BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37010.1
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493700 jgi|Araly1|493700|fgenesh2_kg.7__3133__AT5G37010.1 2804 0.0
Ahg349974 jgi|Araly1|349974|fgenesh1_pg.C_scaffold_6000567 333 3e-90
> Ahg493700 jgi|Araly1|493700|fgenesh2_kg.7__3133__AT5G37010.1
Length=1958
Score = 2804 bits (1518), Expect = 0.0
Identities = 1836/1985 (92%), Gaps = 40/1985 (2%)
Strand=Plus/Plus
Query 4 CTCAAAAACGCTCTCTTCATCTTCTTCACCAAGAGCGTCTGCTTC-AATTTCTTCAGCAA 62
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 2 CTCAAAAACGCTCTCTTCATCTTCTTCTTC-A-AGCGTCTGCTTCAAATTTCTTCAGCAA 59
Query 63 ATGGGTTGCTGTCTCAGCAAAAATCCTCCTCAAGCTTCTTCATCTTCTCTAATTGACGGA 122
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||
Sbjct 60 ATGGGTTGCTGTCTCAGCAAAAATCCTCCTCCAGCTTCTTCTTCTTCTCCGATTAACGGA 119
Query 123 TCTTGTTCCGTAAAATCACCAGATCTGAACAAATCCGCCATTGATACACCTCTGAAACTa 182
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 120 TCTTGTTCCGTTAAATCACCAGATCCGAACAAATCCGCCATTGATAAACCTCTGAAACTA 179
Query 183 gaagcacaagagaagaagattca-agtagaagaatcgaaaccaaggaatgaagaaga-aa 240
|||||||||||||||||| ||| |||||| ||||||||||||| |||||||||| | |
Sbjct 180 GAAGCACAAGAGAAGAAG-CTCACAGTAGAGGAATCGAAACCAAAGAATGAAGAA-ACAG 237
Query 241 agatacaagaagaTAATAATAGCAAGCCGAGGAAAGAAGTGTTCGTGATAAAACATCGGA 300
||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 238 AGATACAAGAAGAGAAT-AT--CAAGCCGAGAAAAGAAGTGTTCGTGATAAAACATCGGA 294
Query 301 GAAGCCATGAGAAATCATCGAAGACGACGACAGATCCGGAAGATTCTTCTGTTTCCGATG 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 295 GAAGCCATGAGAAATCATCGAAGACGACGACAGATCCGGAGGATTCTTCTGTTTCTGATG 354
Query 361 TGAAATCAACCGGTTCGAATCATAATCCGGTTGATGTAGATGCGATTTTGATCCAGTGTG 420
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 355 TGAAATCAACTGGTTCGAATCATAATCCGGTTGATGTTGATGCGATTTTGATTCAGTGTG 414
Query 421 GGAGATTGAGTCGGAGTAACTCAGCCGCTGCGAAAACTAGGAGATATTCTGGATCTAAGA 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 GGAGATTGAGTCGGAGTAACTCAGCCGCTGCGAAAACGAGGAGATATTCTGGATCTAAGA 474
Query 481 GGAGTTTCGATTTTGATCAGAACGGTGGTGACGCGGATGCGGAAGATGGCGGAGAAGACG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 475 GGAGTTTCGATTTTGATCAGAACGGTGGTGACGCGGATGCGGAAGATGGCGGAGAAGAAG 534
Query 541 AAGAAGCTGAGAGGAGGATTCATCGTCAGCGCCAACGTGGTGGAGAATCGCCTCGGGAAC 600
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 535 AAGAAGCTGAGAGGAGGATTCATCGGCAGCGTCAACGTGGTGGAGAATCGCCTCGGGAAC 594
Query 601 GGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTAATCGATCGGGAAGTA 660
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 595 GGAGAAGACGAACTCCGAGTAGAGAGAGGGATGATTCGAAGAGTTATAGATCGGGAAGTA 654
Query 661 GAGAGAGAGGAAGTAGTGGTAACGGTGGTGGAAGTCGACGAGTGAGTAGATCTCCGGGAA 720
|||||||||||||| || | |||||||| ||| |||| |||||||||||||||||||
Sbjct 655 GAGAGAGAGGAAGTGGTAATGGTGGTGGTGGTAGTAGACGGGTGAGTAGATCTCCGGGAA 714
Query 721 GAAGATCGGAGATAAACCCTAATTCCAGTGGCAATTCTGTGAATTCGAGTAACAACAATA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 GAAGATCGGAGATAAACCCTAATTCCAGTGGCAATTCTGTGAATTCGAGTAACAA---TA 771
Query 781 GACCTGGGAAATTTGTATCTGTTCCTGCAACAGATAAAGCTTTAAGCAACAACAATGGAG 840
