BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37060.1
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330263 jgi|Araly1|330263|fgenesh1_pm.C_scaffold_7002490 3541 0.0
Ahg495963 jgi|Araly1|495963|fgenesh2_kg.8__1779__AT5G58460.1 2484 0.0
> Ahg330263 jgi|Araly1|330263|fgenesh1_pm.C_scaffold_7002490
Length=2586
Score = 3541 bits (1917), Expect = 0.0
Identities = 2379/2601 (91%), Gaps = 36/2601 (1%)
Strand=Plus/Plus
Query 1 ATGGTTAGGCACTTCCCCATCAAT---GACCAGAGTCTCCTGCCTGCCCATTTTGGGTTC 57
||||||||||| |||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 1 ATGGTTAGGCATTTCCCCATCAATGACGACCAGAGTGTCCTGCCTACCCATTTTGGGTTT 60
Query 58 TGGCCGGGTAACTCAACCACACCC-GGAGAGGTCAGC-AATCGTGTTTTCTCTCCCAAAA 115
||||||||||| |||||||| ||| |||||||||| | | |||||| ||||||||||||
Sbjct 61 TGGCCGGGTAATTCAACCAC-CCCGGGAGAGGTCA-CTAGTCGTGTCTTCTCTCCCAAAC 118
Query 116 TTCCGGTGGTTTGCCGGAAACTTCATAGTAAGCAGCCGTTTGGAATGTTCAAAGGCGAAA 175
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 119 TTCCGGTGGTATGCCGGCAACTTCATAGTAAGCAACCGTTTGGAATGTTCAAAGGCGAAA 178
Query 176 ATGCTATGAACTACGCATTTTCGACCTTTTTGATCGAAGCAATCATCATCATTTTCTTCA 235
|||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 179 ATGCGATGAACTATGCATTTTCGACTTTTTTAATCGAAGCAATCATCATCATTTTCTGCA 238
Query 236 TCAAAGTT-GTTAGCATT-GCCCTTCGACCTTTTCGCCAACCTCGTATAGTCAGTGAGAT 293
||||| || ||||| || | |||||||||| |||||||||||||||||||||| |||||
Sbjct 239 TCAAA-TTCGTTAG-TTTCGTCCTTCGACCTCTTCGCCAACCTCGTATAGTCAGCGAGAT 296
Query 294 CATTGGTGGAATGATGATAGGACCATCGATGTTTGGAGGAATCAGAAATTTCAATTACTA 353
||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||
Sbjct 297 CATTGGTGGAATGATGATAGGACCATCAATGCTTGGAGGAAGCCGAAATTTCAATTACTA 356
Query 354 TTTATTCCCACCAATTGCGAATTACATATGCGCAAACATAGGACTGATGGGGtttttttA 413
| | |||||||| || ||||| ||||||||||||||||||||||| ||||| || || ||
Sbjct 357 TCTGTTCCCACCGATCGCGAACTACATATGCGCAAACATAGGACTAATGGGATTCTTCTA 416
Query 414 CTTCCTCTTCCTCACGGCGGCCAAGACGGACGTTGGAGCCATTGGGAAG-GCACCAAGAA 472
|||||||||||||||||| || |||||||| |||| | |||||||| || ||||||||||
Sbjct 417 CTTCCTCTTCCTCACGGCCGCGAAGACGGATGTTGCATCCATTGGG-AGAGCACCAAGAA 475
Query 473 AGCACAAGTACATTGCTGCCATAGGAGTTATCGTGCCGATAATCTGCGTTGGAAG-CGTG 531
|||||||||||||||||||||| || ||||||||||| || ||||||| ||| || ||||
Sbjct 476 AGCACAAGTACATTGCTGCCATTGGTGTTATCGTGCCAATTATCTGCG-TGGGAGCCGTG 534
Query 532 GGGATGGCCATGCGAGACCAAATGGATGAAAACTTGCAGAAGCCTTCGTCCATT-GGAGG 590
