BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37000.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947352 jgi|Araly1|947352|scaffold_703581.1 1085 0.0
Ahg488861 jgi|Araly1|488861|fgenesh2_kg.6__1995__AT5G19670.1 67.6 3e-10
> Ahg947352 jgi|Araly1|947352|scaffold_703581.1
Length=1653
Score = 1085 bits (587), Expect = 0.0
Identities = 658/693 (95%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 941 ACCATTTGAAAGAATATGTCGATCTGATAGCAGGAAAGTATAAGTTCTGGAACCGAACTG 1000
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 866 ACCATTTGAAGGAATATGTCGATTTGATAGCAGGAAAGTATAAGTTCTGGAACCGAACTG 925
Query 1001 GTGGAGCTGATCATTTTCTTGTTGCTTGTCATGATTGGGGCAACAAACTGA-CAACAAAA 1059
||||||| ||||||||| |||||||||| |||||||||||||||||||| | ||| ||||
Sbjct 926 GTGGAGCCGATCATTTTATTGTTGCTTGCCATGATTGGGGCAACAAACTAACCAA-AAAA 984
Query 1060 ACCATGAAGAACAGTGTTAGATCACTTTGTAACTCAAATGTTGCCCAAGGCTTCAGAATT 1119
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 985 ACCATGAAGAACAGTGTTCGAGCACTTTGCAACTCAAATGTTGCCCAAGGCTTCAGAATT 1044
Query 1120 GGGACCGATACTGCTTTACCGGTAACATATATACGCTCTTCCGAGGCCCCTCTTGAGTAT 1179
||||||||||| |||||||| || ||||||||||||||| ||||| |||||||||||||
Sbjct 1045 GGGACCGATACAGCTTTACCAGTCACATATATACGCTCTGCCGAGTCCCCTCTTGAGTAC 1104
Query 1180 CTCGGTGGAAAAACTTCGTCCGAAAGGAAGATTCTTGCATTCTTTGCTGGCAGCATGCAC 1239
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1105 CTCGGTGGAAAAACTCCATCCGAAAGGAAGATTCTTACATTCTTTGCTGGCAGCATGCAC 1164
Query 1240 GGATATCTCCGTCCGATACTAGTGAAGCTTTGGGAGAATAAAGAACCTGACATGAAGATT 1299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GGATATCTCCGTCCGATCCTAGTGAAGCTTTGGGAGAATAAAGAACCTGACATGAAGATT 1224
Query 1300 TTTGGTCCAATGCCTCGTGACCCTAAAAGCAAGAAACAATACCGAGAATATATGAAGAGC 1359
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1225 GTCGGTCCAATGCCTCGTGACCCCGAAAGCAAGAAACAATACCGAGAATACATGAAGAGC 1284
Query 1360 AGCAGGTACTGCATATGTGCGAGGGGTTATGAAGTCCACACTCCTAGGGTTGTCGAGGCT 1419
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1285 AGCAAGTACTGCATATGTGCGAGGGGTTATGAAGTCCACACCCCTAGGGTTGTCGAGGCT 1344
Query 1420 ATCATTAATGAATGTGTTCCGGTTATCATTGCTGACAACTACGTGCCTCCCTTTTTCGAG 1479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1345 ATCATTAATGAATGTGTTCCGGTTATCATAGCTGACAACTACGTGCCTCCCTTTTTCGAG 1404
Query 1480 GTTTTGAACTGGGAGGAATTTGCTGTGTTTGTTGAGGAGAAAGATATACCGAATCTGAGA 1539
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1405 ATTTTGAATTGGGAGGAATTTGCAGTGTTTGTTGAGGAGAAAGATATACCGAATCTGAGA 1464
Query 1540 AACATTCTGCTATCCATACCCGAAGATAGATATATTGGCATGCAAGCAAGGGTTAAAGCG 1599
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1465 AACATTCTGCTATCGATATCCGAAGAGAGATATATTGGCATGCAAGCAAGGGTTAAAGCG 1524
Query 1600 GTGCAGCAACATTTCCTGTGGCACAAGAAACCG 1632
|||||||||||||||||||||||||||||||||
Sbjct 1525 GTGCAGCAACATTTCCTGTGGCACAAGAAACCG 1557
Score = 713 bits (386), Expect = 0.0
Identities = 569/653 (87%), Gaps = 29/653 (4%)
Strand=Plus/Plus
Query 15 GAGATTTCATCATTCCGACATCAGGAGATTGTTGTTGGGAATCATTGTTATAGCTGGTTT 74
|||||||||||||||||||||| |||||||||||| |||||||||||| | || ||||||
Sbjct 45 GAGATTTCATCATTCCGACATCCGGAGATTGTTGTCGGGAATCATTGTCACAGTTGGTTT 104
Query 75 TGTTGTTCTGCTTGTTCAGTGTTTTGGTATTCCCTGTCGGAATTCTTTTTGCTTGTCTCC 134
