BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G36970.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330253 jgi|Araly1|330253|fgenesh1_pm.C_scaffold_7002480 1192 0.0
> Ahg330253 jgi|Araly1|330253|fgenesh1_pm.C_scaffold_7002480
Length=747
Score = 1192 bits (645), Expect = 0.0
Identities = 714/748 (95%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGATCACCAGAAAATTCATCCGGTGAGCGACCCCGAAGCGCCGCCACATCCAACG 60
||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||
Sbjct 1 ATGTCCGATCATCAGAAAATCCATCCGGTAAGCGACCCGGAAGCGCCACCACATCCAACG 60
Query 61 GCTCCCCTTGTTCCACGTGGTTCCTCAAGATCGGAACATGGTGATCCTACCAAGACACAG 120
|||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 61 GCTCCCCTTGTTCCACGTGGCTCCTCGAGATCGGAACACGGTGATCCCACCAAGACACAG 120
Query 121 CAAGCAGCACCGTTGGATCCTCCGAGGGAGAAGAAAGGATCAAGAAGTTGTTGGTGCAGA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CAAGCAGCACCGTTGGATCCTCCGAGAAAGAAGAAAGGATCAAGAAGTTGTTGGTGCAGA 180
Query 181 TGCGTGTGCTACACGCTTCTTGTCCTCTTTCTCCTTATTGTCATCGTAGGAGCGATCGTT 240
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 TGCGTGTGCTACACACTTCTTGTCCTCTTTCTCCTTATTGTTATCGTTGGAGCGATCGTT 240
Query 241 GGTATACTCTACCTTGTATTTAGACCAAAATTTCCGGATTACAATATTGACCGGTTACAG 300
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GGTATACTCTACCTTGTCTTTAGACCAAAATTACCGGATTACAATATTGACCGGTTACAG 300
Query 301 CTAACCCGGTTTCAACTAAACCAAGACTTGAGTTTATCCACCGCATTTAACGTTACCATA 360
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 CTCACCCGGTTTCAACTAAACCAAGACTTGAGTTTATCTACCGCGTTTAACGTTACCATA 360
Query 361 ACCGCGAAAAATCCCAACGAGAAAATTGGAATTTACTATGAAGATGGAAGCAAG-ATTAG 419
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 361 ACCGCGAAAAATCCCAACGAGAAAATCGGAATTTACTATGAAGATGGAAGC-AGAATTAG 419
Query 420 TGTCTTGTACATGCAAACCAGAATCAGTAATGGGTCGTTGCCAAAATTCTACCAAGGACA 479
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 420 TGTCTTGTACATGCAAACCAGACTCAGTAATGGGTCATTGCCGAAATTCTACCAAGGACA 479
Query 480 TGAGAATACTACTATTATATTGGTAGAAATGACTGGTTTTACTCAAAATGCAACAAGTTT 539
||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct 480 TGAGAATACGACTATTATATCCGTAGAAATGACTGGTTTTAATCAGAATGCAACAAGTAT 539
Query 540 AATGACGACATTGCAAGAGCAACAACGGTTAACAGGAAGTATACCGTTGCGGATTAGAGT 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AATGACGACATTGCAAGAGCAACAACGGTTAACAGGAAGCATACCGTTGCGGATTAGAGT 599
Query 600 TACCCAACCGGTTCGGATCAAACTCGGGAAATTAAAGTTGATGAAAGTAAGATTTTTGGT 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TACCCAACCGGTTCGGATCAAACTCGGGAAATTAAAGTTGATGGAAGTAAGATTTTTGGT 659
Query 660 TAGGTGTGGTGTATCCGTTGATAGCTTGGCTGCTAACAGTGTGATTAGGGTTAGAAGTAG 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TAGGTGTGGTGTATCCGTTGATAGCTTAGCTGCTAACAGTGTGATTAGGGTTAGAAGTAG 719
Query 720 TAACTGCAAATACAGGTTTAGACTATAA 747
||||||||||||||||||||||||||||
Sbjct 720 TAACTGCAAATACAGGTTTAGACTATAA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5