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 535 GGGATGGCCATGCGAGATAAAATGGATGAAAACTTGAAGAAGCCTTCGTCCATTGGGGGG 594
Query 591 AGTCGTGTTCGCCTTGTCTTTCACTTCTTTCCCGGTCATTTACACCGTTTTGAGAGACAT 650
| || ||||||||||| ||||||| |||||||| |||||||| | ||||||||||||||
Sbjct 595 A-TCATGTTCGCCTTGGCTTTCACCTCTTTCCCTGTCATTTATTCTGTTTTGAGAGACAT 653
Query 651 GAACCTTCTCAACTCCGAGGTGGGCAAGTTCGCCATGTCGGTGGCTCTCCTTGGAGACAT 710
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAACCTTCTTAACTCCGAGGTGGGCAAGTTCGCCATGTCGGTGGCTCTCCTTGGAGACAT 713
Query 711 GGCAGGGGTCTACGTGATTGTTATTTTTGAAGCCATGACGCATGCTGACGTAGGAGGAGC 770
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 714 GGCAGGGGTCTACGTGATTGTTATTTTTGAAGCCATGACGCAGGCTGACGGAGGAGGAGC 773
Query 771 TTATTCTGTCTTCTGGTTTCTAGTATCGGTGGTCATCTTCGCAGCTTTTATGCTTCTGGT 830
||| || |||| |||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 774 ATATGCTCTCTTTTGGTTTCTAGTATCGGTGGTAATCTTCGCGGCTTTTATGCTTTTGGT 833
Query 831 TGTTAGACGAGCCTTTGATTGGATAGTCT-CCCAAACGCCTGAAGGAACACTTGTGAACC 889
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 834 TGTTAGACGAGCCTTTGATTGGATTGT-TGCCCAAACGCCTGAAGGAACACTTGTGAACC 892
Query 890 AAAACTACATCGTCATGATTCTCATGGGTGTTCTTGCCTCTTGTTTCCTCACAGACATGT 949
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 893 AAAACTACATTGTCATGATTCTCATGGGTGTCCTTGCCTCTTGTTTCCTCACCGACATGT 952
Query 950 TCGGTCTTTCTATAGCCGTGGGACCCATTTGGCTAGGGTTACTAGTCCCTCATGGCCCAC 1009
||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||
Sbjct 953 TCGGTCTTTCTATAGCCGTAGGACCCATTTGGTTAGGGTTGCTGGTCCCTCATGGCCCAC 1012
Query 1010 CGTTGGGTTCGACGTTGGCTGTCCGAAGCGAGACCTTCATCTATGAATTTTTGATGCCTT 1069
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1013 CGTTGGGTTCGACGTTGGCTGTTCGGAGCGAGACCTTCATCTATGAATTTTTGATGCCTT 1072
Query 1070 TCACATATGCTCTAGTGGGACAAGGCACCAATATCCACTTCCTTAGAGATGAGACATGGC 1129
|| | |||||| | |||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 1073 TCTCTTATGCTTTGGTGGGACAAGGCACCAATATTCACTACTTTAGAGATGAGACATGGC 1132
Query 1130 GCAATCAGCTATCTCCTCTCTTCTACATGACCGTCGTCGGCTTCATCACCAAGTTTCTCT 1189
| ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1133 GTGATCAGCTCTCTCCTCTCTTCTACATGACCCTCGTCGGCTTCTTCACTAAGTTTCTCT 1192
Query 1190 CTACCGCTTTCGCTGCTCTATTCTTCAAAGTCCCCGCTAGGGAAAGTATTACACTTGGTT 1249
|||||||| | ||||||| ||||||||||||||||||||||| ||| | || ||||| |
Sbjct 1193 CTACCGCTGCCACTGCTCTCTTCTTCAAAGTCCCCGCTAGGGACAGTCTCACGCTTGGGT 1252