|||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||
Sbjct 105 TGTTGTTCTGCTTGTTCAGTGTTTCGGTATTCCCTGTCCGAAAACGTTTTGCTTGTCTCC 164
Query 135 AATTAAGGTTTCAGTGATTGAGTTAACTAACTCCAATGTCACTCAAGTTTCTGTGATGAA 194
| ||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 165 AGTTACGGTTTCAGTGATTGAGTCAACCAATTCCAATGTCACTCAAGTTTCTGTGATGAA 224
Query 195 CTACACAAATCTTTCTG--A-TG---ATGATGATGAGGAACTTG-A-A----AATAAAAA 242
|||| |||||| |||| | || ||| |||||||||| ||| | | ||||||||
Sbjct 225 TTACATAAATCTCTCTGATATTGATAATGTTGATGAGGAATTTGAAGAGGGGAATAAAAA 284
Query 243 GGAGGATCTTGATAGCGAAAATGATGTGGTGATTAGTAAGGAGAAGGTAGAGATGAATGT 302
| ||||||| ||| | ||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 285 GAAGGATCTAGATGGAGAAAATGATGTTGTAATTAGCAAGGAGAAGGTAGAGATTAATGT 344
Query 303 ATCTTTTATTGCTATAGGAAATATATCTTTAAGGAATCCTAAAATGGTGGTTGTTAGCTC 362
|||| ||||||| | || ||||||||| | ||||| ||| | ||| ||||||
Sbjct 345 ATCTGTTATTGCCAGAGCAAATATATCACTGAGGAAACCT---A------TTGATAGCTC 395
Query 363 AGAGTCAGAGTCAGATCCAAATTCGGTTATGATTAGGGTTAAAGATAGTAGAAAGGGTAA 422
|| | | ||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 396 --AG--A-A-TCAGATCCAAATTTGGTTATGGTTAGGGTTAAAGATAGTAGAAATGGTAA 449
Query 423 TGTTTTATCTCTGAGGAGGCACAAGCAAGGGAG-TGCGATTTCGATATCTCAGATGAACT 481
|||||| ||| |||||| |||| ||| |||| | ||||||||||||||||||||||||||
Sbjct 450 TGTTTTGTCTATGAGGAAGCACGAGCGAGGG-GCTGCGATTTCGATATCTCAGATGAACT 508
Query 482 CATTGCTGATCCAGAGTCTTTCTTCTTTTAAATCTCCTAAGCCTCGGTGGTCATCTGCTA 541
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 509 CACTGCTGATCCAGAGTCTTTCTTCTTTTAAATCCCCTAAGCCTCGGTGGTCATCTGCTC 568
Query 542 GAGACTCTGAAATGCTCTCTGCGAGATCCGAGATTGAGAAAGTCTCTCTTGTTCATGATT 601
||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||| |
Sbjct 569 GAGACTCTGAAATGCTCTCTGCGAGATTCGAGATTGAGAAAGCCTCTGTTGTGCATGAAT 628
Query 602 TTCTTGGACTTAATCCTTTGGTTTATCGAAATATCTCCAAGTTTCTAAGGAGT 654
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 629 TTCTTGGACTTAATGCTTCGGTTTATCGAAATATCTCCAAGTTTCTAAGGAGT 681
Score = 279 bits (151), Expect = 3e-74
Identities = 179/192 (93%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 691 AGGAGTTATGACTTGATGGAGAGGAAACTC-AAGATTTATGTGTACAAGGAAGGAGGGAA 749
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 676 AGGAGTTACGACTTGATGGAGAGGAAACTCAAAG-TTTATGTGTACAAGGAAGGAGGGAA 734
Query 750 ACCAATATTCCACACGCCGA-TGCCTCGAGGAATATACGCTTCAGAAGGTTGGTTTATGA 808
|||||||||||| | ||| | ||||||||||||| ||||| |||||||||||||| ||||
Sbjct 735 ACCAATATTCCATAAGCC-ACTGCCTCGAGGAATTTACGCCTCAGAAGGTTGGTTCATGA 793
Query 809 AACTCATGGAAAGCAACAAGAAGTTTGTAGTAAAAGACCCCAGGAAGGCTCATTTGTTCT 868
|||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 794 AACTTATGGAAAGCAACAAGAAGTTTGTAGTAAGAGACCCTAGGAAGGCTCATTTGTTCT 853
Query 869 ACATACCCATCA 880
||||||||||||
Sbjct 854 ACATACCCATCA 865
> Ahg488861 jgi|Araly1|488861|fgenesh2_kg.6__1995__AT5G19670.1
Length=2173
Score = 67.6 bits (36), Expect = 3e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 995 GAACTGGTGGAGCTGATCATTTTCTTGTTGCTTGTCATGATTGGG 1039
|||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1378 GAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGATTGGG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5