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 772 GACCTGGGAAATTTGTATCTGTTCCTGCAACAGATAAGGCTTTAAGTAACAA---TGGAG 828
Query 841 ATGGATCTGTGAAACGGATTACTGTTAAGAGAAACGTTGGAAAAGCGGCTTCTCCGAGGT 900
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 829 ATGGATCTGTGAAACGGATTACTGTGAAGAGAAACGTTGGAAAAGCTGCGTCTCCGAGGT 888
Query 901 CTCAGTCACCGGCGAGAGCTGCGAGTCAGCCTTCTCCGTCGAAGCTTAGCCGGAAAACGG 960
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 889 CTCAGTCACCGGCGAGAGCGGCGAGTCAGCCTTCGCCGTCGAAGCTTAGCCGGAAAACGG 948
Query 961 AGCATTCTCCGTATAGGAGGAATCCACTGAGTGAGATTGATCCAAACTCTGTAGCGTTTC 1020
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 949 AGCATTCTCCGTATAGGAGGAATCCATTGGGTGAGATTGATCCAAACTCTGTAGCGTTTC 1008
Query 1021 CACTCTCTCAAGGTGATA--AATTGGGTTCTGGTAACAACATAAGGATGATGAATAGAGA 1078
||||||||||||||| | || | || |||||| | | |||||||||| |||||
Sbjct 1009 CACTCTCTCAAGGTGCTGGTAACACCAAT-TG-TAACAA-A-A-GGATGATGAACAGAGA 1063
Query 1079 CAATGAAAATCAAGGATTGGTTAAAGAATCTGGAACTTTCGTAGCTCAGAAGTTGAATCC 1138
|| ||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 1064 CACTGACAATCAAGGATTGATTAAAGAATCTGGAAATTTCGTTGCTCAGAAGTTGAATCC 1123
Query 1139 TGTGATGA--A-TAC-AAAGACGGTTACACAAGCGCCAATCCGAAGAACCGCGAGCCCGA 1194
|||||||| | ||| ||| || | ||| ||||||||||||||||||||||| || ||||
Sbjct 1124 TGTGATGATGAATACGAAA-ACTGCTACTCAAGCGCCAATCCGAAGAACCGCAAGTCCGA 1182
Query 1195 GTCGTGCCATCAAGGAGCAGCAAGAGGCAGTGGAAGAGTGTAAGATAGTGGTT-TCATCT 1253
||||||| ||||| ||||||||||||| ||| |||||||||||||||||| || ||||||
Sbjct 1183 GTCGTGCAATCAAAGAGCAGCAAGAGGGAGTTGAAGAGTGTAAGATAGTG-TTATCATCT 1241
Query 1254 GGAACTGAGTTGGCTAAGCCACAAATTGTGAGCAGGAGCAGATCTTTGAGGAAATCTCGT 1313
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GTAACTGAAATGGCTAAGCCTCAAATTGTGAGCAGGAGCAGATCTTTGAGGAAATCTCGT 1301
Query 1314 GATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGATATCAACAATGTTAAC 1373
|||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1302 GATTTCGACTTCAGTCCCGAAGCATTGCTCTCAAACAACATCGACATTAACAATGTTAAC 1361
Query 1374 AGTAACAATGCAACTGCAGGATCAACGTTTCCGTCTTATACAGCTTTGCTTTTAGAAGAT 1433
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1362 AGTAACAATGCAACTGCAGGGTCAACGTTTCCTTCTTACACAGCTTTGCTTTTAGAAGAC 1421
Query 1434 ATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAGTGCGTTAAGTTCATCTATGTCCAAG 1493
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||
Sbjct 1422 ATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAATGCCTTAAGTTCAACTATGTCCAAG 1481
Query 1494 GCTTGTTCCATTGTCGAAGCAGTTGCAGATCTTAACTCTGCTACGAATCAACATCAAAGA 1553
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1482 GCTTGTTCTATTGTTGAAGCAGTTGCAGATCTTAACTCCACTACGAATCAACATCAAAGA 1541
Query 1554 ACCGAGGTCAGTTTCACATCCGCTGCAGCGAAGAAAGCGGATTTAATGGAGCCGAG-TTT 1612
|| |||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 1542 ACAGAGGTCAGTTTCACATCCGCAGCAGCGAAGAAAGCGGATCTAATGGAGCC-AGGTTT 1600
Query 1613 CGAGAAGTATGTGACTGTTAAGAGAGGTGGTTCTTCGTTGGATGACATGGAAGAGCAAGA 1672
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 1601 CGAGAAGTATGTGACTGTTAAGAGAGGTGGTTCATCATTGGAGGATATGGAAGAGCAAGA 1660
Query 1673 ATCTTCAGGAAGCAACAGTTTTACGGGAAGTAGTTGCGTGGTGCAGCGACAGGGATACTC 1732