Query 1250 TGATGATGAACTTAAGAGGTCAGATGGATTTGTTGGTATACTTGCATTGGATCGATAAAC 1309
||||||||||||| ||||| ||||||||| | ||||| ||||||||||||||||||||||
Sbjct 1253 TGATGATGAACTTGAGAGGCCAGATGGATATCTTGGTCTACTTGCATTGGATCGATAAAC 1312
Query 1310 GTATTGTGGGCTTTCCCGGTTACACTGTCATGGTTTTGCATACGGTTGTGGTCACAGCTG 1369
|||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||| || |
Sbjct 1313 GTATTGTGGGCTTTCCAGGTTTCACTGTCATGGTTTTGCATTCGGTTGTAGTCACGGCCG 1372
Query 1370 TAACGACCCCACTCATCAACTTTTTCTACGATCCCACTCGACCTTACCGAAGCAGCAAGC 1429
|| |||| || ||||||| |||| |||||||||||||||| || |||||||||||||| |
Sbjct 1373 TATCGACGCCGCTCATCAGCTTTCTCTACGATCCCACTCGGCCATACCGAAGCAGCAAAC 1432
Query 1430 ACCGCACCATCCAACACACTCCTCAGAACACCGAGATGGGACTGGTTCTTGCAGTTTCCG 1489
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1433 ACCGCACCATCCAACACACTCCTCAAAACACCGAGATGGGACTGGTTCTTGCAGTCTCCA 1492
Query 1490 ACCACGAAACCTTGTCGGGTTTGATAACTTTTCTCGATTTCGCCTATCCCACTAAAAGTA 1549
||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1493 ACCACGAAACCTTATCCGGCTTGATAACTTTCCTCGACTTCGCCTATCCCACTAAAAGTA 1552
Query 1550 GTCCCTTATCTATATTCGCAGTCCAGCTAGTGGAACTAGCAGGAAGAGCCACGCCGTTGT 1609
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1553 GTCCCTTGTCTATATTCGCAGTCCAGCTTGTGGAACTAGCAGGGAGAGCCACGCCGTTGT 1612
Query 1610 TTATTGACCACGAACAACgaaaggaggaggaagaagaagaatacgaggaggaagaggaag 1669
|||||||||| || || |||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 1613 TTATTGACCATGAGCAGCGAAGGGAGGAGGATGAAGAAGAATACGAGGAGGAAGAAGAAG 1672
Query 1670 agCCTGAACGTA-A--GCAAAGTGGACGGATAGATCAGGTGCAAAGCGCCTTTAAGTTGT 1726
| ||||| |||| | ||||||||| || ||||| || || || ||||||||||||||||
Sbjct 1673 ACCCTGACCGTACAACGCAAAGTGGGCGAATAGACCAAGTCCAGAGCGCCTTTAAGTTGT 1732
Query 1727 ACGAAGAGAAAAGAAATGAGTGCGTGA-CG-TTGCGTTCATACACAGCTCATGCTCCAAA 1784
|| ||||||||||| ||||||| || | || || ||| | ||||| ||||||||||||||
Sbjct 1733 ACCAAGAGAAAAGAGATGAGTGTGT-ATCGCTT-CGTGCCTACACCGCTCATGCTCCAAA 1790
Query 1785 ACGTCTCATGTACCAAGACATTTGCGAGCTTGCCTTAGGC-AAGAAAA-CCGCTTTCATT 1842
|||||||||||||||||||||||||||||| ||||| ||| || |||| |||||||||||
Sbjct 1791 ACGTCTCATGTACCAAGACATTTGCGAGCTGGCCTT-GGCTAA-AAAAGCCGCTTTCATT 1848
Query 1843 CTCTTACCTTATCAGAAAGAGCGTCTTGAAGACGCTGCCCCTACCGAGCTACGTGATTCC 1902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1849 CTCTTACCTTATCAGAAAGAGCGTCTTGAAGACGCTGCCCCTACCGAGCTACGTGACTCC 1908
