCAAAAACATAAGAAGAGAAAAAGCGTC 249
Query 293 ATGGACAATTTAGGAGATCAAGCATCATCGTCAACAACGGGAAAGATCCATAAGAACAAT 352
||||||||||| || ||||||||||| || ||||||| ||||||||||| |||||||||
Sbjct 250 ATGGACAATTTTGGGGATCAAGCATCGTCATCAACAATTGGAAAGATCCACAAGAACAAT 309
Query 353 AACAAGATGGGTCAGAGAGTGGTCA-CGAAGaaaaaaaaTAGAGTTGAAATGGTTCTTGA 411
|||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 310 AACAAGATAGGTCAGAGAGTGGTCACCG-AGAGAAAAAATAGAGTTGAAATGGTTCTTGA 368
Query 412 GAGGGCTCAACTTTGTCTCCAAAAGATAAGAGACGTGAAAGCCTCTTTGTGTT 464
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 369 GAGGGCTCAACTTTGTCTCCAGAAGATAAGAGACGTGAAAGCCTCTTTGTGTT 421
> Ahg947318 jgi|Araly1|947318|scaffold_703547.1
Length=272
Score = 311 bits (168), Expect = 5e-84
Identities = 234/264 (89%), Gaps = 11/264 (4%)
Strand=Plus/Plus
Query 320 TCGTCAACAACGGGAAAGATCCATAAGAACAATAACAAGATGGGTCAGAGAGTGGTCACG 379
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 12 TCGTCAACAATGGGAAAGATCCACAAAAACAATAACAAGATGGGTCAGAGAGTGGTCACC 71
Query 380 AAGaaaaaaaaTAGAGTTGAAATGGTTCTTGAGAGGGCTCAACTTTGTCTCCAAAAGATA 439
|||| || |||||||| |||||||||| || ||| |||||||||||||||||| ||||||
Sbjct 72 AAGAGAATAAATAGAGCTGAAATGGTTTTTAAGATGGCTCAACTTTGTCTCCAGAAGATA 131
Query 440 AGAGACGTGAAAGCCTCTTTGTGTTGACCCttt-ttacaactctttt-tt-tctctgttt 496
|||||||||||||||| ||| |||||||| ||| |||||||| |||| || |||||||||
Sbjct 132 AGAGACGTGAAAGCCTTTTT-TGTTGACCTTTTCTTACAACT-TTTTCTTCTCTCTGTTT 189
Query 497 tttGGTTGATGAAATGTATAAGGAA--TGATAGTTACCGTCCGAGAAATGTGATTGCAAG 554
||| |||| ||||||||||| |||| | |||||||||||| ||||||| | ||||||||
Sbjct 190 TTTTGTTGCTGAAATGTATACGGAAAATAATAGTTACCGTCAGAGAAATTT-ATTGCAAG 248
Query 555 TGAT-A--AAAAGTAAAATGCTTC 575
|||| | ||||||||||||||||
Sbjct 249 TGATTATGAAAAGTAAAATGCTTC 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5