||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 1661 ATCTTCAGGAAGCAACAGTTTCACGGGAAGCAGTTGTGTGGTGCAGCGACAAGGATACTC 1720
Query 1733 ATCGTCGTCTTCATGGGAACCGAATTCAGCTGAATCGACGGATCGAGTGAGTATGAGATC 1792
|||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1721 ATCGTCTTCTTCATGGGAACCGAATTCAGCTGAATCGACAGATCGCGTGAGTGCGAGATC 1780
Query 1793 ATCAAACAAACAAGAACGTGATCGGAGTCCACTTGGTGTGAAT-TATGAGAAACAAGAGT 1851
| || ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1781 A--AA-CAAACAAGAACGTGACCGGAGTCCACTTGGTGTGAATGT-TGAGAAACAAGAGT 1836
Query 1852 TTGATCCGTTGAAGAAGAATGGTGTTGGAGTTGGACGCAAAAGAGTAGCTGTTGTTGATT 1911
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1837 TTGATCCGTTGAAGAAGAATGGCGTTGGCGTTGGACGCAAAAGAGTAGCTGTTGTTGATT 1896
Query 1912 CGTCGTCTTCAGGCAAAGGTGTTCTTCAGGCAACAACGACTCGTGTTGCTGCAGTATCAA 1971
|||| ||||||||||| ||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 1897 CGTCTTCTTCAGGCAA-GGT-T-CTTCAGGCAACAACAACTCGTGTTGCTGCAGTTTCAA 1953
Query 1972 TGTAA 1976
|||||
Sbjct 1954 TGTAA 1958
> Ahg349974 jgi|Araly1|349974|fgenesh1_pg.C_scaffold_6000567
Length=705
Score = 333 bits (180), Expect = 3e-90
Identities = 229/252 (91%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 1126 AGAAGTTGAATCCTGTGATGAATAC-AAAGACGGTTACACAAGCGCCAATCCGAAGAACC 1184
||||| ||||||||||||||||||| ||| | | ||| |||||||||||||||||||||
Sbjct 185 AGAAGGTGAATCCTGTGATGAATACGAAA-CCTGCTACTCAAGCGCCAATCCGAAGAACC 243
Query 1185 GCGAGCCCGAGTCGTGCCATCAAGGAGCAGCAAGAGGCAGTGGAAGAGTGTAAGATAGTG 1244
|| || ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| |
Sbjct 244 GCAAGTCCGAGTCGTGCCATCAAAGAGCAGCAAGAGGGAGTTGAAGGGTGTAAGATAG-G 302
Query 1245 GTT-TCATCTGG-AACTGAGTTGGCTAAGCCACAAATTGTGAGCAGGAGCAGATCTTTGA 1302
||| ||||| || |||||| |||| | |||| ||||||||||||| ||||||||||||||
Sbjct 303 GTTATCATC-GGTAACTGAATTGGTTGAGCCTCAAATTGTGAGCATGAGCAGATCTTTGA 361
Query 1303 GGAAATCTCGTGATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGATATCA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 GGAAATCTCGTGATTTCGATTTCAGTCCCGAAGCATTGCTCTCAAACAATATCGACATCA 421
Query 1363 ACAATGTTAACA 1374
||||||||||||
Sbjct 422 ACAATGTTAACA 433
Score = 315 bits (170), Expect = 1e-84
Identities = 212/232 (91%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 1409 TTATACAGCTTTGCTTTTAGAAGATATTCAGAATTTCCACCAGAAGAGTGTTAATGTCAG 1468
||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 428 TTA-ACA-CTTTGCTTTTAGAAGACATTCAGAATTTCCATCAGAAGAGTGTTAATGTTAG 485
Query 1469 TGCGTTAAGTTCATCTATGTCCAAGGCTTGTTCCATTGTCGAAGCAGTTGCAGATCTTAA 1528
||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 486 TGCCTTAAGTTCATCTATGTCCAAAGCTTGTTCTATTGTTGAAGCAGTTGCAGATCTTAA 545
Query 1529 CTCTGCTACGAATCAACATCAAAGAACCGAGGTCAGTTTCACATCCGCTGCAGCGAAGAA 1588
||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 546 CTCCACTACAAATCAACATCAAAGAACCGAGGTCAGTTTCACATCCGCAGCAGCGAAGAA 605
Query 1589 AGCGGATTTAATGGAGCCGAG-TTTCGAGAAGTATGTGACTGTTAAGAGAGG 1639
|| ||| |||||||||| || ||| ||||||||||| ||||||||||||||
Sbjct 606 AGTTGATCTAATGGAGCCAAGCTTT-GAGAAGTATGTTACTGTTAAGAGAGG 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78884897395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5