Query 1903 GGCATGCTATCTGTGAACGCAGACGTCTTGGAACACACACCTTGCTCTGTCTGTATATAT 1962
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1909 GGCATGCTATCTGTGAACGCAGACGTATTGGAACACACACCTTGCTCTGTATGTATCTAC 1968
Query 1963 TTTGACAAGGGACGGCTTAAGAACGCGGTGGTTAGGTTATCCATGGACCTACAACACTCA 2022
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1969 TTTGACAAAGGACGGCTTAAGAACGCGGTGGTTCGGTTATCCATGGACCTACAACACTCA 2028
Query 2023 ACAAACTCAATCCGTATGAGGCAAGAAACGTACCGTTTCGTGGTTTTGTTTTTAGGAGGA 2082
|||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 2029 ACAAACTCAAGCCGTATGAAACAAGAAACATACCGTTTCGTGGTTTTGTTTCTAGGAGGA 2088
Query 2083 GCTGATAACAGAGAAGCTCTACATCTAGCCGATAGAATGTCAACAAACCCGGACGTAACG 2142
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2089 GCTGATAACAGAGAAGCTCTACATTTAGCCGATAGAATGTCGACAAACCCGGACGTAACC 2148
Query 2143 TTGACTGTGATCCGATTCTTATCGTACAACCACGAAGGAGAAGACGAGAGAGAGAAGAAG 2202
||||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||||
Sbjct 2149 TTGACGGTGATCCGATTCTTGGCGTTCAACCACGAAGGAGAGGATGAGAGAGAGAAGAAG 2208
Query 2203 CTAGACGATGGTGTAGTCACATGGTTTTGGGTCAAAAACGAAAGCAACGAGAGGGTTAGT 2262
||||||||||| |||||||| |||||||||||||| |||||| | ||||| |||||||||
Sbjct 2209 CTAGACGATGGGGTAGTCACGTGGTTTTGGGTCAAGAACGAAGGAAACGATAGGGTTAGT 2268
Query 2263 TACAAAGAAGTTGTAGTCAAGAACGGTGCTGAGACACTCGCTGCAATCCAAGCAATGAAT 2322
|||||||| |||||||| || ||||||||||||||| | ||||| |||||||||||||||
Sbjct 2269 TACAAAGAGGTTGTAGTTAAAAACGGTGCTGAGACATTGGCTGCGATCCAAGCAATGAAT 2328
Query 2323 GTCAACGACTACGATCTCTGGATAACCGGAAGAAGAGAAGGGATCAACCCAAAGATTCTT 2382
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 GTCAACGACTACGATCTATGGATAACCGGAAGAAGAGAAGGGATCAACCCAAAGATTCTT 2388
Query 2383 GAAGGTTTATCCACGTGGAGCGAAGACCACCAGCTCGGAGTCATTGGAGACACCGTGGCT 2442
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2389 GAAGGTTTATCCACGTGGAGCGAAGACCACCAGCTTGGAGTCATCGGAGACACCGTGGCT 2448
Query 2443 GCGA-GCGTCTTT-GCCTCAGAAGGG-TCGGTGTTGGTGGTGCAGCAACAAGTGAGGAAC 2499
| || |||| ||| ||||| || ||| |||||||||||||||||||||||||| ||||||
Sbjct 2449 G-GAAGCGT-TTTCGCCTCCGA-GGGATCGGTGTTGGTGGTGCAGCAACAAGTAAGGAAC 2505
Query 2500 CAAAAAGGTGGTGATGGTTTCTTGAATGGCAAGTTTGATTACAAGAGGTTCTTATCTCCT 2559
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2506 CAAAAAGGTGGTGATGGTTTCTTGAATGGCAAGTTTGATTACAAGAGTTTCTTATCTCCT 2565
Query 2560 TGGTCTCACTCTCATAATTGA 2580
|||||||||||||||||||||
Sbjct 2566 TGGTCTCACTCTCATAATTGA 2586
> Ahg495963 jgi|Araly1|495963|fgenesh2_kg.8__1779__AT5G58460.1
