BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37055.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493697 jgi|Araly1|493697|fgenesh2_kg.7__3130__AT5G37055.1 970 0.0
> Ahg493697 jgi|Araly1|493697|fgenesh2_kg.7__3130__AT5G37055.1
Length=640
Score = 970 bits (525), Expect = 0.0
Identities = 597/631 (95%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 2 AAATCCGTCGCTGCGCTTCCAACGTTCGCCGGCAATCTAAACATTTTCCGGGATGGAGGA 61
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1 AAATCCGCCGCTGCGCTTCCAACG-TCGCCGGCTATCTAAACATTTTCCGGGATGGAGGA 59
Query 62 AGAGATGTCGAACCGTCGAGTATCAAATCGGACTCGTAAGGTCGCTACGAAGATGGCGGC 121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 AGAGATGTCGAACCGTCGAGTATCAAATCGGACTCGCAAGGTCGCTACGAAGATGGCGGC 119
Query 122 GGCTCTTACAAGCAACGACAATCGAACTCAGGCTGCTATAGCTAGGCTAGAGGCTTTAGA 181
||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||
Sbjct 120 GGCTCTTACAAGCAATGATAATCGAACACAGGCTGCTATAGCTAGGCTGGAGGCTTTAGA 179
Query 182 GAACGATAATGGTGCTATTGAAGTGATAGATTTGAACGATGATGAAGAAGCTTCTCTTGA 241
||| |||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 180 GAATGATAATGGTGCTGTTGAAGTGGTAGATATGAACGATGATGACGAAGCTTCTCTTGA 239
Query 242 TGAAGATGATGATCTCGGTTACTTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAAC 301
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAGACGATGATCTTGGTTACGTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAAC 299
Query 302 TCGACAAGCGAAAGCTTTAGAAGCTCGTAAAGCTCCTAAATCCTTCCTTGAGCTATTGCA 361
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 300 TCGACAAGCGAAAGCTTTAGAAGCTCGTAGAGCTCCTAAATCATTCCTTGAGCTGTTGCA 359
Query 362 AGAGGCAAATTTGGAGTCTTTACC-GTCGCATGTACCGACTTACTTGAAAGCAGCAGTTG 420
||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 360 AGAGGCAAATTTGGAATCTTTACCTG-CGCATGTACCGACTTACTTGAAAGCAGCTGTTG 418
Query 421 GACCTCCGAGTTCGTCTTCTCGTCGCTATTTTTGCTCGGTTTGTGGTTACATTGCAGGTT 480
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 419 GACCTCCGAGTTCGTCTTCTCGTCGCCATTTCTGCTCGGTTTGTGGTTACATTGCAGGCT 478
Query 481 ACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAATATTCACAAGG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 ACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAACATTCACAAGG 538
Query 541 ATACTCGTTGTCAGAAATTTGTTGCATAGGAAAGGAGTGTGAAAACAAATGTAACATATT 600
||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||
Sbjct 539 ATACTCGTTGTCAGAAATTTGTTGCGTAGGAAAG-AGTG--AAAACATATGTAACATATT 595
Query 601 TTTCAAAATGTATTTGAAACATCA-TCAATC 630
|||| ||||||||||||||||||| ||||||
Sbjct 596 TTTCTAAATGTATTTGAAACATCAATCAATC 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5