BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37070.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474796 jgi|Araly1|474796|fgenesh2_kg.1__4750__AT5G37070.1 774 0.0
> Ahg474796 jgi|Araly1|474796|fgenesh2_kg.1__4750__AT5G37070.1
Length=600
Score = 774 bits (419), Expect = 0.0
Identities = 499/538 (93%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 57 CTTTTACACAGAAGAGGAGAGATATGGATCAGATACTGAACAAAGTTGGCTCTTACTGGT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CTTTTACACAGAAGAGGAGAGATATGGATCAGATACTGAACAAAGTTGGCTCTTACTGGT 82
Query 117 TAGGGCAAAAGGCAAACAAAGAGTTCAATTCCGTCGGTGACGATTTCAATTCATTGTCTA 176
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 83 TAGGTCAAAAGGCAAACAAAGAGTTCAATTCCGTCGGTGACGATTTCAATTCATTGTCAA 142
Query 177 GCAGTATTGAAGGAGGTACCAAGTGGTTAGTCAACAAACTCAAAGGAAAAATGCAGAAGC 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 143 GCAGTATTGAAGGAGGTACCAAGTGGTTAGTCAACAAACTCAAAGGAAAAATGCAGAAAC 202
Query 237 CATTACCTGAATTGTTGAAGGAATTTGGTCTACCAGTTGGGATCTTCCCACAGGATGCTA 296
|||||||||| ||| |||||||||||||| |||||||||||||||| ||||| ||||| |
Sbjct 203 CATTACCTGATTTGCTGAAGGAATTTGGTTTACCAGTTGGGATCTTTCCACAAGATGCCA 262
Query 297 CAAACTATGAATTCAACGAAGAGACGGGTAAATTGACTGTATTCATCCCTGAGACATGTG 356
|||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || |
Sbjct 263 CAAACTATGAGTTCAACGAAGATACGGGTAAGTTGACTGTATTTATCCCTGAGACCTGCG 322
Query 357 AAGTTGGGTACAGAGATTCATCGGTTCTGCGGTTTTCAACTACGGTAACGGGTTA-CTTG 415
| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||| || |
Sbjct 323 AGGTTGGGTACAGGGATTCATCTGTCCTGCGGTTTTCGACTACGGTAACGGGTTATCTAG 382
Query 416 GAGAAAGGGAAGCTAGCAGAAGTGGAAGGCATGAAGACAAAGGTTATGATATGGGTGAAA 475
|||||||||||||||||||||| |||||| |||| |||||||| ||||| |||||||||
Sbjct 383 -AGAAAGGGAAGCTAGCAGAAGTAGAAGGCTTGAAAACAAAGGTGATGATTTGGGTGAAA 441
Query 476 GTGACTTGTATCTCAGCTGATTCATCAAAGGTATATTTCACAGCCGGGATTAAGAAAAGC 535
||||| ||||||||||| || |||||||||||||||||||||| ||||| |||||||||
Sbjct 442 GTGACATGTATCTCAGCAGACACATCAAAGGTATATTTCACAGCTGGGATAAAGAAAAGC 501
Query 536 AG-AAGCAGAGATGCTTATGAGGTAATACGACCTGGTGTTGGTGTTGATAAATTCTAA 592
|| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 502 AGGAA-CAGAGATGCTTATGAGGTAATAAGGCCTGGTGTTAGTGTTGATAAATTCTAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5