Length=2583
Score = 2484 bits (1345), Expect = 0.0
Identities = 2210/2622 (84%), Gaps = 81/2622 (3%)
Strand=Plus/Plus
Query 1 ATGGTTAGGCACTTCCCCA-TCAATGACCAGAGT-CTCCTGCCTGCCCATTTTGGGTTCT 58
||||||||| | ||||| | | ||||| |||| | ||||||| ||| ||| |||||||
Sbjct 1 ATGGTTAGGTATTTCCCAAGT-GATGACTGGAGTGC-CCTGCCTACCCGTTTCGGGTTCT 58
Query 59 GGCCGGGTAACT-CAACCA-CACCCGGAGAGGTCAGCAATCGTGTTTTCTCTCCCAAAAT 116
||||||| || | |||||| || |||||| |||||||| |||||||||||| | | | |
Sbjct 59 GGCCGGGGAA-TCCAACCACCA-CCGGAGTGGTCAGCAGCCGTGTTTTCTCTGCTAGACT 116
Query 117 TCCGGTGGTTTGCCGGA-A-ACTTCATAG-TAAGCAGCCGTTTGGAATGTTCAAAGGCGA 173
|||||||||||| | || | | |||| | |||||||||||| |||||||||||||||||
Sbjct 117 TCCGGTGGTTTGTC-GACAGA-TTCA-CGATAAGCAGCCGTTCGGAATGTTCAAAGGCGA 173
Query 174 AAAT-GCTATGAACTACGCATTTTCGACCTTTTTGATCGAAGCAATCA-TCATCATTTTC 231
|||| || ||||||||| ||||||| || ||||||||||||||||| | ||||||||||
Sbjct 174 AAATGGC-ATGAACTACACATTTTCAACATTTTTGATCGAAGCAAT-ACTCATCATTTTG 231
Query 232 TTCATCAAAGTTG-TTAGCATTGC-CCTTCGACCTTTTCGCCAACCTCGTATAGTCAGTG 289
||||||||| ||| ||| | || | |||||||||| |||| ||||||||||||||| | |
Sbjct 232 TTCATCAAAATTGTTTA-C-TTCCTCCTTCGACCTCTTCGTCAACCTCGTATAGTCTGCG 289
Query 290 AGATCATTGGTGGAATGATGATAGGACCATCGATGTTTGGAGGAATCAGAAATTTCAATT 349
||||||||||||| |||||||||||||| || ||| ||||| ||| | |||| |||||||
Sbjct 290 AGATCATTGGTGGGATGATGATAGGACCGTCCATGCTTGGAAGAAGCCGAAACTTCAATT 349
Query 350 ACTATTTATTCCCACCAATTGCGAATTACATATGCGCAAACATAGGACTGATGGGGtttt 409
||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || |
Sbjct 350 ACTATCTGTTTCCTCCAATTGCGAATTACATATGCGCGAACATAGGACTGTTGGGATTCT 409
Query 410 tttACTTCCTCTTCCTCACGGCGGCCAAGACGGACGTTGGAGCCAT-TGGGAAGGCACCA 468
|||| ||| ||||||||||||| |||||||||||||||| || || | || ||||||
Sbjct 410 TTTATTTCTTCTTCCTCACGGCTGCCAAGACGGACGTTGCAGAAATCT-TTAAAGCACCA 468
Query 469 AGAAAGCACAAGTACATTGCTGCCA-TAGGAGTTATCGTGCCGA-TAATCTGCGTTGGAA 526
|||||||| |||||||||||||||| || | ||| | ||||||| | | ||||| ||
Sbjct 469 AGAAAGCATAAGTACATTGCTGCCATTA-GCGTTTTGGTGCCGATTGCT-TGCGTGGGGG 526
Query 527 G--CGTGGGGATGGCCATGCGAGACCAAATGGATG-AAAACTTGCAGAAGCCTTCGTCCA 583
| || |||| | ||| || ||| ||||||||| || | |||||||| |||| ||||
Sbjct 527 GCACG-GGGGCT-GCCTTGAAAGAAAAAATGGATGTAAGA-TTGCAGAAATCTTCTTCCA 583
Query 584 TTGGAGGAGTCGTGTTCGCCTTGTCTTTCACTTCTTTCCCGGTCATTTACACCGTTTTGA 643
||||||| ||| |||||||||| |||||||||||| || ||||||||||| |||||||
