BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G36960.1 Length=725 Score E Sequences producing significant alignments: (Bits) Value Ahg891284 jgi|Araly1|891284|Al_scaffold_0007_3270 542 2e-153 Ahg947318 jgi|Araly1|947318|scaffold_703547.1 311 5e-84 > Ahg891284 jgi|Araly1|891284|Al_scaffold_0007_3270 Length=423 Score = 542 bits (293), Expect = 2e-153 Identities = 375/413 (91%), Gaps = 11/413 (3%) Strand=Plus/Plus Query 62 TCGTCGTCGTGGGAGATGCAACTAGTGGAAACGGCTAAAGAGGAACTCGAGATTCTTCAG 121 |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct 10 TCGTCGTCGTGGGAGATGCAACTAATGGAAACGGCTAAAGAGGAGCTGGAGATTCTTCAG 69 Query 122 TCTCAATATCCCAACCGCTTCGCTTACCTCAAATCCGATCTTCAATCTTTCATTTCTCAC 181 ||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 70 TCTCAATATCCAAACCGCTTTGCGTACCTTAAATCCGATCTTCAATCTTTCATTTCTCAC 129 Query 182 CTCCGTGAAGATCACGCGCCGCCGCGT---T--T-AT-C-AC-CCTCCTCCTCCGTAGTC 232 ||||||||||||||||||||||||||| | | | | | |||||||||| || || Sbjct 130 CTCCGTGAAGATCACGCGCCGCCGCGTCCCTCCTCCTCCTCCTCCTCCTCCTCTGTCGTT 189 Query 233 CTCACTCAAGAGTCATCAAATTGTAACTATAAGCAAAAACATAAGAAGAGAAAGTGCGTC 292 || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 190 CTTACTCAAGAGTCATCAAATTGTAAGAATAAGCAAAAACATAAGAAGAGAAAAAGCGTC 249 Query 293 ATGGACAATTTAGGAGATCAAGCATCATCGTCAACAACGGGAAAGATCCATAAGAACAAT 352 ||||||||||| || ||||||||||| || ||||||| ||||||||||| ||||||||| Sbjct 250 ATGGACAATTTTGGGGATCAAGCATCGTCATCAACAATTGGAAAGATCCACAAGAACAAT 309 Query 353 AACAAGATGGGTCAGAGAGTGGTCA-CGAAGaaaaaaaaTAGAGTTGAAATGGTTCTTGA 411 |||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||| Sbjct 310 AACAAGATAGGTCAGAGAGTGGTCACCG-AGAGAAAAAATAGAGTTGAAATGGTTCTTGA 368 Query 412 GAGGGCTCAACTTTGTCTCCAAAAGATAAGAGACGTGAAAGCCTCTTTGTGTT 464 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 369 GAGGGCTCAACTTTGTCTCCAGAAGATAAGAGACGTGAAAGCCTCTTTGTGTT 421 > Ahg947318 jgi|Araly1|947318|scaffold_703547.1 Length=272 Score = 311 bits (168), Expect = 5e-84 Identities = 234/264 (89%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 320 TCGTCAACAACGGGAAAGATCCATAAGAACAATAACAAGATGGGTCAGAGAGTGGTCACG 379 |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 12 TCGTCAACAATGGGAAAGATCCACAAAAACAATAACAAGATGGGTCAGAGAGTGGTCACC 71 Query 380 AAGaaaaaaaaTAGAGTTGAAATGGTTCTTGAGAGGGCTCAACTTTGTCTCCAAAAGATA 439 |||| || |||||||| |||||||||| || ||| |||||||||||||||||| |||||| Sbjct 72 AAGAGAATAAATAGAGCTGAAATGGTTTTTAAGATGGCTCAACTTTGTCTCCAGAAGATA 131 Query 440 AGAGACGTGAAAGCCTCTTTGTGTTGACCCttt-ttacaactctttt-tt-tctctgttt 496 |||||||||||||||| ||| |||||||| ||| |||||||| |||| || ||||||||| Sbjct 132 AGAGACGTGAAAGCCTTTTT-TGTTGACCTTTTCTTACAACT-TTTTCTTCTCTCTGTTT 189 Query 497 tttGGTTGATGAAATGTATAAGGAA--TGATAGTTACCGTCCGAGAAATGTGATTGCAAG 554 ||| |||| ||||||||||| |||| | |||||||||||| ||||||| | |||||||| Sbjct 190 TTTTGTTGCTGAAATGTATACGGAAAATAATAGTTACCGTCAGAGAAATTT-ATTGCAAG 248 Query 555 TGAT-A--AAAAGTAAAATGCTTC 575 |||| | |||||||||||||||| Sbjct 249 TGATTATGAAAAGTAAAATGCTTC 272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26686041900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5