Sbjct 584 TTGGAGGGGTCACGTTCGCCTTGGGTTTCACTTCTTTTCCAGTCATTTACACTGTTTTGA 643
Query 644 GAGACATGAACCTTCTCAACTCCGAGGTGGGCAAGTTCGCCATGTCGGTGGCTCTCCTTG 703
|||||||||||||||||||||||||| | || |||||||||||||| ||| ||||||| |
Sbjct 644 GAGACATGAACCTTCTCAACTCCGAGATAGGAAAGTTCGCCATGTCAGTGACTCTCCTCG 703
Query 704 GAGACATGGCAGGGGTCTACGTGATTGTTATT-TTTGAAGCCATGACGCATGCTGAC-GT 761
||||||||| |||| |||||||| ||||| || |||||||||||| |||| |||||| ||
Sbjct 704 GAGACATGGTAGGGATCTACGTGCTTGTT-TTGTTTGAAGCCATGGCGCAGGCTGACGGT 762
Query 762 --AGGAGGAGCTTATTCTGTCTTCTGGTTTCT-AGTATCGGT-GGTC-ATCTTCGCAGCT 816
||||||||| || |||||| | |||||||| | | || | || | ||||| || |||
Sbjct 763 GGAGGAGGAGCATACTCTGTCATATGGTTTCTCA-TCTC-ATCGG-CTATCTTGGCCGCT 819
Query 817 TTTATGCTTCTGGTTGTTAGACG-AGCCTTTGATTGGATAGTCTCCCAAACGCCTGAAGG 875
||| ||||| ||||||| | ||| || |||||| |||| ||| || |||||||||| ||
Sbjct 820 TTTTTGCTTTTGGTTGTGAAACGAAG-CTTTGAGAGGATTGTCGCCAAAACGCCTGAGGG 878
Query 876 AACACTTGTGAACCAAAACTACATCGTCATGATTCTCATGGGTGTTCTTGCCTCTTGTTT 935
| ||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 879 AGGACTCGTGAACCAAAACTACATTGTCATGATTCTCATGGGTGTCCTTGTCTCTTGTTT 938
Query 936 CCTCACAGACATGTTCGGTCTTTCTATAGCCGTGGGACCCATTTGGCTAGGGTTACTAGT 995
|||||| |||||||| ||| | |||||||||| |||||||||||||||||||| | ||
Sbjct 939 CCTCACCGACATGTTTGGTATGGCTATAGCCGTTGGACCCATTTGGCTAGGGTTGGTGGT 998
Query 996 CCCTCATGGCCCACCGTTGGGTTCGACGTTGGCTGTCCGAAGCGAGACCTTCATCT-ATG 1054
|||||||||||||||||||||||| ||||||||| | || |||||||||||| | | |||
Sbjct 999 CCCTCATGGCCCACCGTTGGGTTCCACGTTGGCTATTCGGAGCGAGACCTTCGT-TAATG 1057
Query 1055 AATTTTTGATGCCTTTCACATATGCTCTAGTGGGACAAGGCACCAATATCCACTTCCTTA 1114
|||| |||||||||||| | | |||| ||||||||||| |||||| || |||| ||||
Sbjct 1058 AATTCTTGATGCCTTTCTCTTTTGCTTTAGTGGGACAAAAAACCAATGTCAACTTACTTA 1117
Query 1115 G-AGATGAGACATGGCGC-AATCAGCTATCTCCTCTCT-TCTACATGACCGTCGTCGGCT 1171
| | ||||||| |||| | || ||| | |||||||| | ||||||||| | |||| ||||
Sbjct 1118 GCA-ATGAGACTTGGC-CTAAACAGGTCTCTCCTCT-TGTCTACATGAGCATCGTTGGCT 1174
Query 1172 TCATCACCAAGTTTCTCT-CTACCGCTTTCGCTGCTCTATTCTTCAAAGTCCCCGCTAGG 1230
|| ||||||||||| ||| || || || ||||||||| ||||| ||||||||| |||||
Sbjct 1175 TCGTCACCAAGTTTGTCTCCT-CCACTGGCGCTGCTCTCTTCTTTAAAGTCCCCACTAGG 1233
Query 1231 GAAAGTATTACACTTGGTTTGATGATGAACTTAAGAGGTCAGATGGATTTGTTGGTATAC 1290
|| ||| | || ||||| |||||||||||| | ||||| ||||| ||| | ||| | |||
Sbjct 1234 GACAGTCTCACGCTTGGCTTGATGATGAACCTGAGAGGCCAGATCGATATCTTGCTCTAC 1293
Query 1291 TTGCATTGGATCGATAAACGTATTGTGGGCTTTCCCGGTTACACTGTCATGGTTTTGCAT 1350
|||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||| ||
Sbjct 1294 TTGCATTGGATCGACAAACGTATGGTAGGCTTACCCGGTTATACTGTCATGGTTTTGTAT 1353
Query 1351 ACGGTTGTGGTCACAGCTGTAACGA-CCCCACTCATCAACTTT-TTCTACGATCCCACTC 1408
| || ||||||| | |||||| | | || |||||| | ||| |||||||||||||||
Sbjct 1354 GCCATTCTGGTCACGGGTGTAAC-AGCGCCGCTCATC-AGTTTCCTCTACGATCCCACTC 1411
Query 1409 GACCTTACCGAAGCAGCAAGCACCGCACCATCCAACACACTCCTCAGAACACCGAGATGG 1468
| |||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 1412 GGCCTTACAGAAGCAGCAAGCGCCGCACAATCCAGCACACTCCTCAGAACACCGAGATGG 1471
Query 1469 GACTGGTTCTTGCAGTTTCCGACCACGAAACCTTGTCGGGTTTGATAACTTTTCTCGATT 1528
|||| ||||||||||| |||||||| || ||||| || || ||||| || |||||||| |
Sbjct 1472 GACTAGTTCTTGCAGTCTCCGACCATGATACCTTCTCTGGCTTGATCACCTTTCTCGACT 1531
Query 1529 TCGCCTATCCCACTAAAAGTAGTCCCTTATCTATATTCGCAGTCCAGCTAGTGGAACTAG 1588
|||||||||||||||||| |||||| || |||||||||||| ||||||| |||||||| |
Sbjct 1532 TCGCCTATCCCACTAAAACTAGTCCTTTTTCTATATTCGCAATCCAGCTTGTGGAACTGG 1591
Query 1589 CAGGAAGAG-CCACGCCGTTGTTTATTGACCACGAACAA-Cgaaaggaggaggaagaaga 1646
||| | | ||| |||||||||||||| |||| |||| ||||| || |||| || ||
Sbjct 1592 AAGGGCGTGCCCA-ACCGTTGTTTATTGAACACG-ACAAGCGAAA-GA--AGGAGGATGA 1646
Query 1647 agaatacgaggaggaagaggaagagCCTGAACGTAAGC-AAAGTGGACG-GA-TAGATCA 1703
||||||||||||||||||||||||||| || |||| || | | | | | || |||| ||
Sbjct 1647 AGAATACGAGGAGGAAGAGGAAGAGCCGGAGCGTATGCGGAGGAGCAGGCGAGTAGACCA 1706
Query 1704 GGTGCAAAGCGCCTTTAAGTTGTACGAAGAGAAAAGAAATGAGTGCGTGACGTTGCGTTC 1763
|||||| ||||||||||| ||||| |||||||||||| |||||| |||| | ||| | |
Sbjct 1707 GGTGCAGAGCGCCTTTAAACTGTACCAAGAGAAAAGAAGTGAGTGTGTGAAGATGCATGC 1766
Query 1764 ATACACAGCTC-ATGCTCCAAAACGTCTCATGTACCAAGACATTTGCGAGCTTGCCTTAG 1822
||||| || | ||||| |||| | || |||||| ||||| ||||| | | | ||||| |
Sbjct 1767 CTACACCGC-CAATGCTTCAAAGCATCACATGTATCAAGATATTTGTGGGGTGGCCTT-G 1824
Query 1823 -GCAAGAAAACCGCTTTCATTCTCTTACCTTATCAGAAAGAGCGTCTTGAAGACGCTGCC 1881
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1825 ACCAAGAAAACCGCTTTCATTCTCTTACCTTATCAGAAAGAGCGTCTTCAAGACGCAGCT 1884
Query 1882 CCTACCGAGCTACGTGATTCCGGCATGCTATCTGTGAACGCAGACGTCTTGGAACACACA 1941
| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1885 CTTACCGAGCTACGTGACTCCGGCATGCTATCTGTGAACGCAGACGTCTTGGCACACACA 1944
Query 1942 CCTTGCTCTGTCTGTATATATTTTGACAAGGGACGGCTTAAGAACGCGGTGGTTAGGTTA 2001
||||||||||||||||| |||| ||| |||||||| ||||| ||||| ||||| ||| |
Sbjct 1945 CCTTGCTCTGTCTGTATCTATTATGAGAAGGGACGACTTAAAAACGCCATGGTTCGGTCA 2004
Query 2002 TCCATGGACCTACAACACTCAACAAACTCAATCCGTATGAGGCAAGAAACGTACCGTTTC 2061
|||||||||| |||||| ||||||| |||| || |||||||||||||| ||||||||||
Sbjct 2005 TCCATGGACCCGCAACACACAACAAATTCAAGCCATATGAGGCAAGAAATGTACCGTTTC 2064
Query 2062 GTGGTTTTGTTTTTAGGAGGAGCTGATAACAGAGAAGCTCTACATCTAGCCGATAGAATG 2121
|||||| |||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 2065 GTGGTTCTGTTTTTAGGAGGAGCTGATAACAGAGAAGCTCTGCATCTGGCTGATAGGATG 2124
Query 2122 TCA-ACAAACCCGGACGTAACGTTGACTGTGATCCGATTCTTATCGTACAACCACGAAGG 2180
| | || |||| | |||| ||||| || || | ||||| || |||||||||||||
Sbjct 2125 ACGGAGAA-CCCGTATATAACCTTGACAGTTATTAGGTTCTTGGCGCACAACCACGAAGG 2183
Query 2181 AGAAGACGAGAGAGAGAAGAAGCTAGACGATGGTGTAGTCACATGGTTTTGGGTCAAAAA 2240
||| || ||||| |||||||||||||||||||| || || || ||||| |||||||| ||
Sbjct 2184 AGAGGATGAGAGGGAGAAGAAGCTAGACGATGGGGTGGTGACGTGGTTCTGGGTCAAGAA 2243
Query 2241 CGAAAGCAACGAGAGGGTTAGTTACAAAGAAGTTGTAGTCAAGAACGGTGCTGAGACACT 2300
|||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 2244 CGAAAGCAACGAAAGGGTTAGTTACAAGGAGGTTGTTGTCAAGAACGGTGCTGAGACATT 2303
Query 2301 CGCTGCAATCCAAGCAATGAATGTCAACGACTACGATCTCTGGATAACCGGAAGAAGAGA 2360
||||| || |||||||||||||| || ||||||||||| ||||||||||| || |||||
Sbjct 2304 GGCTGCGATTCAAGCAATGAATGTTAATGACTACGATCTGTGGATAACCGGGAGGAGAGA 2363
Query 2361 AGGGATCAACCCAAAGATTCTTGAAGGT-TTATCCACGTGGAGCGAAGACCACCAGCTCG 2419
|||||||||||||||||||| ||||| || || ||||||||||| ||||||||||| |
Sbjct 2364 AGGGATCAACCCAAAGATTCAGGAAGGACTT-TCTACGTGGAGCGAGGACCACCAGCTTG 2422
Query 2420 GAGTCATTGGAGACACCGTGGCTGCGAGCGTCTTT-GCCTCAGAAGGGTCGGTGTTGGTG 2478
||||||| |||||||| ||||||| |||||| ||| ||||| || || ||||||||||||
Sbjct 2423 GAGTCATCGGAGACACAGTGGCTGGGAGCGT-TTTCGCCTCGGATGGTTCGGTGTTGGTG 2481
Query 2479 GTGCAGCAACAAGTGAGGAACCAAAAAGGTGGTGATGGTTTCTTGAATGGCAAGTTTGAT 2538
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 2482 GTGCAGCAACAAGTGAGGAACCAGAAGGGTGGTGATGGTTTCTTGAACGGCAAGTTTGAT 2541
Query 2539 TACAAGAGGTTCTTATCTCCTTGGTCTCACTCTCATAATTGA 2580
||||||| || | |||||||||||||||||||||||||||
Sbjct 2542 TACAAGAAATTAGTGTCTCCTTGGTCTCACTCTCATAATTGA 2583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97282485730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5